Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09320 and EX31_RS09325 are separated by 385 nucleotides EX31_RS09325 and EX31_RS09330 are separated by 21 nucleotides
EX31_RS09320: EX31_RS09320 - nitrate reductase subunit alpha, at 64,034 to 67,798
_RS09320
EX31_RS09325: EX31_RS09325 - transporter, at 68,184 to 69,203
_RS09325
EX31_RS09330: EX31_RS09330 - chloride channel protein, at 69,225 to 70,928
_RS09330
Position (kb) 68
69
70 Strain fitness (log2 ratio) -2
-1
0
1 at 67.200 kb on + strand, within EX31_RS09320 at 67.201 kb on - strand, within EX31_RS09320 at 67.243 kb on + strand, within EX31_RS09320 at 67.271 kb on - strand, within EX31_RS09320 at 67.272 kb on + strand, within EX31_RS09320 at 67.272 kb on + strand, within EX31_RS09320 at 67.272 kb on + strand, within EX31_RS09320 at 67.272 kb on + strand, within EX31_RS09320 at 67.488 kb on + strand at 67.489 kb on - strand at 67.611 kb on + strand at 67.624 kb on + strand at 67.624 kb on + strand at 67.625 kb on - strand at 67.625 kb on - strand at 67.625 kb on - strand at 67.625 kb on - strand at 67.758 kb on - strand at 67.758 kb on - strand at 67.758 kb on - strand at 67.758 kb on - strand at 67.771 kb on - strand at 67.823 kb on + strand at 67.824 kb on - strand at 67.824 kb on - strand at 67.841 kb on - strand at 67.841 kb on - strand at 67.859 kb on - strand at 67.859 kb on - strand at 67.864 kb on + strand at 67.864 kb on + strand at 67.864 kb on + strand at 67.864 kb on + strand at 67.864 kb on + strand at 67.864 kb on + strand at 67.865 kb on - strand at 67.865 kb on - strand at 67.865 kb on - strand at 67.865 kb on - strand at 67.865 kb on - strand at 67.865 kb on - strand at 67.865 kb on - strand at 67.865 kb on - strand at 67.865 kb on - strand at 67.910 kb on + strand at 67.950 kb on + strand at 67.951 kb on - strand at 67.964 kb on + strand at 67.996 kb on + strand at 68.098 kb on + strand at 68.126 kb on + strand at 68.126 kb on + strand at 68.126 kb on + strand at 68.126 kb on + strand at 68.241 kb on + strand at 68.605 kb on + strand, within EX31_RS09325 at 68.865 kb on - strand, within EX31_RS09325 at 68.865 kb on - strand, within EX31_RS09325 at 68.873 kb on - strand, within EX31_RS09325 at 69.018 kb on + strand, within EX31_RS09325 at 69.019 kb on - strand, within EX31_RS09325 at 69.019 kb on - strand, within EX31_RS09325 at 69.174 kb on + strand at 69.182 kb on - strand at 69.506 kb on - strand, within EX31_RS09330 at 69.506 kb on - strand, within EX31_RS09330 at 69.506 kb on - strand, within EX31_RS09330 at 69.506 kb on - strand, within EX31_RS09330 at 69.568 kb on + strand, within EX31_RS09330 at 69.701 kb on - strand, within EX31_RS09330 at 69.701 kb on - strand, within EX31_RS09330 at 69.832 kb on + strand, within EX31_RS09330 at 69.833 kb on - strand, within EX31_RS09330 at 69.833 kb on - strand, within EX31_RS09330 at 69.833 kb on - strand, within EX31_RS09330 at 69.833 kb on - strand, within EX31_RS09330 at 69.878 kb on + strand, within EX31_RS09330 at 70.008 kb on + strand, within EX31_RS09330
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 67,200 + EX31_RS09320 0.84 +0.6 67,201 - EX31_RS09320 0.84 +0.5 67,243 + EX31_RS09320 0.85 +0.1 67,271 - EX31_RS09320 0.86 -2.2 67,272 + EX31_RS09320 0.86 -0.3 67,272 + EX31_RS09320 0.86 -0.1 67,272 + EX31_RS09320 0.86 -1.0 67,272 + EX31_RS09320 0.86 +0.6 67,488 + -0.9 67,489 - +0.4 67,611 + +0.4 67,624 + +0.5 67,624 + -1.2 67,625 - -0.2 67,625 - +0.7 67,625 - +1.0 67,625 - +0.3 67,758 - +0.1 67,758 - -0.0 67,758 - -0.2 67,758 - +1.0 67,771 - -1.3 67,823 + +1.0 67,824 - -0.1 67,824 - -0.5 67,841 - +0.1 67,841 - -0.1 67,859 - +0.5 67,859 - +1.6 67,864 + -1.1 67,864 + +0.2 67,864 + +0.3 67,864 + +1.7 67,864 + +1.1 67,864 + -0.7 67,865 - -0.3 67,865 - +1.3 67,865 - -0.2 67,865 - -0.9 67,865 - +1.6 67,865 - -0.5 67,865 - -0.2 67,865 - -0.0 67,865 - -0.3 67,910 + +0.3 67,950 + +0.5 67,951 - +0.6 67,964 + +0.4 67,996 + +0.7 68,098 + +1.1 68,126 + +0.4 68,126 + -0.4 68,126 + -0.8 68,126 + +0.7 68,241 + +0.6 68,605 + EX31_RS09325 0.41 -0.3 68,865 - EX31_RS09325 0.67 -0.6 68,865 - EX31_RS09325 0.67 -1.8 68,873 - EX31_RS09325 0.68 -0.3 69,018 + EX31_RS09325 0.82 -0.7 69,019 - EX31_RS09325 0.82 -0.4 69,019 - EX31_RS09325 0.82 +0.7 69,174 + +0.1 69,182 - -0.4 69,506 - EX31_RS09330 0.16 +0.2 69,506 - EX31_RS09330 0.16 +0.2 69,506 - EX31_RS09330 0.16 +0.3 69,506 - EX31_RS09330 0.16 +0.9 69,568 + EX31_RS09330 0.20 -0.1 69,701 - EX31_RS09330 0.28 -0.1 69,701 - EX31_RS09330 0.28 +0.0 69,832 + EX31_RS09330 0.36 +0.0 69,833 - EX31_RS09330 0.36 -0.4 69,833 - EX31_RS09330 0.36 +0.1 69,833 - EX31_RS09330 0.36 -0.1 69,833 - EX31_RS09330 0.36 -0.5 69,878 + EX31_RS09330 0.38 -0.0 70,008 + EX31_RS09330 0.46 +1.5
Or see this region's nucleotide sequence