Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09790 and EX31_RS09795 overlap by 1 nucleotides EX31_RS09795 and EX31_RS09800 overlap by 7 nucleotides
EX31_RS09790: EX31_RS09790 - autoinducer 2 ABC transporter permease LsrD, at 163,460 to 164,485
_RS09790
EX31_RS09795: EX31_RS09795 - autoinducer 2 ABC transporter permease LsrC, at 164,485 to 165,561
_RS09795
EX31_RS09800: EX31_RS09800 - autoinducer 2 ABC transporter ATP-binding protein LsrA, at 165,555 to 167,117
_RS09800
Position (kb) 164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 163.701 kb on + strand, within EX31_RS09790 at 163.701 kb on + strand, within EX31_RS09790 at 163.785 kb on + strand, within EX31_RS09790 at 164.109 kb on + strand, within EX31_RS09790 at 164.110 kb on - strand, within EX31_RS09790 at 164.209 kb on + strand, within EX31_RS09790 at 164.246 kb on + strand, within EX31_RS09790 at 164.381 kb on - strand, within EX31_RS09790 at 164.381 kb on - strand, within EX31_RS09790 at 164.420 kb on + strand at 164.421 kb on - strand at 164.466 kb on + strand at 164.466 kb on + strand at 164.466 kb on + strand at 164.492 kb on - strand at 164.492 kb on - strand at 164.512 kb on - strand at 164.603 kb on + strand, within EX31_RS09795 at 164.603 kb on + strand, within EX31_RS09795 at 164.604 kb on - strand, within EX31_RS09795 at 164.604 kb on - strand, within EX31_RS09795 at 164.604 kb on - strand, within EX31_RS09795 at 164.604 kb on - strand, within EX31_RS09795 at 164.604 kb on - strand, within EX31_RS09795 at 164.657 kb on - strand, within EX31_RS09795 at 164.716 kb on + strand, within EX31_RS09795 at 164.728 kb on + strand, within EX31_RS09795 at 164.728 kb on + strand, within EX31_RS09795 at 164.729 kb on - strand, within EX31_RS09795 at 164.940 kb on + strand, within EX31_RS09795 at 164.941 kb on - strand, within EX31_RS09795 at 164.941 kb on - strand, within EX31_RS09795 at 165.002 kb on + strand, within EX31_RS09795 at 165.003 kb on - strand, within EX31_RS09795 at 165.181 kb on + strand, within EX31_RS09795 at 165.182 kb on - strand, within EX31_RS09795 at 165.182 kb on - strand, within EX31_RS09795 at 165.220 kb on - strand, within EX31_RS09795 at 165.263 kb on - strand, within EX31_RS09795 at 165.556 kb on + strand at 165.596 kb on + strand at 165.597 kb on - strand at 165.615 kb on - strand at 165.773 kb on - strand, within EX31_RS09800 at 165.893 kb on + strand, within EX31_RS09800 at 166.042 kb on + strand, within EX31_RS09800 at 166.075 kb on + strand, within EX31_RS09800 at 166.101 kb on + strand, within EX31_RS09800 at 166.102 kb on - strand, within EX31_RS09800 at 166.256 kb on + strand, within EX31_RS09800 at 166.257 kb on - strand, within EX31_RS09800 at 166.257 kb on - strand, within EX31_RS09800 at 166.263 kb on - strand, within EX31_RS09800 at 166.263 kb on - strand, within EX31_RS09800 at 166.263 kb on - strand, within EX31_RS09800 at 166.287 kb on + strand, within EX31_RS09800 at 166.336 kb on - strand, within EX31_RS09800 at 166.491 kb on + strand, within EX31_RS09800 at 166.492 kb on - strand, within EX31_RS09800 at 166.518 kb on + strand, within EX31_RS09800 at 166.518 kb on + strand, within EX31_RS09800 at 166.560 kb on - strand, within EX31_RS09800
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 163,701 + EX31_RS09790 0.23 -1.0 163,701 + EX31_RS09790 0.23 +1.6 163,785 + EX31_RS09790 0.32 -1.4 164,109 + EX31_RS09790 0.63 +1.4 164,110 - EX31_RS09790 0.63 +0.0 164,209 + EX31_RS09790 0.73 +0.2 164,246 + EX31_RS09790 0.77 +0.5 164,381 - EX31_RS09790 0.90 -0.1 164,381 - EX31_RS09790 0.90 +0.3 164,420 + -0.5 164,421 - -0.3 164,466 + -1.0 164,466 + +0.8 164,466 + -0.3 164,492 - +0.5 164,492 - +0.4 164,512 - +0.2 164,603 + EX31_RS09795 0.11 -0.6 164,603 + EX31_RS09795 0.11 -0.7 164,604 - EX31_RS09795 0.11 -0.3 164,604 - EX31_RS09795 0.11 -1.0 164,604 - EX31_RS09795 0.11 +0.3 164,604 - EX31_RS09795 0.11 -0.5 164,604 - EX31_RS09795 0.11 -0.8 164,657 - EX31_RS09795 0.16 +0.8 164,716 + EX31_RS09795 0.21 +0.3 164,728 + EX31_RS09795 0.23 -0.1 164,728 + EX31_RS09795 0.23 +0.4 164,729 - EX31_RS09795 0.23 -0.5 164,940 + EX31_RS09795 0.42 -0.8 164,941 - EX31_RS09795 0.42 -1.0 164,941 - EX31_RS09795 0.42 +0.9 165,002 + EX31_RS09795 0.48 -1.3 165,003 - EX31_RS09795 0.48 -2.2 165,181 + EX31_RS09795 0.65 -1.7 165,182 - EX31_RS09795 0.65 -0.9 165,182 - EX31_RS09795 0.65 -1.6 165,220 - EX31_RS09795 0.68 -1.0 165,263 - EX31_RS09795 0.72 -0.2 165,556 + -0.2 165,596 + -1.2 165,597 - -0.9 165,615 - +0.2 165,773 - EX31_RS09800 0.14 -0.4 165,893 + EX31_RS09800 0.22 -0.4 166,042 + EX31_RS09800 0.31 -0.6 166,075 + EX31_RS09800 0.33 -2.2 166,101 + EX31_RS09800 0.35 -0.3 166,102 - EX31_RS09800 0.35 -1.3 166,256 + EX31_RS09800 0.45 +0.7 166,257 - EX31_RS09800 0.45 +0.3 166,257 - EX31_RS09800 0.45 -0.1 166,263 - EX31_RS09800 0.45 -0.5 166,263 - EX31_RS09800 0.45 -3.4 166,263 - EX31_RS09800 0.45 +1.3 166,287 + EX31_RS09800 0.47 +0.7 166,336 - EX31_RS09800 0.50 +1.2 166,491 + EX31_RS09800 0.60 -0.3 166,492 - EX31_RS09800 0.60 +0.3 166,518 + EX31_RS09800 0.62 -0.1 166,518 + EX31_RS09800 0.62 -0.7 166,560 - EX31_RS09800 0.64 +0.8
Or see this region's nucleotide sequence