Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23280 and EX31_RS23285 are separated by 7 nucleotides EX31_RS23285 and EX31_RS23290 are separated by 128 nucleotides EX31_RS23290 and EX31_RS23295 are separated by 312 nucleotides
EX31_RS23280: EX31_RS23280 - outer membrane porin, OprD family, at 417,016 to 418,437
_RS23280
EX31_RS23285: EX31_RS23285 - hypothetical protein, at 418,445 to 418,786
_RS23285
EX31_RS23290: EX31_RS23290 - ferric iron uptake transcriptional regulator, at 418,915 to 419,370
_RS23290
EX31_RS23295: EX31_RS23295 - flavodoxin FldA, at 419,683 to 420,210
_RS23295
Position (kb) 418
419 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 417.445 kb on + strand, within EX31_RS23280 at 417.445 kb on + strand, within EX31_RS23280 at 417.446 kb on - strand, within EX31_RS23280 at 417.446 kb on - strand, within EX31_RS23280 at 417.446 kb on - strand, within EX31_RS23280 at 417.447 kb on + strand, within EX31_RS23280 at 417.448 kb on - strand, within EX31_RS23280 at 417.469 kb on + strand, within EX31_RS23280 at 417.469 kb on + strand, within EX31_RS23280 at 417.469 kb on + strand, within EX31_RS23280 at 417.496 kb on + strand, within EX31_RS23280 at 417.498 kb on + strand, within EX31_RS23280 at 417.498 kb on + strand, within EX31_RS23280 at 417.498 kb on + strand, within EX31_RS23280 at 417.499 kb on - strand, within EX31_RS23280 at 417.499 kb on - strand, within EX31_RS23280 at 417.556 kb on + strand, within EX31_RS23280 at 417.556 kb on + strand, within EX31_RS23280 at 417.556 kb on + strand, within EX31_RS23280 at 417.557 kb on - strand, within EX31_RS23280 at 417.557 kb on - strand, within EX31_RS23280 at 417.578 kb on - strand, within EX31_RS23280 at 417.579 kb on + strand, within EX31_RS23280 at 417.579 kb on + strand, within EX31_RS23280 at 417.579 kb on + strand, within EX31_RS23280 at 417.620 kb on - strand, within EX31_RS23280 at 417.621 kb on + strand, within EX31_RS23280 at 417.621 kb on + strand, within EX31_RS23280 at 417.621 kb on + strand, within EX31_RS23280 at 417.621 kb on + strand, within EX31_RS23280 at 417.621 kb on + strand, within EX31_RS23280 at 417.621 kb on + strand, within EX31_RS23280 at 417.622 kb on - strand, within EX31_RS23280 at 417.622 kb on - strand, within EX31_RS23280 at 417.622 kb on - strand, within EX31_RS23280 at 417.622 kb on - strand, within EX31_RS23280 at 417.622 kb on - strand, within EX31_RS23280 at 417.637 kb on + strand, within EX31_RS23280 at 417.637 kb on + strand, within EX31_RS23280 at 417.639 kb on + strand, within EX31_RS23280 at 417.640 kb on - strand, within EX31_RS23280 at 417.640 kb on - strand, within EX31_RS23280 at 417.640 kb on - strand, within EX31_RS23280 at 417.705 kb on + strand, within EX31_RS23280 at 417.705 kb on + strand, within EX31_RS23280 at 417.728 kb on - strand, within EX31_RS23280 at 417.782 kb on - strand, within EX31_RS23280 at 417.782 kb on - strand, within EX31_RS23280 at 417.801 kb on + strand, within EX31_RS23280 at 417.802 kb on - strand, within EX31_RS23280 at 417.850 kb on + strand, within EX31_RS23280 at 417.850 kb on + strand, within EX31_RS23280 at 417.851 kb on - strand, within EX31_RS23280 at 417.859 kb on + strand, within EX31_RS23280 at 417.963 kb on + strand, within EX31_RS23280 at 418.026 kb on + strand, within EX31_RS23280 at 418.026 kb on + strand, within EX31_RS23280 at 418.027 kb on - strand, within EX31_RS23280 at 418.039 kb on + strand, within EX31_RS23280 at 418.118 kb on - strand, within EX31_RS23280 at 418.132 kb on + strand, within EX31_RS23280 at 418.180 kb on + strand, within EX31_RS23280 at 418.180 kb on + strand, within EX31_RS23280 at 418.186 kb on + strand, within EX31_RS23280 at 418.186 kb on + strand, within EX31_RS23280 at 418.187 kb on - strand, within EX31_RS23280 at 418.222 kb on + strand, within EX31_RS23280 at 418.321 kb on + strand at 418.321 kb on + strand at 418.353 kb on + strand at 418.379 kb on + strand at 418.379 kb on + strand at 418.379 kb on + strand at 418.379 kb on + strand at 418.380 kb on - strand at 418.444 kb on + strand at 418.445 kb on - strand at 418.559 kb on - strand, within EX31_RS23285 at 418.564 kb on + strand, within EX31_RS23285 at 418.564 kb on + strand, within EX31_RS23285 at 418.608 kb on + strand, within EX31_RS23285 at 418.702 kb on + strand, within EX31_RS23285 at 418.702 kb on + strand, within EX31_RS23285 at 418.724 kb on + strand, within EX31_RS23285 at 418.724 kb on + strand, within EX31_RS23285 at 418.724 kb on + strand, within EX31_RS23285 at 418.724 kb on + strand, within EX31_RS23285 at 418.725 kb on - strand, within EX31_RS23285 at 418.725 kb on - strand, within EX31_RS23285 at 418.725 kb on - strand, within EX31_RS23285 at 418.725 kb on - strand, within EX31_RS23285 at 418.725 kb on - strand, within EX31_RS23285 at 418.725 kb on - strand, within EX31_RS23285 at 418.747 kb on - strand, within EX31_RS23285 at 418.777 kb on + strand at 418.778 kb on - strand at 418.778 kb on - strand at 418.847 kb on - strand at 418.847 kb on - strand at 418.916 kb on + strand at 418.930 kb on - strand at 419.053 kb on - strand, within EX31_RS23290 at 419.388 kb on - strand at 419.388 kb on - strand at 419.388 kb on - strand at 419.390 kb on + strand at 419.391 kb on - strand at 419.391 kb on - strand at 419.391 kb on - strand at 419.391 kb on - strand at 419.391 kb on - strand at 419.451 kb on - strand at 419.615 kb on - strand at 419.635 kb on - strand at 419.659 kb on - strand at 419.707 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 417,445 + EX31_RS23280 0.30 -0.2 417,445 + EX31_RS23280 0.30 -0.2 417,446 - EX31_RS23280 0.30 -0.1 417,446 - EX31_RS23280 0.30 +0.7 417,446 - EX31_RS23280 0.30 +0.4 417,447 + EX31_RS23280 0.30 +0.0 417,448 - EX31_RS23280 0.30 +0.9 417,469 + EX31_RS23280 0.32 -0.7 417,469 + EX31_RS23280 0.32 +0.6 417,469 + EX31_RS23280 0.32 -1.2 417,496 + EX31_RS23280 0.34 -0.8 417,498 + EX31_RS23280 0.34 +0.2 417,498 + EX31_RS23280 0.34 +0.4 417,498 + EX31_RS23280 0.34 -0.3 417,499 - EX31_RS23280 0.34 -0.4 417,499 - EX31_RS23280 0.34 -2.9 417,556 + EX31_RS23280 0.38 -1.3 417,556 + EX31_RS23280 0.38 -0.5 417,556 + EX31_RS23280 0.38 +0.7 417,557 - EX31_RS23280 0.38 -0.2 417,557 - EX31_RS23280 0.38 -0.2 417,578 - EX31_RS23280 0.40 -0.4 417,579 + EX31_RS23280 0.40 +0.5 417,579 + EX31_RS23280 0.40 -0.1 417,579 + EX31_RS23280 0.40 +0.0 417,620 - EX31_RS23280 0.42 +0.7 417,621 + EX31_RS23280 0.43 -0.1 417,621 + EX31_RS23280 0.43 -0.4 417,621 + EX31_RS23280 0.43 +0.5 417,621 + EX31_RS23280 0.43 +0.0 417,621 + EX31_RS23280 0.43 -1.3 417,621 + EX31_RS23280 0.43 -0.7 417,622 - EX31_RS23280 0.43 +0.1 417,622 - EX31_RS23280 0.43 -0.3 417,622 - EX31_RS23280 0.43 -0.0 417,622 - EX31_RS23280 0.43 +0.2 417,622 - EX31_RS23280 0.43 -0.1 417,637 + EX31_RS23280 0.44 -0.5 417,637 + EX31_RS23280 0.44 -0.9 417,639 + EX31_RS23280 0.44 -0.2 417,640 - EX31_RS23280 0.44 +0.3 417,640 - EX31_RS23280 0.44 +0.1 417,640 - EX31_RS23280 0.44 -0.3 417,705 + EX31_RS23280 0.48 +0.2 417,705 + EX31_RS23280 0.48 +0.3 417,728 - EX31_RS23280 0.50 +0.2 417,782 - EX31_RS23280 0.54 +0.0 417,782 - EX31_RS23280 0.54 +0.5 417,801 + EX31_RS23280 0.55 -0.9 417,802 - EX31_RS23280 0.55 -0.5 417,850 + EX31_RS23280 0.59 -0.1 417,850 + EX31_RS23280 0.59 -0.2 417,851 - EX31_RS23280 0.59 -2.1 417,859 + EX31_RS23280 0.59 +1.4 417,963 + EX31_RS23280 0.67 +0.1 418,026 + EX31_RS23280 0.71 +0.1 418,026 + EX31_RS23280 0.71 -0.2 418,027 - EX31_RS23280 0.71 +2.1 418,039 + EX31_RS23280 0.72 -0.8 418,118 - EX31_RS23280 0.77 -1.2 418,132 + EX31_RS23280 0.78 -0.2 418,180 + EX31_RS23280 0.82 -0.2 418,180 + EX31_RS23280 0.82 -0.4 418,186 + EX31_RS23280 0.82 +0.0 418,186 + EX31_RS23280 0.82 -0.3 418,187 - EX31_RS23280 0.82 +0.7 418,222 + EX31_RS23280 0.85 -0.3 418,321 + +0.5 418,321 + -0.7 418,353 + -0.2 418,379 + -0.6 418,379 + +1.1 418,379 + -0.1 418,379 + +2.8 418,380 - -0.5 418,444 + +0.8 418,445 - +0.2 418,559 - EX31_RS23285 0.33 +0.3 418,564 + EX31_RS23285 0.35 -0.7 418,564 + EX31_RS23285 0.35 -0.3 418,608 + EX31_RS23285 0.48 +0.1 418,702 + EX31_RS23285 0.75 -0.1 418,702 + EX31_RS23285 0.75 -0.7 418,724 + EX31_RS23285 0.82 -0.9 418,724 + EX31_RS23285 0.82 -0.1 418,724 + EX31_RS23285 0.82 +0.0 418,724 + EX31_RS23285 0.82 +0.2 418,725 - EX31_RS23285 0.82 +0.0 418,725 - EX31_RS23285 0.82 -0.1 418,725 - EX31_RS23285 0.82 -1.0 418,725 - EX31_RS23285 0.82 -1.4 418,725 - EX31_RS23285 0.82 -1.3 418,725 - EX31_RS23285 0.82 -3.2 418,747 - EX31_RS23285 0.88 -0.9 418,777 + +1.1 418,778 - -0.1 418,778 - -0.1 418,847 - -0.4 418,847 - +0.1 418,916 + -0.6 418,930 - +0.6 419,053 - EX31_RS23290 0.30 +0.2 419,388 - +0.5 419,388 - +0.2 419,388 - -0.3 419,390 + -0.8 419,391 - +0.8 419,391 - +1.1 419,391 - +1.0 419,391 - -0.5 419,391 - +0.4 419,451 - -0.6 419,615 - -0.1 419,635 - +1.8 419,659 - +0.5 419,707 - +1.4
Or see this region's nucleotide sequence