Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07705 and EX31_RS25245 are separated by 64 nucleotides EX31_RS25245 and EX31_RS07710 are separated by 93 nucleotides EX31_RS07710 and EX31_RS07715 are separated by 48 nucleotides
EX31_RS07705: EX31_RS07705 - tail protein, at 23,855 to 24,955
_RS07705
EX31_RS25245: EX31_RS25245 - late control protein B, at 25,020 to 25,199
_RS25245
EX31_RS07710: EX31_RS07710 - 50S ribosomal protein L19, at 25,293 to 25,640
_RS07710
EX31_RS07715: EX31_RS07715 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 25,689 to 26,462
_RS07715
Position (kb)
25
26 Strain fitness (log2 ratio)
-1
0
1 at 24.063 kb on + strand, within EX31_RS07705 at 24.063 kb on + strand, within EX31_RS07705 at 24.063 kb on + strand, within EX31_RS07705 at 24.064 kb on - strand, within EX31_RS07705 at 24.064 kb on - strand, within EX31_RS07705 at 24.064 kb on - strand, within EX31_RS07705 at 24.064 kb on - strand, within EX31_RS07705 at 24.064 kb on - strand, within EX31_RS07705 at 24.098 kb on + strand, within EX31_RS07705 at 24.098 kb on + strand, within EX31_RS07705 at 24.098 kb on + strand, within EX31_RS07705 at 24.099 kb on - strand, within EX31_RS07705 at 24.099 kb on - strand, within EX31_RS07705 at 24.111 kb on - strand, within EX31_RS07705 at 24.125 kb on - strand, within EX31_RS07705 at 24.156 kb on + strand, within EX31_RS07705 at 24.156 kb on + strand, within EX31_RS07705 at 24.156 kb on + strand, within EX31_RS07705 at 24.156 kb on + strand, within EX31_RS07705 at 24.156 kb on + strand, within EX31_RS07705 at 24.156 kb on + strand, within EX31_RS07705 at 24.157 kb on - strand, within EX31_RS07705 at 24.218 kb on + strand, within EX31_RS07705 at 24.219 kb on - strand, within EX31_RS07705 at 24.228 kb on - strand, within EX31_RS07705 at 24.273 kb on + strand, within EX31_RS07705 at 24.311 kb on - strand, within EX31_RS07705 at 24.323 kb on - strand, within EX31_RS07705 at 24.350 kb on + strand, within EX31_RS07705 at 24.377 kb on + strand, within EX31_RS07705 at 24.378 kb on - strand, within EX31_RS07705 at 24.378 kb on - strand, within EX31_RS07705 at 24.391 kb on - strand, within EX31_RS07705 at 24.503 kb on + strand, within EX31_RS07705 at 24.504 kb on - strand, within EX31_RS07705 at 24.504 kb on - strand, within EX31_RS07705 at 24.527 kb on + strand, within EX31_RS07705 at 24.527 kb on + strand, within EX31_RS07705 at 24.527 kb on + strand, within EX31_RS07705 at 24.527 kb on + strand, within EX31_RS07705 at 24.527 kb on + strand, within EX31_RS07705 at 24.527 kb on + strand, within EX31_RS07705 at 24.527 kb on + strand, within EX31_RS07705 at 24.527 kb on + strand, within EX31_RS07705 at 24.528 kb on - strand, within EX31_RS07705 at 24.632 kb on + strand, within EX31_RS07705 at 24.632 kb on + strand, within EX31_RS07705 at 24.632 kb on + strand, within EX31_RS07705 at 24.632 kb on + strand, within EX31_RS07705 at 24.632 kb on + strand, within EX31_RS07705 at 24.633 kb on - strand, within EX31_RS07705 at 24.633 kb on - strand, within EX31_RS07705 at 24.697 kb on + strand, within EX31_RS07705 at 24.756 kb on + strand, within EX31_RS07705 at 24.913 kb on + strand at 24.922 kb on + strand at 24.981 kb on + strand at 24.981 kb on + strand at 24.981 kb on + strand at 24.982 kb on - strand at 24.982 kb on - strand at 24.982 kb on - strand at 24.998 kb on - strand at 25.005 kb on - strand at 25.019 kb on + strand at 25.049 kb on - strand, within EX31_RS25245 at 25.056 kb on - strand, within EX31_RS25245 at 25.056 kb on - strand, within EX31_RS25245 at 25.072 kb on - strand, within EX31_RS25245 at 25.116 kb on - strand, within EX31_RS25245 at 25.130 kb on + strand, within EX31_RS25245 at 25.130 kb on + strand, within EX31_RS25245 at 25.131 kb on - strand, within EX31_RS25245 at 25.260 kb on - strand at 25.260 kb on - strand at 25.269 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 24,063 + EX31_RS07705 0.19 +0.2 24,063 + EX31_RS07705 0.19 +0.1 24,063 + EX31_RS07705 0.19 -0.1 24,064 - EX31_RS07705 0.19 -0.7 24,064 - EX31_RS07705 0.19 -0.6 24,064 - EX31_RS07705 0.19 -0.4 24,064 - EX31_RS07705 0.19 -0.2 24,064 - EX31_RS07705 0.19 -0.3 24,098 + EX31_RS07705 0.22 +0.1 24,098 + EX31_RS07705 0.22 +0.3 24,098 + EX31_RS07705 0.22 +0.1 24,099 - EX31_RS07705 0.22 -0.0 24,099 - EX31_RS07705 0.22 +0.2 24,111 - EX31_RS07705 0.23 +1.1 24,125 - EX31_RS07705 0.25 +0.8 24,156 + EX31_RS07705 0.27 -0.6 24,156 + EX31_RS07705 0.27 -1.3 24,156 + EX31_RS07705 0.27 +0.3 24,156 + EX31_RS07705 0.27 +0.3 24,156 + EX31_RS07705 0.27 -0.3 24,156 + EX31_RS07705 0.27 -0.1 24,157 - EX31_RS07705 0.27 -0.5 24,218 + EX31_RS07705 0.33 +0.7 24,219 - EX31_RS07705 0.33 -0.3 24,228 - EX31_RS07705 0.34 +0.2 24,273 + EX31_RS07705 0.38 +0.0 24,311 - EX31_RS07705 0.41 +0.5 24,323 - EX31_RS07705 0.43 +0.8 24,350 + EX31_RS07705 0.45 -0.4 24,377 + EX31_RS07705 0.47 +0.2 24,378 - EX31_RS07705 0.48 +0.6 24,378 - EX31_RS07705 0.48 +0.1 24,391 - EX31_RS07705 0.49 -0.7 24,503 + EX31_RS07705 0.59 +0.1 24,504 - EX31_RS07705 0.59 -0.4 24,504 - EX31_RS07705 0.59 +0.3 24,527 + EX31_RS07705 0.61 -1.3 24,527 + EX31_RS07705 0.61 -0.3 24,527 + EX31_RS07705 0.61 +0.3 24,527 + EX31_RS07705 0.61 -0.8 24,527 + EX31_RS07705 0.61 +0.2 24,527 + EX31_RS07705 0.61 -0.7 24,527 + EX31_RS07705 0.61 +0.6 24,527 + EX31_RS07705 0.61 +0.7 24,528 - EX31_RS07705 0.61 -0.1 24,632 + EX31_RS07705 0.71 -0.8 24,632 + EX31_RS07705 0.71 +1.2 24,632 + EX31_RS07705 0.71 +0.0 24,632 + EX31_RS07705 0.71 +0.6 24,632 + EX31_RS07705 0.71 -0.5 24,633 - EX31_RS07705 0.71 -0.5 24,633 - EX31_RS07705 0.71 +0.1 24,697 + EX31_RS07705 0.76 -1.1 24,756 + EX31_RS07705 0.82 -0.9 24,913 + -0.1 24,922 + -0.3 24,981 + +0.1 24,981 + -0.6 24,981 + -0.1 24,982 - -0.5 24,982 - -0.5 24,982 - -1.1 24,998 - -0.8 25,005 - +0.8 25,019 + +0.3 25,049 - EX31_RS25245 0.16 +1.1 25,056 - EX31_RS25245 0.20 -0.2 25,056 - EX31_RS25245 0.20 -0.5 25,072 - EX31_RS25245 0.29 -1.3 25,116 - EX31_RS25245 0.53 -1.5 25,130 + EX31_RS25245 0.61 -0.7 25,130 + EX31_RS25245 0.61 -0.5 25,131 - EX31_RS25245 0.62 -1.0 25,260 - -0.3 25,260 - +0.1 25,269 - +0.9
Or see this region's nucleotide sequence