Strain Fitness in Rahnella sp. WP5 around EX31_RS24325

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24315 and EX31_RS24320 are separated by 265 nucleotidesEX31_RS24320 and EX31_RS24325 are separated by 211 nucleotidesEX31_RS24325 and EX31_RS24330 are separated by 376 nucleotides EX31_RS24315: EX31_RS24315 - multidrug efflux MFS transporter MdtG, at 627,947 to 629,185 _RS24315 EX31_RS24320: EX31_RS24320 - DoxX family protein, at 629,451 to 629,885 _RS24320 EX31_RS24325: EX31_RS24325 - LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee, at 630,097 to 631,032 _RS24325 EX31_RS24330: EX31_RS24330 - NADH:flavin oxidoreductase/NADH oxidase, at 631,409 to 632,506 _RS24330 Position (kb) 630 631 632Strain fitness (log2 ratio) -2 -1 0 1 2 3at 629.131 kb on + strandat 629.131 kb on + strandat 629.131 kb on + strandat 629.247 kb on + strandat 629.247 kb on + strandat 629.247 kb on + strandat 629.248 kb on - strandat 629.251 kb on + strandat 629.251 kb on + strandat 629.252 kb on - strandat 629.252 kb on - strandat 629.282 kb on + strandat 629.286 kb on + strandat 629.287 kb on - strandat 629.317 kb on + strandat 629.433 kb on + strandat 629.437 kb on - strandat 629.437 kb on - strandat 629.440 kb on - strandat 629.440 kb on - strandat 629.452 kb on + strandat 629.453 kb on - strandat 629.483 kb on - strandat 629.483 kb on - strandat 629.528 kb on - strand, within EX31_RS24320at 629.568 kb on - strand, within EX31_RS24320at 629.695 kb on + strand, within EX31_RS24320at 629.696 kb on - strand, within EX31_RS24320at 629.705 kb on - strand, within EX31_RS24320at 629.796 kb on + strand, within EX31_RS24320at 629.829 kb on - strand, within EX31_RS24320at 629.885 kb on + strandat 629.885 kb on + strandat 629.886 kb on - strandat 629.886 kb on - strandat 629.886 kb on - strandat 629.954 kb on + strandat 629.982 kb on + strandat 629.982 kb on + strandat 629.983 kb on - strandat 630.014 kb on + strandat 630.015 kb on - strandat 630.015 kb on - strandat 630.015 kb on - strandat 630.115 kb on - strandat 630.169 kb on - strandat 630.169 kb on - strandat 630.169 kb on - strandat 630.169 kb on - strandat 630.169 kb on - strandat 630.170 kb on + strandat 630.170 kb on + strandat 630.171 kb on - strandat 630.171 kb on - strandat 630.219 kb on - strand, within EX31_RS24325at 630.219 kb on - strand, within EX31_RS24325at 630.273 kb on + strand, within EX31_RS24325at 630.274 kb on - strand, within EX31_RS24325at 630.274 kb on - strand, within EX31_RS24325at 630.357 kb on - strand, within EX31_RS24325at 630.357 kb on - strand, within EX31_RS24325at 630.357 kb on - strand, within EX31_RS24325at 630.400 kb on + strand, within EX31_RS24325at 630.426 kb on - strand, within EX31_RS24325at 630.601 kb on - strand, within EX31_RS24325at 630.641 kb on - strand, within EX31_RS24325at 630.801 kb on + strand, within EX31_RS24325at 630.802 kb on - strand, within EX31_RS24325at 630.802 kb on - strand, within EX31_RS24325at 630.940 kb on + strandat 630.941 kb on - strandat 631.011 kb on + strandat 631.033 kb on - strandat 631.069 kb on - strandat 631.069 kb on - strandat 631.070 kb on + strandat 631.070 kb on + strandat 631.071 kb on - strandat 631.071 kb on - strandat 631.071 kb on - strandat 631.071 kb on - strandat 631.082 kb on - strandat 631.115 kb on + strandat 631.115 kb on + strandat 631.116 kb on - strandat 631.116 kb on - strandat 631.116 kb on - strandat 631.116 kb on - strandat 631.116 kb on - strandat 631.116 kb on - strandat 631.116 kb on - strandat 631.128 kb on + strandat 631.128 kb on + strandat 631.128 kb on + strandat 631.128 kb on + strandat 631.129 kb on - strandat 631.129 kb on - strandat 631.129 kb on - strandat 631.129 kb on - strandat 631.129 kb on - strandat 631.164 kb on + strandat 631.164 kb on + strandat 631.164 kb on + strandat 631.164 kb on + strandat 631.164 kb on + strandat 631.165 kb on - strandat 631.165 kb on - strandat 631.165 kb on - strandat 631.165 kb on - strandat 631.165 kb on - strandat 631.165 kb on - strandat 631.165 kb on - strandat 631.165 kb on - strandat 631.206 kb on + strandat 631.207 kb on - strandat 631.207 kb on - strandat 631.207 kb on - strandat 631.209 kb on + strandat 631.210 kb on - strandat 631.210 kb on - strandat 631.218 kb on + strandat 631.218 kb on + strandat 631.219 kb on - strandat 631.222 kb on + strandat 631.224 kb on + strandat 631.224 kb on + strandat 631.224 kb on + strandat 631.225 kb on - strandat 631.273 kb on + strandat 631.274 kb on - strandat 631.274 kb on - strandat 631.274 kb on - strandat 631.274 kb on - strandat 631.274 kb on - strandat 631.297 kb on - strandat 631.398 kb on - strandat 631.411 kb on - strandat 631.635 kb on + strand, within EX31_RS24330at 631.635 kb on + strand, within EX31_RS24330at 631.635 kb on + strand, within EX31_RS24330at 631.635 kb on + strand, within EX31_RS24330at 631.635 kb on + strand, within EX31_RS24330at 631.636 kb on - strand, within EX31_RS24330at 631.636 kb on - strand, within EX31_RS24330at 631.636 kb on - strand, within EX31_RS24330at 631.668 kb on + strand, within EX31_RS24330at 631.668 kb on + strand, within EX31_RS24330at 631.668 kb on + strand, within EX31_RS24330at 631.668 kb on + strand, within EX31_RS24330at 631.668 kb on + strand, within EX31_RS24330at 631.669 kb on - strand, within EX31_RS24330at 631.669 kb on - strand, within EX31_RS24330at 631.728 kb on + strand, within EX31_RS24330at 631.728 kb on + strand, within EX31_RS24330at 631.729 kb on - strand, within EX31_RS24330at 631.817 kb on - strand, within EX31_RS24330at 631.889 kb on - strand, within EX31_RS24330at 631.889 kb on - strand, within EX31_RS24330at 631.912 kb on - strand, within EX31_RS24330at 632.023 kb on + strand, within EX31_RS24330at 632.031 kb on + strand, within EX31_RS24330at 632.032 kb on - strand, within EX31_RS24330

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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629,131 + +1.5
629,131 + +0.6
629,131 + -0.2
629,247 + +0.1
629,247 + -0.2
629,247 + +0.0
629,248 - -1.8
629,251 + -1.2
629,251 + -0.5
629,252 - -0.4
629,252 - -0.3
629,282 + -0.4
629,286 + -0.2
629,287 - -1.5
629,317 + +0.0
629,433 + -0.2
629,437 - +0.5
629,437 - +0.3
629,440 - -0.9
629,440 - -0.3
629,452 + -1.4
629,453 - +0.4
629,483 - +0.3
629,483 - -0.8
629,528 - EX31_RS24320 0.18 -0.4
629,568 - EX31_RS24320 0.27 -0.1
629,695 + EX31_RS24320 0.56 -1.4
629,696 - EX31_RS24320 0.56 +1.2
629,705 - EX31_RS24320 0.58 -0.2
629,796 + EX31_RS24320 0.79 -0.7
629,829 - EX31_RS24320 0.87 -0.4
629,885 + +0.5
629,885 + -0.0
629,886 - +0.5
629,886 - +0.0
629,886 - -1.0
629,954 + -0.4
629,982 + +1.1
629,982 + -0.0
629,983 - -0.9
630,014 + +0.3
630,015 - -1.0
630,015 - -0.4
630,015 - +0.2
630,115 - -0.3
630,169 - -0.2
630,169 - +1.0
630,169 - +2.5
630,169 - -0.8
630,169 - -0.5
630,170 + +0.0
630,170 + -0.3
630,171 - +0.4
630,171 - +1.4
630,219 - EX31_RS24325 0.13 -1.6
630,219 - EX31_RS24325 0.13 +0.5
630,273 + EX31_RS24325 0.19 +0.0
630,274 - EX31_RS24325 0.19 -0.6
630,274 - EX31_RS24325 0.19 -0.1
630,357 - EX31_RS24325 0.28 +0.3
630,357 - EX31_RS24325 0.28 +1.4
630,357 - EX31_RS24325 0.28 -0.4
630,400 + EX31_RS24325 0.32 -0.6
630,426 - EX31_RS24325 0.35 -1.1
630,601 - EX31_RS24325 0.54 +3.4
630,641 - EX31_RS24325 0.58 -0.8
630,801 + EX31_RS24325 0.75 +0.3
630,802 - EX31_RS24325 0.75 +0.0
630,802 - EX31_RS24325 0.75 -1.2
630,940 + +1.4
630,941 - +3.4
631,011 + -0.4
631,033 - +0.0
631,069 - -0.6
631,069 - -0.3
631,070 + +0.0
631,070 + -2.1
631,071 - +0.5
631,071 - -0.5
631,071 - +0.5
631,071 - -0.8
631,082 - -0.7
631,115 + -1.0
631,115 + +1.4
631,116 - +0.7
631,116 - -0.2
631,116 - +0.5
631,116 - -0.4
631,116 - -0.0
631,116 - -0.1
631,116 - +0.5
631,128 + -0.0
631,128 + +0.2
631,128 + +0.1
631,128 + -0.8
631,129 - -1.0
631,129 - +0.9
631,129 - +0.0
631,129 - -0.0
631,129 - -0.2
631,164 + +2.0
631,164 + +1.8
631,164 + +0.1
631,164 + -2.2
631,164 + -1.2
631,165 - -2.4
631,165 - -0.6
631,165 - +0.0
631,165 - -0.6
631,165 - +0.1
631,165 - -1.3
631,165 - +1.0
631,165 - +0.3
631,206 + -0.1
631,207 - -1.0
631,207 - -2.1
631,207 - +1.3
631,209 + -0.1
631,210 - -1.8
631,210 - -0.5
631,218 + -1.6
631,218 + +0.0
631,219 - +1.4
631,222 + +1.7
631,224 + +0.4
631,224 + -0.6
631,224 + +0.2
631,225 - +0.1
631,273 + +0.1
631,274 - +0.9
631,274 - -1.0
631,274 - -0.0
631,274 - -0.2
631,274 - -0.7
631,297 - +0.1
631,398 - -0.4
631,411 - +0.7
631,635 + EX31_RS24330 0.21 -0.3
631,635 + EX31_RS24330 0.21 +0.5
631,635 + EX31_RS24330 0.21 -1.9
631,635 + EX31_RS24330 0.21 +0.2
631,635 + EX31_RS24330 0.21 -0.3
631,636 - EX31_RS24330 0.21 +0.2
631,636 - EX31_RS24330 0.21 +0.5
631,636 - EX31_RS24330 0.21 -1.0
631,668 + EX31_RS24330 0.24 +0.9
631,668 + EX31_RS24330 0.24 +0.2
631,668 + EX31_RS24330 0.24 +0.1
631,668 + EX31_RS24330 0.24 -0.4
631,668 + EX31_RS24330 0.24 +0.4
631,669 - EX31_RS24330 0.24 -0.3
631,669 - EX31_RS24330 0.24 +0.4
631,728 + EX31_RS24330 0.29 -0.6
631,728 + EX31_RS24330 0.29 -1.0
631,729 - EX31_RS24330 0.29 -0.4
631,817 - EX31_RS24330 0.37 +0.7
631,889 - EX31_RS24330 0.44 +0.6
631,889 - EX31_RS24330 0.44 +0.3
631,912 - EX31_RS24330 0.46 +0.0
632,023 + EX31_RS24330 0.56 +0.8
632,031 + EX31_RS24330 0.57 +0.6
632,032 - EX31_RS24330 0.57 -0.1

Or see this region's nucleotide sequence