Strain Fitness in Rahnella sp. WP5 around EX31_RS24365

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24360 and EX31_RS24365 are separated by 301 nucleotidesEX31_RS24365 and EX31_RS24370 are separated by 199 nucleotides EX31_RS24360: EX31_RS24360 - AI-2E family transporter, at 639,876 to 640,919 _RS24360 EX31_RS24365: EX31_RS24365 - response regulator transcription factor, at 641,221 to 641,889 _RS24365 EX31_RS24370: EX31_RS24370 - N-methyl-L-tryptophan oxidase, at 642,089 to 643,204 _RS24370 Position (kb) 641 642Strain fitness (log2 ratio) -2 -1 0 1 2at 640.254 kb on + strand, within EX31_RS24360at 640.254 kb on + strand, within EX31_RS24360at 640.255 kb on - strand, within EX31_RS24360at 640.255 kb on - strand, within EX31_RS24360at 640.280 kb on + strand, within EX31_RS24360at 640.294 kb on + strand, within EX31_RS24360at 640.302 kb on + strand, within EX31_RS24360at 640.302 kb on + strand, within EX31_RS24360at 640.303 kb on - strand, within EX31_RS24360at 640.303 kb on - strand, within EX31_RS24360at 640.428 kb on - strand, within EX31_RS24360at 640.462 kb on - strand, within EX31_RS24360at 640.578 kb on + strand, within EX31_RS24360at 640.677 kb on + strand, within EX31_RS24360at 640.677 kb on + strand, within EX31_RS24360at 640.677 kb on + strand, within EX31_RS24360at 640.678 kb on - strand, within EX31_RS24360at 640.678 kb on - strand, within EX31_RS24360at 640.678 kb on - strand, within EX31_RS24360at 640.678 kb on - strand, within EX31_RS24360at 640.678 kb on - strand, within EX31_RS24360at 640.678 kb on - strand, within EX31_RS24360at 640.678 kb on - strand, within EX31_RS24360at 640.679 kb on + strand, within EX31_RS24360at 640.680 kb on - strand, within EX31_RS24360at 640.763 kb on + strand, within EX31_RS24360at 640.763 kb on + strand, within EX31_RS24360at 640.843 kb on + strandat 641.027 kb on + strandat 641.028 kb on - strandat 641.066 kb on + strandat 641.145 kb on + strandat 641.145 kb on + strandat 641.145 kb on + strandat 641.168 kb on + strandat 641.179 kb on - strandat 641.222 kb on + strandat 641.222 kb on + strandat 641.223 kb on - strandat 641.290 kb on - strand, within EX31_RS24365at 641.393 kb on + strand, within EX31_RS24365at 641.393 kb on + strand, within EX31_RS24365at 641.394 kb on - strand, within EX31_RS24365at 641.394 kb on - strand, within EX31_RS24365at 641.394 kb on - strand, within EX31_RS24365at 641.394 kb on - strand, within EX31_RS24365at 641.396 kb on - strand, within EX31_RS24365at 641.488 kb on - strand, within EX31_RS24365at 641.491 kb on + strand, within EX31_RS24365at 641.515 kb on - strand, within EX31_RS24365at 641.527 kb on - strand, within EX31_RS24365at 641.648 kb on + strand, within EX31_RS24365at 641.648 kb on + strand, within EX31_RS24365at 641.655 kb on - strand, within EX31_RS24365at 641.657 kb on - strand, within EX31_RS24365at 641.916 kb on - strandat 641.955 kb on - strandat 641.966 kb on + strandat 642.157 kb on + strandat 642.161 kb on + strandat 642.161 kb on + strandat 642.161 kb on + strandat 642.162 kb on - strandat 642.171 kb on - strandat 642.173 kb on + strandat 642.174 kb on - strandat 642.204 kb on - strand, within EX31_RS24370at 642.280 kb on - strand, within EX31_RS24370at 642.424 kb on + strand, within EX31_RS24370at 642.424 kb on + strand, within EX31_RS24370at 642.425 kb on - strand, within EX31_RS24370at 642.429 kb on - strand, within EX31_RS24370at 642.433 kb on + strand, within EX31_RS24370at 642.434 kb on - strand, within EX31_RS24370at 642.434 kb on - strand, within EX31_RS24370at 642.493 kb on + strand, within EX31_RS24370at 642.493 kb on + strand, within EX31_RS24370at 642.494 kb on - strand, within EX31_RS24370at 642.494 kb on - strand, within EX31_RS24370at 642.494 kb on - strand, within EX31_RS24370at 642.556 kb on + strand, within EX31_RS24370at 642.557 kb on - strand, within EX31_RS24370at 642.656 kb on + strand, within EX31_RS24370at 642.683 kb on - strand, within EX31_RS24370at 642.686 kb on - strand, within EX31_RS24370at 642.708 kb on - strand, within EX31_RS24370at 642.708 kb on - strand, within EX31_RS24370at 642.744 kb on + strand, within EX31_RS24370at 642.744 kb on + strand, within EX31_RS24370at 642.745 kb on - strand, within EX31_RS24370at 642.745 kb on - strand, within EX31_RS24370at 642.793 kb on - strand, within EX31_RS24370at 642.793 kb on - strand, within EX31_RS24370at 642.794 kb on + strand, within EX31_RS24370at 642.794 kb on + strand, within EX31_RS24370at 642.794 kb on + strand, within EX31_RS24370at 642.794 kb on + strand, within EX31_RS24370at 642.794 kb on + strand, within EX31_RS24370at 642.794 kb on + strand, within EX31_RS24370at 642.795 kb on - strand, within EX31_RS24370at 642.795 kb on - strand, within EX31_RS24370at 642.866 kb on + strand, within EX31_RS24370at 642.866 kb on + strand, within EX31_RS24370at 642.867 kb on - strand, within EX31_RS24370at 642.867 kb on - strand, within EX31_RS24370at 642.880 kb on - strand, within EX31_RS24370

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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640,254 + EX31_RS24360 0.36 -0.2
640,254 + EX31_RS24360 0.36 +1.1
640,255 - EX31_RS24360 0.36 -2.4
640,255 - EX31_RS24360 0.36 -0.6
640,280 + EX31_RS24360 0.39 +0.5
640,294 + EX31_RS24360 0.40 -0.1
640,302 + EX31_RS24360 0.41 +0.4
640,302 + EX31_RS24360 0.41 +0.4
640,303 - EX31_RS24360 0.41 -1.0
640,303 - EX31_RS24360 0.41 +0.8
640,428 - EX31_RS24360 0.53 +0.1
640,462 - EX31_RS24360 0.56 -0.9
640,578 + EX31_RS24360 0.67 +0.2
640,677 + EX31_RS24360 0.77 +0.2
640,677 + EX31_RS24360 0.77 +0.4
640,677 + EX31_RS24360 0.77 +0.6
640,678 - EX31_RS24360 0.77 -0.1
640,678 - EX31_RS24360 0.77 +0.5
640,678 - EX31_RS24360 0.77 +0.4
640,678 - EX31_RS24360 0.77 -1.3
640,678 - EX31_RS24360 0.77 +0.1
640,678 - EX31_RS24360 0.77 +0.3
640,678 - EX31_RS24360 0.77 -1.3
640,679 + EX31_RS24360 0.77 -1.2
640,680 - EX31_RS24360 0.77 +0.3
640,763 + EX31_RS24360 0.85 +0.0
640,763 + EX31_RS24360 0.85 +0.0
640,843 + -1.4
641,027 + -0.1
641,028 - -1.1
641,066 + -0.4
641,145 + -0.8
641,145 + -0.1
641,145 + -0.4
641,168 + -0.3
641,179 - -1.1
641,222 + +0.4
641,222 + -0.7
641,223 - +1.6
641,290 - EX31_RS24365 0.10 -0.4
641,393 + EX31_RS24365 0.26 -0.9
641,393 + EX31_RS24365 0.26 +0.7
641,394 - EX31_RS24365 0.26 -0.6
641,394 - EX31_RS24365 0.26 -0.1
641,394 - EX31_RS24365 0.26 -0.8
641,394 - EX31_RS24365 0.26 -0.3
641,396 - EX31_RS24365 0.26 -0.4
641,488 - EX31_RS24365 0.40 -0.4
641,491 + EX31_RS24365 0.40 +0.3
641,515 - EX31_RS24365 0.44 -0.1
641,527 - EX31_RS24365 0.46 -1.4
641,648 + EX31_RS24365 0.64 -1.4
641,648 + EX31_RS24365 0.64 -0.3
641,655 - EX31_RS24365 0.65 -0.6
641,657 - EX31_RS24365 0.65 +0.0
641,916 - -0.0
641,955 - +0.3
641,966 + +0.2
642,157 + -0.6
642,161 + -1.2
642,161 + -0.3
642,161 + -2.1
642,162 - +1.8
642,171 - -0.2
642,173 + -0.4
642,174 - -0.9
642,204 - EX31_RS24370 0.10 +0.0
642,280 - EX31_RS24370 0.17 +0.6
642,424 + EX31_RS24370 0.30 -0.9
642,424 + EX31_RS24370 0.30 -0.0
642,425 - EX31_RS24370 0.30 +1.2
642,429 - EX31_RS24370 0.30 -0.0
642,433 + EX31_RS24370 0.31 -1.9
642,434 - EX31_RS24370 0.31 -0.6
642,434 - EX31_RS24370 0.31 +0.0
642,493 + EX31_RS24370 0.36 +0.2
642,493 + EX31_RS24370 0.36 -0.7
642,494 - EX31_RS24370 0.36 -0.4
642,494 - EX31_RS24370 0.36 +0.7
642,494 - EX31_RS24370 0.36 +0.6
642,556 + EX31_RS24370 0.42 -2.5
642,557 - EX31_RS24370 0.42 +0.1
642,656 + EX31_RS24370 0.51 +0.0
642,683 - EX31_RS24370 0.53 -0.2
642,686 - EX31_RS24370 0.53 +1.2
642,708 - EX31_RS24370 0.55 +0.8
642,708 - EX31_RS24370 0.55 -2.0
642,744 + EX31_RS24370 0.59 -0.1
642,744 + EX31_RS24370 0.59 +0.7
642,745 - EX31_RS24370 0.59 -0.8
642,745 - EX31_RS24370 0.59 +0.0
642,793 - EX31_RS24370 0.63 -0.5
642,793 - EX31_RS24370 0.63 +1.6
642,794 + EX31_RS24370 0.63 +0.3
642,794 + EX31_RS24370 0.63 +1.0
642,794 + EX31_RS24370 0.63 +0.0
642,794 + EX31_RS24370 0.63 -1.7
642,794 + EX31_RS24370 0.63 +1.0
642,794 + EX31_RS24370 0.63 -1.0
642,795 - EX31_RS24370 0.63 +0.6
642,795 - EX31_RS24370 0.63 -0.3
642,866 + EX31_RS24370 0.70 +0.0
642,866 + EX31_RS24370 0.70 -1.2
642,867 - EX31_RS24370 0.70 +0.7
642,867 - EX31_RS24370 0.70 +0.5
642,880 - EX31_RS24370 0.71 -0.7

Or see this region's nucleotide sequence