Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24360 and EX31_RS24365 are separated by 301 nucleotides EX31_RS24365 and EX31_RS24370 are separated by 199 nucleotides
EX31_RS24360: EX31_RS24360 - AI-2E family transporter, at 639,876 to 640,919
_RS24360
EX31_RS24365: EX31_RS24365 - response regulator transcription factor, at 641,221 to 641,889
_RS24365
EX31_RS24370: EX31_RS24370 - N-methyl-L-tryptophan oxidase, at 642,089 to 643,204
_RS24370
Position (kb)
641
642 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 640.254 kb on + strand, within EX31_RS24360 at 640.254 kb on + strand, within EX31_RS24360 at 640.255 kb on - strand, within EX31_RS24360 at 640.255 kb on - strand, within EX31_RS24360 at 640.280 kb on + strand, within EX31_RS24360 at 640.294 kb on + strand, within EX31_RS24360 at 640.302 kb on + strand, within EX31_RS24360 at 640.302 kb on + strand, within EX31_RS24360 at 640.303 kb on - strand, within EX31_RS24360 at 640.303 kb on - strand, within EX31_RS24360 at 640.428 kb on - strand, within EX31_RS24360 at 640.462 kb on - strand, within EX31_RS24360 at 640.578 kb on + strand, within EX31_RS24360 at 640.677 kb on + strand, within EX31_RS24360 at 640.677 kb on + strand, within EX31_RS24360 at 640.677 kb on + strand, within EX31_RS24360 at 640.678 kb on - strand, within EX31_RS24360 at 640.678 kb on - strand, within EX31_RS24360 at 640.678 kb on - strand, within EX31_RS24360 at 640.678 kb on - strand, within EX31_RS24360 at 640.678 kb on - strand, within EX31_RS24360 at 640.678 kb on - strand, within EX31_RS24360 at 640.678 kb on - strand, within EX31_RS24360 at 640.679 kb on + strand, within EX31_RS24360 at 640.680 kb on - strand, within EX31_RS24360 at 640.763 kb on + strand, within EX31_RS24360 at 640.763 kb on + strand, within EX31_RS24360 at 640.843 kb on + strand at 641.027 kb on + strand at 641.028 kb on - strand at 641.066 kb on + strand at 641.145 kb on + strand at 641.145 kb on + strand at 641.145 kb on + strand at 641.168 kb on + strand at 641.179 kb on - strand at 641.222 kb on + strand at 641.222 kb on + strand at 641.223 kb on - strand at 641.290 kb on - strand, within EX31_RS24365 at 641.393 kb on + strand, within EX31_RS24365 at 641.393 kb on + strand, within EX31_RS24365 at 641.394 kb on - strand, within EX31_RS24365 at 641.394 kb on - strand, within EX31_RS24365 at 641.394 kb on - strand, within EX31_RS24365 at 641.394 kb on - strand, within EX31_RS24365 at 641.396 kb on - strand, within EX31_RS24365 at 641.488 kb on - strand, within EX31_RS24365 at 641.491 kb on + strand, within EX31_RS24365 at 641.515 kb on - strand, within EX31_RS24365 at 641.527 kb on - strand, within EX31_RS24365 at 641.648 kb on + strand, within EX31_RS24365 at 641.648 kb on + strand, within EX31_RS24365 at 641.655 kb on - strand, within EX31_RS24365 at 641.657 kb on - strand, within EX31_RS24365 at 641.916 kb on - strand at 641.955 kb on - strand at 641.966 kb on + strand at 642.157 kb on + strand at 642.161 kb on + strand at 642.161 kb on + strand at 642.161 kb on + strand at 642.162 kb on - strand at 642.171 kb on - strand at 642.173 kb on + strand at 642.174 kb on - strand at 642.204 kb on - strand, within EX31_RS24370 at 642.280 kb on - strand, within EX31_RS24370 at 642.424 kb on + strand, within EX31_RS24370 at 642.424 kb on + strand, within EX31_RS24370 at 642.425 kb on - strand, within EX31_RS24370 at 642.429 kb on - strand, within EX31_RS24370 at 642.433 kb on + strand, within EX31_RS24370 at 642.434 kb on - strand, within EX31_RS24370 at 642.434 kb on - strand, within EX31_RS24370 at 642.493 kb on + strand, within EX31_RS24370 at 642.493 kb on + strand, within EX31_RS24370 at 642.494 kb on - strand, within EX31_RS24370 at 642.494 kb on - strand, within EX31_RS24370 at 642.494 kb on - strand, within EX31_RS24370 at 642.556 kb on + strand, within EX31_RS24370 at 642.557 kb on - strand, within EX31_RS24370 at 642.656 kb on + strand, within EX31_RS24370 at 642.683 kb on - strand, within EX31_RS24370 at 642.686 kb on - strand, within EX31_RS24370 at 642.708 kb on - strand, within EX31_RS24370 at 642.708 kb on - strand, within EX31_RS24370 at 642.744 kb on + strand, within EX31_RS24370 at 642.744 kb on + strand, within EX31_RS24370 at 642.745 kb on - strand, within EX31_RS24370 at 642.745 kb on - strand, within EX31_RS24370 at 642.793 kb on - strand, within EX31_RS24370 at 642.793 kb on - strand, within EX31_RS24370 at 642.794 kb on + strand, within EX31_RS24370 at 642.794 kb on + strand, within EX31_RS24370 at 642.794 kb on + strand, within EX31_RS24370 at 642.794 kb on + strand, within EX31_RS24370 at 642.794 kb on + strand, within EX31_RS24370 at 642.794 kb on + strand, within EX31_RS24370 at 642.795 kb on - strand, within EX31_RS24370 at 642.795 kb on - strand, within EX31_RS24370 at 642.866 kb on + strand, within EX31_RS24370 at 642.866 kb on + strand, within EX31_RS24370 at 642.867 kb on - strand, within EX31_RS24370 at 642.867 kb on - strand, within EX31_RS24370 at 642.880 kb on - strand, within EX31_RS24370
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 640,254 + EX31_RS24360 0.36 -0.2 640,254 + EX31_RS24360 0.36 +1.1 640,255 - EX31_RS24360 0.36 -2.4 640,255 - EX31_RS24360 0.36 -0.6 640,280 + EX31_RS24360 0.39 +0.5 640,294 + EX31_RS24360 0.40 -0.1 640,302 + EX31_RS24360 0.41 +0.4 640,302 + EX31_RS24360 0.41 +0.4 640,303 - EX31_RS24360 0.41 -1.0 640,303 - EX31_RS24360 0.41 +0.8 640,428 - EX31_RS24360 0.53 +0.1 640,462 - EX31_RS24360 0.56 -0.9 640,578 + EX31_RS24360 0.67 +0.2 640,677 + EX31_RS24360 0.77 +0.2 640,677 + EX31_RS24360 0.77 +0.4 640,677 + EX31_RS24360 0.77 +0.6 640,678 - EX31_RS24360 0.77 -0.1 640,678 - EX31_RS24360 0.77 +0.5 640,678 - EX31_RS24360 0.77 +0.4 640,678 - EX31_RS24360 0.77 -1.3 640,678 - EX31_RS24360 0.77 +0.1 640,678 - EX31_RS24360 0.77 +0.3 640,678 - EX31_RS24360 0.77 -1.3 640,679 + EX31_RS24360 0.77 -1.2 640,680 - EX31_RS24360 0.77 +0.3 640,763 + EX31_RS24360 0.85 +0.0 640,763 + EX31_RS24360 0.85 +0.0 640,843 + -1.4 641,027 + -0.1 641,028 - -1.1 641,066 + -0.4 641,145 + -0.8 641,145 + -0.1 641,145 + -0.4 641,168 + -0.3 641,179 - -1.1 641,222 + +0.4 641,222 + -0.7 641,223 - +1.6 641,290 - EX31_RS24365 0.10 -0.4 641,393 + EX31_RS24365 0.26 -0.9 641,393 + EX31_RS24365 0.26 +0.7 641,394 - EX31_RS24365 0.26 -0.6 641,394 - EX31_RS24365 0.26 -0.1 641,394 - EX31_RS24365 0.26 -0.8 641,394 - EX31_RS24365 0.26 -0.3 641,396 - EX31_RS24365 0.26 -0.4 641,488 - EX31_RS24365 0.40 -0.4 641,491 + EX31_RS24365 0.40 +0.3 641,515 - EX31_RS24365 0.44 -0.1 641,527 - EX31_RS24365 0.46 -1.4 641,648 + EX31_RS24365 0.64 -1.4 641,648 + EX31_RS24365 0.64 -0.3 641,655 - EX31_RS24365 0.65 -0.6 641,657 - EX31_RS24365 0.65 +0.0 641,916 - -0.0 641,955 - +0.3 641,966 + +0.2 642,157 + -0.6 642,161 + -1.2 642,161 + -0.3 642,161 + -2.1 642,162 - +1.8 642,171 - -0.2 642,173 + -0.4 642,174 - -0.9 642,204 - EX31_RS24370 0.10 +0.0 642,280 - EX31_RS24370 0.17 +0.6 642,424 + EX31_RS24370 0.30 -0.9 642,424 + EX31_RS24370 0.30 -0.0 642,425 - EX31_RS24370 0.30 +1.2 642,429 - EX31_RS24370 0.30 -0.0 642,433 + EX31_RS24370 0.31 -1.9 642,434 - EX31_RS24370 0.31 -0.6 642,434 - EX31_RS24370 0.31 +0.0 642,493 + EX31_RS24370 0.36 +0.2 642,493 + EX31_RS24370 0.36 -0.7 642,494 - EX31_RS24370 0.36 -0.4 642,494 - EX31_RS24370 0.36 +0.7 642,494 - EX31_RS24370 0.36 +0.6 642,556 + EX31_RS24370 0.42 -2.5 642,557 - EX31_RS24370 0.42 +0.1 642,656 + EX31_RS24370 0.51 +0.0 642,683 - EX31_RS24370 0.53 -0.2 642,686 - EX31_RS24370 0.53 +1.2 642,708 - EX31_RS24370 0.55 +0.8 642,708 - EX31_RS24370 0.55 -2.0 642,744 + EX31_RS24370 0.59 -0.1 642,744 + EX31_RS24370 0.59 +0.7 642,745 - EX31_RS24370 0.59 -0.8 642,745 - EX31_RS24370 0.59 +0.0 642,793 - EX31_RS24370 0.63 -0.5 642,793 - EX31_RS24370 0.63 +1.6 642,794 + EX31_RS24370 0.63 +0.3 642,794 + EX31_RS24370 0.63 +1.0 642,794 + EX31_RS24370 0.63 +0.0 642,794 + EX31_RS24370 0.63 -1.7 642,794 + EX31_RS24370 0.63 +1.0 642,794 + EX31_RS24370 0.63 -1.0 642,795 - EX31_RS24370 0.63 +0.6 642,795 - EX31_RS24370 0.63 -0.3 642,866 + EX31_RS24370 0.70 +0.0 642,866 + EX31_RS24370 0.70 -1.2 642,867 - EX31_RS24370 0.70 +0.7 642,867 - EX31_RS24370 0.70 +0.5 642,880 - EX31_RS24370 0.71 -0.7
Or see this region's nucleotide sequence