Strain Fitness in Rahnella sp. WP5 around EX31_RS25245

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07705 and EX31_RS25245 are separated by 64 nucleotidesEX31_RS25245 and EX31_RS07710 are separated by 93 nucleotidesEX31_RS07710 and EX31_RS07715 are separated by 48 nucleotides EX31_RS07705: EX31_RS07705 - tail protein, at 23,855 to 24,955 _RS07705 EX31_RS25245: EX31_RS25245 - late control protein B, at 25,020 to 25,199 _RS25245 EX31_RS07710: EX31_RS07710 - 50S ribosomal protein L19, at 25,293 to 25,640 _RS07710 EX31_RS07715: EX31_RS07715 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 25,689 to 26,462 _RS07715 Position (kb) 25 26Strain fitness (log2 ratio) -1 0 1at 24.063 kb on + strand, within EX31_RS07705at 24.063 kb on + strand, within EX31_RS07705at 24.063 kb on + strand, within EX31_RS07705at 24.064 kb on - strand, within EX31_RS07705at 24.064 kb on - strand, within EX31_RS07705at 24.064 kb on - strand, within EX31_RS07705at 24.064 kb on - strand, within EX31_RS07705at 24.064 kb on - strand, within EX31_RS07705at 24.098 kb on + strand, within EX31_RS07705at 24.098 kb on + strand, within EX31_RS07705at 24.098 kb on + strand, within EX31_RS07705at 24.099 kb on - strand, within EX31_RS07705at 24.099 kb on - strand, within EX31_RS07705at 24.111 kb on - strand, within EX31_RS07705at 24.125 kb on - strand, within EX31_RS07705at 24.156 kb on + strand, within EX31_RS07705at 24.156 kb on + strand, within EX31_RS07705at 24.156 kb on + strand, within EX31_RS07705at 24.156 kb on + strand, within EX31_RS07705at 24.156 kb on + strand, within EX31_RS07705at 24.156 kb on + strand, within EX31_RS07705at 24.157 kb on - strand, within EX31_RS07705at 24.218 kb on + strand, within EX31_RS07705at 24.219 kb on - strand, within EX31_RS07705at 24.228 kb on - strand, within EX31_RS07705at 24.273 kb on + strand, within EX31_RS07705at 24.311 kb on - strand, within EX31_RS07705at 24.323 kb on - strand, within EX31_RS07705at 24.350 kb on + strand, within EX31_RS07705at 24.377 kb on + strand, within EX31_RS07705at 24.378 kb on - strand, within EX31_RS07705at 24.378 kb on - strand, within EX31_RS07705at 24.391 kb on - strand, within EX31_RS07705at 24.503 kb on + strand, within EX31_RS07705at 24.504 kb on - strand, within EX31_RS07705at 24.504 kb on - strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.528 kb on - strand, within EX31_RS07705at 24.632 kb on + strand, within EX31_RS07705at 24.632 kb on + strand, within EX31_RS07705at 24.632 kb on + strand, within EX31_RS07705at 24.632 kb on + strand, within EX31_RS07705at 24.632 kb on + strand, within EX31_RS07705at 24.633 kb on - strand, within EX31_RS07705at 24.633 kb on - strand, within EX31_RS07705at 24.697 kb on + strand, within EX31_RS07705at 24.756 kb on + strand, within EX31_RS07705at 24.913 kb on + strandat 24.922 kb on + strandat 24.981 kb on + strandat 24.981 kb on + strandat 24.981 kb on + strandat 24.982 kb on - strandat 24.982 kb on - strandat 24.982 kb on - strandat 24.998 kb on - strandat 25.005 kb on - strandat 25.019 kb on + strandat 25.049 kb on - strand, within EX31_RS25245at 25.056 kb on - strand, within EX31_RS25245at 25.056 kb on - strand, within EX31_RS25245at 25.072 kb on - strand, within EX31_RS25245at 25.116 kb on - strand, within EX31_RS25245at 25.130 kb on + strand, within EX31_RS25245at 25.130 kb on + strand, within EX31_RS25245at 25.131 kb on - strand, within EX31_RS25245at 25.260 kb on - strandat 25.260 kb on - strandat 25.269 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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24,063 + EX31_RS07705 0.19 +0.2
24,063 + EX31_RS07705 0.19 +0.1
24,063 + EX31_RS07705 0.19 -0.1
24,064 - EX31_RS07705 0.19 -0.7
24,064 - EX31_RS07705 0.19 -0.6
24,064 - EX31_RS07705 0.19 -0.4
24,064 - EX31_RS07705 0.19 -0.2
24,064 - EX31_RS07705 0.19 -0.3
24,098 + EX31_RS07705 0.22 +0.1
24,098 + EX31_RS07705 0.22 +0.3
24,098 + EX31_RS07705 0.22 +0.1
24,099 - EX31_RS07705 0.22 -0.0
24,099 - EX31_RS07705 0.22 +0.2
24,111 - EX31_RS07705 0.23 +1.1
24,125 - EX31_RS07705 0.25 +0.8
24,156 + EX31_RS07705 0.27 -0.6
24,156 + EX31_RS07705 0.27 -1.3
24,156 + EX31_RS07705 0.27 +0.3
24,156 + EX31_RS07705 0.27 +0.3
24,156 + EX31_RS07705 0.27 -0.3
24,156 + EX31_RS07705 0.27 -0.1
24,157 - EX31_RS07705 0.27 -0.5
24,218 + EX31_RS07705 0.33 +0.7
24,219 - EX31_RS07705 0.33 -0.3
24,228 - EX31_RS07705 0.34 +0.2
24,273 + EX31_RS07705 0.38 +0.0
24,311 - EX31_RS07705 0.41 +0.5
24,323 - EX31_RS07705 0.43 +0.8
24,350 + EX31_RS07705 0.45 -0.4
24,377 + EX31_RS07705 0.47 +0.2
24,378 - EX31_RS07705 0.48 +0.6
24,378 - EX31_RS07705 0.48 +0.1
24,391 - EX31_RS07705 0.49 -0.7
24,503 + EX31_RS07705 0.59 +0.1
24,504 - EX31_RS07705 0.59 -0.4
24,504 - EX31_RS07705 0.59 +0.3
24,527 + EX31_RS07705 0.61 -1.3
24,527 + EX31_RS07705 0.61 -0.3
24,527 + EX31_RS07705 0.61 +0.3
24,527 + EX31_RS07705 0.61 -0.8
24,527 + EX31_RS07705 0.61 +0.2
24,527 + EX31_RS07705 0.61 -0.7
24,527 + EX31_RS07705 0.61 +0.6
24,527 + EX31_RS07705 0.61 +0.7
24,528 - EX31_RS07705 0.61 -0.1
24,632 + EX31_RS07705 0.71 -0.8
24,632 + EX31_RS07705 0.71 +1.2
24,632 + EX31_RS07705 0.71 +0.0
24,632 + EX31_RS07705 0.71 +0.6
24,632 + EX31_RS07705 0.71 -0.5
24,633 - EX31_RS07705 0.71 -0.5
24,633 - EX31_RS07705 0.71 +0.1
24,697 + EX31_RS07705 0.76 -1.1
24,756 + EX31_RS07705 0.82 -0.9
24,913 + -0.1
24,922 + -0.3
24,981 + +0.1
24,981 + -0.6
24,981 + -0.1
24,982 - -0.5
24,982 - -0.5
24,982 - -1.1
24,998 - -0.8
25,005 - +0.8
25,019 + +0.3
25,049 - EX31_RS25245 0.16 +1.1
25,056 - EX31_RS25245 0.20 -0.2
25,056 - EX31_RS25245 0.20 -0.5
25,072 - EX31_RS25245 0.29 -1.3
25,116 - EX31_RS25245 0.53 -1.5
25,130 + EX31_RS25245 0.61 -0.7
25,130 + EX31_RS25245 0.61 -0.5
25,131 - EX31_RS25245 0.62 -1.0
25,260 - -0.3
25,260 - +0.1
25,269 - +0.9

Or see this region's nucleotide sequence