Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09065 and EX31_RS24950 are separated by 76 nucleotides EX31_RS24950 and EX31_RS09075 are separated by 77 nucleotides EX31_RS09075 and EX31_RS09080 are separated by 447 nucleotides
EX31_RS09065: EX31_RS09065 - molecular chaperone, at 3,488 to 4,162
_RS09065
EX31_RS24950: EX31_RS24950 - type 1 fimbrial protein, at 4,239 to 4,778
_RS24950
EX31_RS09075: EX31_RS09075 - type 1 fimbrial protein, at 4,856 to 5,383
_RS09075
EX31_RS09080: EX31_RS09080 - LysR family transcriptional regulator, at 5,831 to 6,772
_RS09080
Position (kb) 4
5
6 Strain fitness (log2 ratio) -2
-1
0
1 at 3.898 kb on + strand, within EX31_RS09065 at 3.898 kb on + strand, within EX31_RS09065 at 3.899 kb on - strand, within EX31_RS09065 at 4.001 kb on - strand, within EX31_RS09065 at 4.005 kb on + strand, within EX31_RS09065 at 4.066 kb on - strand, within EX31_RS09065 at 4.069 kb on + strand, within EX31_RS09065 at 4.069 kb on + strand, within EX31_RS09065 at 4.333 kb on + strand, within EX31_RS24950 at 4.857 kb on + strand at 4.858 kb on - strand at 4.863 kb on + strand at 4.864 kb on - strand at 5.024 kb on - strand, within EX31_RS09075 at 5.024 kb on - strand, within EX31_RS09075 at 5.026 kb on + strand, within EX31_RS09075 at 5.027 kb on - strand, within EX31_RS09075 at 5.027 kb on - strand, within EX31_RS09075 at 5.029 kb on - strand, within EX31_RS09075 at 5.069 kb on - strand, within EX31_RS09075 at 5.214 kb on - strand, within EX31_RS09075 at 5.282 kb on - strand, within EX31_RS09075 at 5.282 kb on - strand, within EX31_RS09075 at 5.629 kb on + strand at 5.792 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 3,898 + EX31_RS09065 0.61 -0.3 3,898 + EX31_RS09065 0.61 -0.1 3,899 - EX31_RS09065 0.61 +0.6 4,001 - EX31_RS09065 0.76 +0.5 4,005 + EX31_RS09065 0.77 +0.1 4,066 - EX31_RS09065 0.86 +0.3 4,069 + EX31_RS09065 0.86 -1.0 4,069 + EX31_RS09065 0.86 -1.5 4,333 + EX31_RS24950 0.17 -0.5 4,857 + +0.3 4,858 - +0.3 4,863 + -0.5 4,864 - +0.7 5,024 - EX31_RS09075 0.32 +0.5 5,024 - EX31_RS09075 0.32 +0.0 5,026 + EX31_RS09075 0.32 -0.7 5,027 - EX31_RS09075 0.32 -2.4 5,027 - EX31_RS09075 0.32 -0.6 5,029 - EX31_RS09075 0.33 -0.1 5,069 - EX31_RS09075 0.40 +0.2 5,214 - EX31_RS09075 0.68 +0.1 5,282 - EX31_RS09075 0.81 -0.9 5,282 - EX31_RS09075 0.81 -0.4 5,629 + -1.1 5,792 - +0.3
Or see this region's nucleotide sequence