Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10065 and EX31_RS25990 are separated by 376 nucleotides EX31_RS25990 and EX31_RS10070 are separated by 594 nucleotides
EX31_RS10065: EX31_RS10065 - oligopeptide ABC transporter substrate-binding protein OppA, at 219,190 to 220,830
_RS10065
EX31_RS25990: EX31_RS25990 - hypothetical protein, at 221,207 to 221,410
_RS25990
EX31_RS10070: EX31_RS10070 - YchE family NAAT transporter, at 222,005 to 222,649
_RS10070
Position (kb) 221
222 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 220.283 kb on + strand, within EX31_RS10065 at 220.348 kb on - strand, within EX31_RS10065 at 220.459 kb on - strand, within EX31_RS10065 at 220.481 kb on - strand, within EX31_RS10065 at 220.537 kb on - strand, within EX31_RS10065 at 220.565 kb on - strand, within EX31_RS10065 at 220.600 kb on - strand, within EX31_RS10065 at 220.600 kb on - strand, within EX31_RS10065 at 220.600 kb on - strand, within EX31_RS10065 at 220.636 kb on - strand, within EX31_RS10065 at 220.778 kb on - strand at 220.852 kb on - strand at 220.852 kb on - strand at 220.945 kb on + strand at 220.945 kb on + strand at 220.945 kb on + strand at 220.945 kb on + strand at 220.946 kb on - strand at 220.946 kb on - strand at 220.946 kb on - strand at 220.946 kb on - strand at 220.946 kb on - strand at 220.946 kb on - strand at 220.946 kb on - strand at 220.946 kb on - strand at 220.946 kb on - strand at 220.946 kb on - strand at 220.946 kb on - strand at 220.946 kb on - strand at 220.949 kb on + strand at 220.977 kb on - strand at 220.977 kb on - strand at 220.977 kb on - strand at 220.985 kb on + strand at 220.985 kb on + strand at 220.985 kb on + strand at 220.985 kb on + strand at 220.986 kb on - strand at 220.986 kb on - strand at 220.986 kb on - strand at 220.986 kb on - strand at 220.986 kb on - strand at 220.986 kb on - strand at 220.986 kb on - strand at 220.986 kb on - strand at 220.986 kb on - strand at 220.986 kb on - strand at 220.986 kb on - strand at 220.986 kb on - strand at 220.986 kb on - strand at 220.989 kb on - strand at 221.113 kb on - strand at 221.120 kb on + strand at 221.120 kb on + strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.121 kb on - strand at 221.127 kb on - strand at 221.145 kb on - strand at 221.147 kb on + strand at 221.148 kb on - strand at 221.156 kb on - strand at 221.191 kb on - strand at 221.191 kb on - strand at 221.209 kb on - strand at 221.269 kb on + strand, within EX31_RS25990 at 221.270 kb on - strand, within EX31_RS25990 at 221.270 kb on - strand, within EX31_RS25990 at 221.270 kb on - strand, within EX31_RS25990 at 221.349 kb on + strand, within EX31_RS25990 at 221.367 kb on - strand, within EX31_RS25990 at 221.392 kb on + strand at 221.393 kb on - strand at 221.670 kb on - strand at 221.697 kb on + strand at 221.710 kb on - strand at 221.719 kb on - strand at 221.719 kb on - strand at 221.747 kb on + strand at 221.883 kb on - strand at 221.903 kb on - strand at 221.911 kb on - strand at 221.919 kb on + strand at 221.919 kb on + strand at 221.919 kb on + strand at 221.921 kb on + strand at 221.921 kb on + strand at 221.921 kb on + strand at 221.921 kb on + strand at 221.922 kb on - strand at 221.940 kb on - strand at 221.953 kb on - strand at 221.987 kb on - strand at 222.025 kb on + strand at 222.032 kb on - strand at 222.047 kb on - strand at 222.047 kb on - strand at 222.085 kb on + strand, within EX31_RS10070 at 222.086 kb on - strand, within EX31_RS10070 at 222.092 kb on - strand, within EX31_RS10070 at 222.101 kb on - strand, within EX31_RS10070 at 222.178 kb on + strand, within EX31_RS10070 at 222.233 kb on + strand, within EX31_RS10070 at 222.234 kb on - strand, within EX31_RS10070 at 222.234 kb on - strand, within EX31_RS10070 at 222.234 kb on - strand, within EX31_RS10070 at 222.234 kb on - strand, within EX31_RS10070 at 222.276 kb on - strand, within EX31_RS10070
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 220,283 + EX31_RS10065 0.67 -0.4 220,348 - EX31_RS10065 0.71 +0.6 220,459 - EX31_RS10065 0.77 -0.9 220,481 - EX31_RS10065 0.79 -0.3 220,537 - EX31_RS10065 0.82 -0.6 220,565 - EX31_RS10065 0.84 -0.5 220,600 - EX31_RS10065 0.86 +0.2 220,600 - EX31_RS10065 0.86 -0.1 220,600 - EX31_RS10065 0.86 -0.4 220,636 - EX31_RS10065 0.88 -0.1 220,778 - -0.2 220,852 - +0.2 220,852 - +0.6 220,945 + +0.1 220,945 + -0.9 220,945 + +2.4 220,945 + -0.4 220,946 - +0.5 220,946 - +0.2 220,946 - +0.4 220,946 - -0.0 220,946 - -0.7 220,946 - -0.3 220,946 - +0.3 220,946 - +0.1 220,946 - -0.5 220,946 - +0.3 220,946 - -0.8 220,946 - +0.2 220,949 + +0.9 220,977 - -0.4 220,977 - -0.6 220,977 - +0.6 220,985 + -0.4 220,985 + +0.2 220,985 + -0.1 220,985 + -3.0 220,986 - +0.7 220,986 - +0.6 220,986 - +0.2 220,986 - +0.4 220,986 - +0.4 220,986 - -0.7 220,986 - -0.0 220,986 - +0.3 220,986 - -0.4 220,986 - +0.2 220,986 - +0.2 220,986 - +0.3 220,986 - +0.4 220,989 - -0.3 221,113 - +0.4 221,120 + +0.1 221,120 + +0.0 221,121 - +0.1 221,121 - -0.0 221,121 - +0.1 221,121 - +0.2 221,121 - +0.0 221,121 - +0.2 221,121 - -2.5 221,121 - +0.4 221,121 - -0.1 221,121 - +1.4 221,121 - -0.0 221,121 - +1.0 221,121 - -0.0 221,121 - +0.1 221,121 - +0.0 221,121 - -0.3 221,121 - +1.0 221,127 - -0.3 221,145 - +0.5 221,147 + +0.6 221,148 - -0.1 221,156 - +0.2 221,191 - +0.5 221,191 - -0.4 221,209 - -0.7 221,269 + EX31_RS25990 0.30 -0.5 221,270 - EX31_RS25990 0.31 -0.4 221,270 - EX31_RS25990 0.31 -0.4 221,270 - EX31_RS25990 0.31 -1.2 221,349 + EX31_RS25990 0.70 -2.2 221,367 - EX31_RS25990 0.78 -0.5 221,392 + -0.4 221,393 - +0.4 221,670 - +0.2 221,697 + -0.8 221,710 - -0.3 221,719 - +0.0 221,719 - -0.3 221,747 + -0.8 221,883 - -0.1 221,903 - +0.0 221,911 - -0.6 221,919 + -1.1 221,919 + -1.4 221,919 + -0.6 221,921 + -0.2 221,921 + -1.4 221,921 + +0.9 221,921 + -3.3 221,922 - +0.2 221,940 - -0.4 221,953 - +0.3 221,987 - +0.7 222,025 + -1.1 222,032 - +0.8 222,047 - +0.9 222,047 - -0.2 222,085 + EX31_RS10070 0.12 +1.2 222,086 - EX31_RS10070 0.13 +0.6 222,092 - EX31_RS10070 0.13 -0.4 222,101 - EX31_RS10070 0.15 -1.3 222,178 + EX31_RS10070 0.27 +1.6 222,233 + EX31_RS10070 0.35 +1.0 222,234 - EX31_RS10070 0.36 -1.7 222,234 - EX31_RS10070 0.36 +0.4 222,234 - EX31_RS10070 0.36 -0.5 222,234 - EX31_RS10070 0.36 +0.1 222,276 - EX31_RS10070 0.42 +0.9
Or see this region's nucleotide sequence