Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS25990 and EX31_RS10070 are separated by 594 nucleotides EX31_RS10070 and EX31_RS10075 are separated by 535 nucleotides
EX31_RS25990: EX31_RS25990 - hypothetical protein, at 221,207 to 221,410
_RS25990
EX31_RS10070: EX31_RS10070 - YchE family NAAT transporter, at 222,005 to 222,649
_RS10070
EX31_RS10075: EX31_RS10075 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase, at 223,185 to 225,854
_RS10075
Position (kb) 222
223 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 221.113 kb on - strand at 221.120 kb on + strand at 221.120 kb on + strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.127 kb on - strand at 221.145 kb on - strand at 221.147 kb on + strand at 221.148 kb on - strand at 221.156 kb on - strand at 221.191 kb on - strand at 221.191 kb on - strand at 221.209 kb on - strand at 221.269 kb on + strand, within EX31_RS25990 at 221.270 kb on - strand, within EX31_RS25990 at 221.270 kb on - strand, within EX31_RS25990 at 221.270 kb on - strand, within EX31_RS25990 at 221.349 kb on + strand, within EX31_RS25990 at 221.367 kb on - strand, within EX31_RS25990 at 221.392 kb on + strand at 221.393 kb on - strand at 221.670 kb on - strand at 221.697 kb on + strand at 221.710 kb on - strand at 221.719 kb on - strand at 221.719 kb on - strand at 221.747 kb on + strand at 221.883 kb on - strand at 221.903 kb on - strand at 221.911 kb on - strand at 221.919 kb on + strand at 221.919 kb on + strand at 221.919 kb on + strand at 221.921 kb on + strand at 221.921 kb on + strand at 221.921 kb on + strand at 221.921 kb on + strand at 221.922 kb on - strand at 221.940 kb on - strand at 221.953 kb on - strand at 221.987 kb on - strand at 222.025 kb on + strand at 222.032 kb on - strand at 222.047 kb on - strand at 222.047 kb on - strand at 222.085 kb on + strand, within EX31_RS10070 at 222.086 kb on - strand, within EX31_RS10070 at 222.092 kb on - strand, within EX31_RS10070 at 222.101 kb on - strand, within EX31_RS10070 at 222.178 kb on + strand, within EX31_RS10070 at 222.233 kb on + strand, within EX31_RS10070 at 222.234 kb on - strand, within EX31_RS10070 at 222.234 kb on - strand, within EX31_RS10070 at 222.234 kb on - strand, within EX31_RS10070 at 222.234 kb on - strand, within EX31_RS10070 at 222.276 kb on - strand, within EX31_RS10070 at 222.430 kb on + strand, within EX31_RS10070 at 222.430 kb on + strand, within EX31_RS10070 at 222.430 kb on + strand, within EX31_RS10070 at 222.431 kb on - strand, within EX31_RS10070 at 222.431 kb on - strand, within EX31_RS10070 at 222.479 kb on + strand, within EX31_RS10070 at 222.480 kb on - strand, within EX31_RS10070 at 222.480 kb on - strand, within EX31_RS10070 at 222.480 kb on - strand, within EX31_RS10070 at 222.480 kb on - strand, within EX31_RS10070 at 222.480 kb on - strand, within EX31_RS10070 at 222.481 kb on + strand, within EX31_RS10070 at 222.482 kb on - strand, within EX31_RS10070 at 222.482 kb on - strand, within EX31_RS10070 at 222.482 kb on - strand, within EX31_RS10070 at 222.508 kb on + strand, within EX31_RS10070 at 222.518 kb on - strand, within EX31_RS10070 at 222.518 kb on - strand, within EX31_RS10070 at 222.540 kb on + strand, within EX31_RS10070 at 222.540 kb on + strand, within EX31_RS10070 at 222.541 kb on - strand, within EX31_RS10070 at 222.616 kb on + strand at 222.617 kb on - strand at 222.617 kb on - strand at 222.618 kb on + strand at 222.618 kb on + strand at 222.619 kb on - strand at 222.619 kb on - strand at 222.619 kb on - strand at 222.636 kb on - strand at 222.663 kb on + strand at 222.663 kb on + strand at 222.663 kb on + strand at 222.664 kb on - strand at 222.664 kb on - strand at 222.664 kb on - strand at 222.667 kb on + strand at 222.668 kb on - strand at 222.668 kb on - strand at 222.668 kb on - strand at 222.668 kb on - strand at 222.675 kb on + strand at 222.675 kb on + strand at 222.676 kb on - strand at 222.676 kb on - strand at 222.703 kb on + strand at 222.777 kb on - strand at 222.777 kb on - strand at 222.811 kb on - strand at 222.817 kb on - strand at 222.895 kb on + strand at 222.899 kb on + strand at 222.928 kb on - strand at 222.934 kb on - strand at 222.934 kb on - strand at 222.938 kb on - strand at 222.938 kb on - strand at 222.947 kb on - strand at 222.947 kb on - strand at 222.950 kb on + strand at 222.951 kb on - strand at 222.951 kb on - strand at 222.964 kb on + strand at 222.965 kb on - strand at 222.975 kb on + strand at 223.002 kb on - strand at 223.005 kb on + strand at 223.127 kb on + strand at 223.127 kb on + strand at 223.127 kb on + strand at 223.127 kb on + strand at 223.127 kb on + strand at 223.127 kb on + strand at 223.127 kb on + strand at 223.128 kb on - strand at 223.129 kb on + strand at 223.129 kb on + strand at 223.129 kb on + strand at 223.129 kb on + strand at 223.129 kb on + strand at 223.129 kb on + strand at 223.132 kb on + strand at 223.147 kb on + strand at 223.147 kb on + strand at 223.170 kb on + strand at 223.192 kb on + strand at 223.211 kb on - strand at 223.251 kb on + strand at 223.413 kb on + strand at 223.413 kb on + strand at 223.414 kb on - strand at 223.414 kb on - strand at 223.422 kb on + strand at 223.423 kb on - strand at 223.423 kb on - strand at 223.610 kb on + strand, within EX31_RS10075
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 221,113 - -1.1 221,120 + -1.3 221,120 + -0.9 221,121 - +0.9 221,121 - -0.7 221,121 - -0.0 221,121 - +0.6 221,121 - +0.8 221,121 - -0.3 221,121 - +0.8 221,121 - +0.7 221,121 - +0.1 221,121 - -0.2 221,121 - -0.5 221,121 - +0.2 221,121 - -0.5 221,121 - +0.0 221,121 - -0.5 221,121 - +0.4 221,121 - -0.3 221,127 - +0.4 221,145 - +0.5 221,147 + +0.7 221,148 - -0.6 221,156 - +0.4 221,191 - +0.4 221,191 - +0.7 221,209 - +1.0 221,269 + EX31_RS25990 0.30 -0.1 221,270 - EX31_RS25990 0.31 -2.6 221,270 - EX31_RS25990 0.31 -0.9 221,270 - EX31_RS25990 0.31 -0.4 221,349 + EX31_RS25990 0.70 +0.7 221,367 - EX31_RS25990 0.78 -0.4 221,392 + -1.1 221,393 - +0.4 221,670 - -0.3 221,697 + -0.1 221,710 - -0.7 221,719 - +0.8 221,719 - +0.7 221,747 + -0.3 221,883 - +0.4 221,903 - +0.2 221,911 - -0.1 221,919 + -1.0 221,919 + -0.2 221,919 + -0.4 221,921 + +0.6 221,921 + +0.5 221,921 + +1.2 221,921 + +0.8 221,922 - +0.5 221,940 - +0.7 221,953 - +1.3 221,987 - +1.3 222,025 + +0.0 222,032 - +1.1 222,047 - +0.4 222,047 - +0.5 222,085 + EX31_RS10070 0.12 -1.0 222,086 - EX31_RS10070 0.13 +0.2 222,092 - EX31_RS10070 0.13 +0.1 222,101 - EX31_RS10070 0.15 -0.0 222,178 + EX31_RS10070 0.27 +0.1 222,233 + EX31_RS10070 0.35 -0.3 222,234 - EX31_RS10070 0.36 +0.1 222,234 - EX31_RS10070 0.36 +0.7 222,234 - EX31_RS10070 0.36 +0.1 222,234 - EX31_RS10070 0.36 -0.1 222,276 - EX31_RS10070 0.42 +0.3 222,430 + EX31_RS10070 0.66 -0.6 222,430 + EX31_RS10070 0.66 -0.1 222,430 + EX31_RS10070 0.66 +0.1 222,431 - EX31_RS10070 0.66 -0.5 222,431 - EX31_RS10070 0.66 +0.7 222,479 + EX31_RS10070 0.73 +1.3 222,480 - EX31_RS10070 0.74 +0.6 222,480 - EX31_RS10070 0.74 -1.0 222,480 - EX31_RS10070 0.74 +0.2 222,480 - EX31_RS10070 0.74 -1.1 222,480 - EX31_RS10070 0.74 -0.3 222,481 + EX31_RS10070 0.74 -2.1 222,482 - EX31_RS10070 0.74 +0.2 222,482 - EX31_RS10070 0.74 -0.2 222,482 - EX31_RS10070 0.74 +0.3 222,508 + EX31_RS10070 0.78 -0.6 222,518 - EX31_RS10070 0.80 +0.2 222,518 - EX31_RS10070 0.80 -0.1 222,540 + EX31_RS10070 0.83 +0.6 222,540 + EX31_RS10070 0.83 +0.7 222,541 - EX31_RS10070 0.83 +0.8 222,616 + -1.1 222,617 - +0.8 222,617 - -0.5 222,618 + -0.7 222,618 + -0.3 222,619 - +0.9 222,619 - -0.2 222,619 - -0.1 222,636 - +0.9 222,663 + +1.6 222,663 + +1.2 222,663 + +0.1 222,664 - +0.2 222,664 - -0.4 222,664 - -0.1 222,667 + -2.2 222,668 - +1.9 222,668 - +0.4 222,668 - -0.3 222,668 - -0.2 222,675 + -1.9 222,675 + +0.0 222,676 - +0.7 222,676 - -1.2 222,703 + +0.5 222,777 - -0.4 222,777 - +0.0 222,811 - -0.2 222,817 - +0.3 222,895 + +1.2 222,899 + -0.6 222,928 - +0.3 222,934 - -0.5 222,934 - -0.7 222,938 - -1.1 222,938 - -0.7 222,947 - -3.7 222,947 - +0.1 222,950 + +0.4 222,951 - -1.7 222,951 - -0.7 222,964 + +0.8 222,965 - -1.2 222,975 + -1.0 223,002 - -1.4 223,005 + +0.2 223,127 + +0.5 223,127 + +0.3 223,127 + -0.0 223,127 + -0.1 223,127 + +0.4 223,127 + -1.0 223,127 + -0.2 223,128 - -1.3 223,129 + +0.3 223,129 + +0.7 223,129 + +0.5 223,129 + +0.6 223,129 + +0.6 223,129 + +0.6 223,132 + -1.2 223,147 + +0.2 223,147 + +0.1 223,170 + -1.2 223,192 + +0.7 223,211 - -1.7 223,251 + -1.3 223,413 + -1.2 223,413 + -1.5 223,414 - -0.9 223,414 - -2.0 223,422 + -0.1 223,423 - -1.1 223,423 - -3.0 223,610 + EX31_RS10075 0.16 -2.0
Or see this region's nucleotide sequence