Strain Fitness in Rahnella sp. WP5 around EX31_RS10170

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10165 and EX31_RS10170 are separated by 105 nucleotidesEX31_RS10170 and EX31_RS10175 overlap by 4 nucleotidesEX31_RS10175 and EX31_RS10180 are separated by 16 nucleotides EX31_RS10165: EX31_RS10165 - aromatic acid/H+ symport family MFS transporter, at 245,174 to 246,553 _RS10165 EX31_RS10170: EX31_RS10170 - gallate dioxygenase, at 246,659 to 247,921 _RS10170 EX31_RS10175: EX31_RS10175 - amidohydrolase family protein, at 247,918 to 248,751 _RS10175 EX31_RS10180: EX31_RS10180 - type II 3-dehydroquinate dehydratase, at 248,768 to 249,208 _RS10180 Position (kb) 246 247 248Strain fitness (log2 ratio) -3 -2 -1 0 1at 245.754 kb on + strand, within EX31_RS10165at 245.786 kb on + strand, within EX31_RS10165at 245.786 kb on + strand, within EX31_RS10165at 245.786 kb on + strand, within EX31_RS10165at 245.786 kb on + strand, within EX31_RS10165at 245.786 kb on + strand, within EX31_RS10165at 245.787 kb on - strand, within EX31_RS10165at 245.787 kb on - strand, within EX31_RS10165at 245.787 kb on - strand, within EX31_RS10165at 245.787 kb on - strand, within EX31_RS10165at 245.787 kb on - strand, within EX31_RS10165at 245.787 kb on - strand, within EX31_RS10165at 245.910 kb on + strand, within EX31_RS10165at 245.966 kb on + strand, within EX31_RS10165at 245.966 kb on + strand, within EX31_RS10165at 245.966 kb on + strand, within EX31_RS10165at 245.966 kb on + strand, within EX31_RS10165at 245.966 kb on + strand, within EX31_RS10165at 245.966 kb on + strand, within EX31_RS10165at 245.967 kb on - strand, within EX31_RS10165at 245.967 kb on - strand, within EX31_RS10165at 245.967 kb on - strand, within EX31_RS10165at 245.990 kb on + strand, within EX31_RS10165at 245.990 kb on + strand, within EX31_RS10165at 246.019 kb on + strand, within EX31_RS10165at 246.155 kb on + strand, within EX31_RS10165at 246.155 kb on + strand, within EX31_RS10165at 246.156 kb on - strand, within EX31_RS10165at 246.156 kb on - strand, within EX31_RS10165at 246.156 kb on - strand, within EX31_RS10165at 246.156 kb on - strand, within EX31_RS10165at 246.191 kb on - strand, within EX31_RS10165at 246.191 kb on - strand, within EX31_RS10165at 246.359 kb on - strand, within EX31_RS10165at 246.422 kb on - strandat 246.574 kb on + strandat 246.574 kb on + strandat 246.586 kb on + strandat 246.586 kb on + strandat 246.586 kb on + strandat 246.586 kb on + strandat 246.587 kb on - strandat 246.587 kb on - strandat 246.587 kb on - strandat 246.598 kb on + strandat 246.598 kb on + strandat 246.602 kb on + strandat 246.630 kb on + strandat 246.630 kb on + strandat 246.630 kb on + strandat 246.656 kb on - strandat 246.673 kb on - strandat 246.682 kb on - strandat 246.724 kb on + strandat 246.861 kb on - strand, within EX31_RS10170at 246.872 kb on - strand, within EX31_RS10170at 246.876 kb on + strand, within EX31_RS10170at 246.876 kb on + strand, within EX31_RS10170at 246.893 kb on + strand, within EX31_RS10170at 247.000 kb on + strand, within EX31_RS10170at 247.018 kb on + strand, within EX31_RS10170at 247.018 kb on + strand, within EX31_RS10170at 247.114 kb on - strand, within EX31_RS10170at 247.116 kb on + strand, within EX31_RS10170at 247.117 kb on - strand, within EX31_RS10170at 247.201 kb on - strand, within EX31_RS10170at 247.297 kb on + strand, within EX31_RS10170at 247.442 kb on + strand, within EX31_RS10170at 247.445 kb on + strand, within EX31_RS10170at 247.445 kb on + strand, within EX31_RS10170at 247.445 kb on + strand, within EX31_RS10170at 247.446 kb on - strand, within EX31_RS10170at 247.446 kb on - strand, within EX31_RS10170at 247.446 kb on - strand, within EX31_RS10170at 247.509 kb on - strand, within EX31_RS10170at 247.672 kb on + strand, within EX31_RS10170at 247.687 kb on + strand, within EX31_RS10170at 247.687 kb on + strand, within EX31_RS10170at 247.688 kb on - strand, within EX31_RS10170at 247.821 kb on + strandat 247.821 kb on + strandat 247.821 kb on + strandat 247.822 kb on - strandat 247.822 kb on - strandat 247.825 kb on + strandat 247.825 kb on + strandat 247.825 kb on + strandat 247.825 kb on + strandat 247.825 kb on + strandat 247.825 kb on + strandat 247.825 kb on + strandat 247.825 kb on + strandat 247.826 kb on - strandat 247.826 kb on - strandat 247.826 kb on - strandat 247.826 kb on - strandat 247.829 kb on + strandat 247.830 kb on - strandat 247.830 kb on - strandat 248.002 kb on + strand, within EX31_RS10175at 248.041 kb on + strand, within EX31_RS10175at 248.063 kb on - strand, within EX31_RS10175at 248.063 kb on - strand, within EX31_RS10175at 248.105 kb on - strand, within EX31_RS10175at 248.106 kb on + strand, within EX31_RS10175at 248.106 kb on + strand, within EX31_RS10175at 248.106 kb on + strand, within EX31_RS10175at 248.106 kb on + strand, within EX31_RS10175at 248.106 kb on + strand, within EX31_RS10175at 248.107 kb on - strand, within EX31_RS10175at 248.107 kb on - strand, within EX31_RS10175at 248.107 kb on - strand, within EX31_RS10175at 248.554 kb on + strand, within EX31_RS10175at 248.775 kb on - strandat 248.775 kb on - strandat 248.838 kb on - strand, within EX31_RS10180

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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245,754 + EX31_RS10165 0.42 +0.3
245,786 + EX31_RS10165 0.44 +0.8
245,786 + EX31_RS10165 0.44 +0.6
245,786 + EX31_RS10165 0.44 +0.0
245,786 + EX31_RS10165 0.44 -0.2
245,786 + EX31_RS10165 0.44 -0.5
245,787 - EX31_RS10165 0.44 -0.7
245,787 - EX31_RS10165 0.44 -1.1
245,787 - EX31_RS10165 0.44 +1.3
245,787 - EX31_RS10165 0.44 -2.6
245,787 - EX31_RS10165 0.44 -0.6
245,787 - EX31_RS10165 0.44 -0.2
245,910 + EX31_RS10165 0.53 +1.1
245,966 + EX31_RS10165 0.57 -0.7
245,966 + EX31_RS10165 0.57 -0.6
245,966 + EX31_RS10165 0.57 +1.5
245,966 + EX31_RS10165 0.57 -0.5
245,966 + EX31_RS10165 0.57 +0.8
245,966 + EX31_RS10165 0.57 +1.0
245,967 - EX31_RS10165 0.57 -0.4
245,967 - EX31_RS10165 0.57 +0.3
245,967 - EX31_RS10165 0.57 -0.5
245,990 + EX31_RS10165 0.59 +0.1
245,990 + EX31_RS10165 0.59 +0.1
246,019 + EX31_RS10165 0.61 -0.5
246,155 + EX31_RS10165 0.71 +0.4
246,155 + EX31_RS10165 0.71 +0.7
246,156 - EX31_RS10165 0.71 -0.2
246,156 - EX31_RS10165 0.71 +0.1
246,156 - EX31_RS10165 0.71 -0.0
246,156 - EX31_RS10165 0.71 -1.0
246,191 - EX31_RS10165 0.74 -1.5
246,191 - EX31_RS10165 0.74 +0.1
246,359 - EX31_RS10165 0.86 -0.2
246,422 - -0.2
246,574 + -1.8
246,574 + +0.6
246,586 + -1.0
246,586 + -1.2
246,586 + -0.7
246,586 + +0.3
246,587 - -0.7
246,587 - +0.3
246,587 - -0.5
246,598 + +0.1
246,598 + +0.9
246,602 + +0.0
246,630 + -0.5
246,630 + +1.1
246,630 + +0.3
246,656 - +0.7
246,673 - -0.5
246,682 - -2.2
246,724 + +0.6
246,861 - EX31_RS10170 0.16 -1.0
246,872 - EX31_RS10170 0.17 -2.3
246,876 + EX31_RS10170 0.17 +0.3
246,876 + EX31_RS10170 0.17 -0.7
246,893 + EX31_RS10170 0.19 +1.4
247,000 + EX31_RS10170 0.27 -0.2
247,018 + EX31_RS10170 0.28 -0.1
247,018 + EX31_RS10170 0.28 -0.3
247,114 - EX31_RS10170 0.36 -1.1
247,116 + EX31_RS10170 0.36 -0.5
247,117 - EX31_RS10170 0.36 -2.1
247,201 - EX31_RS10170 0.43 -1.2
247,297 + EX31_RS10170 0.51 -0.2
247,442 + EX31_RS10170 0.62 -0.2
247,445 + EX31_RS10170 0.62 +0.4
247,445 + EX31_RS10170 0.62 -0.9
247,445 + EX31_RS10170 0.62 -3.2
247,446 - EX31_RS10170 0.62 -0.3
247,446 - EX31_RS10170 0.62 +0.7
247,446 - EX31_RS10170 0.62 +0.5
247,509 - EX31_RS10170 0.67 -0.4
247,672 + EX31_RS10170 0.80 +0.1
247,687 + EX31_RS10170 0.81 -0.1
247,687 + EX31_RS10170 0.81 -0.7
247,688 - EX31_RS10170 0.81 -1.2
247,821 + -1.6
247,821 + +0.4
247,821 + -0.5
247,822 - -2.2
247,822 - +0.7
247,825 + +0.8
247,825 + +0.6
247,825 + -0.6
247,825 + +0.3
247,825 + -0.4
247,825 + -2.1
247,825 + -1.6
247,825 + -0.9
247,826 - -0.4
247,826 - +1.4
247,826 - +0.3
247,826 - +0.2
247,829 + +0.0
247,830 - -0.8
247,830 - -1.1
248,002 + EX31_RS10175 0.10 -0.2
248,041 + EX31_RS10175 0.15 -0.6
248,063 - EX31_RS10175 0.17 -0.2
248,063 - EX31_RS10175 0.17 +0.4
248,105 - EX31_RS10175 0.22 +0.7
248,106 + EX31_RS10175 0.23 +0.5
248,106 + EX31_RS10175 0.23 -0.6
248,106 + EX31_RS10175 0.23 +0.2
248,106 + EX31_RS10175 0.23 +0.7
248,106 + EX31_RS10175 0.23 -0.0
248,107 - EX31_RS10175 0.23 -0.2
248,107 - EX31_RS10175 0.23 +0.8
248,107 - EX31_RS10175 0.23 -0.7
248,554 + EX31_RS10175 0.76 -1.4
248,775 - +0.8
248,775 - +0.5
248,838 - EX31_RS10180 0.16 -0.3

Or see this region's nucleotide sequence