Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06795 and EX31_RS06800 overlap by 1 nucleotides EX31_RS06800 and EX31_RS06805 overlap by 4 nucleotides EX31_RS06805 and EX31_RS06810 are separated by 274 nucleotides
EX31_RS06795: EX31_RS06795 - ABC transporter ATP-binding protein, at 146,588 to 147,358
_RS06795
EX31_RS06800: EX31_RS06800 - ABC transporter permease, at 147,358 to 148,167
_RS06800
EX31_RS06805: EX31_RS06805 - ABC transporter substrate-binding protein, at 148,164 to 149,171
_RS06805
EX31_RS06810: EX31_RS06810 - LysR family transcriptional regulator, at 149,446 to 150,426
_RS06810
Position (kb) 148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 147.212 kb on + strand, within EX31_RS06795 at 147.213 kb on - strand, within EX31_RS06795 at 147.213 kb on - strand, within EX31_RS06795 at 147.213 kb on - strand, within EX31_RS06795 at 147.435 kb on + strand at 147.815 kb on + strand, within EX31_RS06800 at 147.816 kb on - strand, within EX31_RS06800 at 147.945 kb on + strand, within EX31_RS06800 at 147.946 kb on - strand, within EX31_RS06800 at 147.946 kb on - strand, within EX31_RS06800 at 148.070 kb on - strand, within EX31_RS06800 at 148.319 kb on - strand, within EX31_RS06805 at 148.322 kb on - strand, within EX31_RS06805 at 148.322 kb on - strand, within EX31_RS06805 at 148.403 kb on + strand, within EX31_RS06805 at 148.404 kb on - strand, within EX31_RS06805 at 148.480 kb on - strand, within EX31_RS06805 at 148.581 kb on - strand, within EX31_RS06805 at 148.583 kb on - strand, within EX31_RS06805 at 148.592 kb on - strand, within EX31_RS06805 at 148.592 kb on - strand, within EX31_RS06805 at 148.695 kb on - strand, within EX31_RS06805 at 148.825 kb on - strand, within EX31_RS06805 at 149.171 kb on + strand at 149.239 kb on - strand at 149.312 kb on + strand at 149.329 kb on - strand at 149.352 kb on + strand at 149.354 kb on + strand at 149.423 kb on + strand at 149.425 kb on + strand at 149.499 kb on - strand at 149.599 kb on - strand, within EX31_RS06810 at 149.794 kb on + strand, within EX31_RS06810 at 149.846 kb on + strand, within EX31_RS06810 at 149.862 kb on - strand, within EX31_RS06810 at 150.002 kb on + strand, within EX31_RS06810
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 147,212 + EX31_RS06795 0.81 -0.4 147,213 - EX31_RS06795 0.81 -0.9 147,213 - EX31_RS06795 0.81 -0.3 147,213 - EX31_RS06795 0.81 -1.0 147,435 + -0.4 147,815 + EX31_RS06800 0.56 -3.0 147,816 - EX31_RS06800 0.57 -1.4 147,945 + EX31_RS06800 0.72 -1.1 147,946 - EX31_RS06800 0.73 +0.8 147,946 - EX31_RS06800 0.73 -0.3 148,070 - EX31_RS06800 0.88 +0.1 148,319 - EX31_RS06805 0.15 -1.0 148,322 - EX31_RS06805 0.16 +0.6 148,322 - EX31_RS06805 0.16 +0.1 148,403 + EX31_RS06805 0.24 -0.3 148,404 - EX31_RS06805 0.24 +0.3 148,480 - EX31_RS06805 0.31 -0.4 148,581 - EX31_RS06805 0.41 +0.5 148,583 - EX31_RS06805 0.42 -0.4 148,592 - EX31_RS06805 0.42 +1.4 148,592 - EX31_RS06805 0.42 +0.6 148,695 - EX31_RS06805 0.53 -0.2 148,825 - EX31_RS06805 0.66 -0.4 149,171 + +0.8 149,239 - -0.2 149,312 + -0.9 149,329 - +0.2 149,352 + +0.0 149,354 + -0.8 149,423 + +0.1 149,425 + +0.3 149,499 - -1.0 149,599 - EX31_RS06810 0.16 +1.0 149,794 + EX31_RS06810 0.35 -1.0 149,846 + EX31_RS06810 0.41 +0.6 149,862 - EX31_RS06810 0.42 +0.9 150,002 + EX31_RS06810 0.57 -0.7
Or see this region's nucleotide sequence