Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23120 and EX31_RS23125 are separated by 38 nucleotides EX31_RS23125 and EX31_RS23130 are separated by 3 nucleotides EX31_RS23130 and EX31_RS23135 are separated by 206 nucleotides EX31_RS23135 and EX31_RS23140 are separated by 14 nucleotides
EX31_RS23120: EX31_RS23120 - peptidoglycan DD-transpeptidase MrdA, at 385,602 to 387,506
_RS23120
EX31_RS23125: EX31_RS23125 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 387,545 to 388,015
_RS23125
EX31_RS23130: EX31_RS23130 - ribosome silencing factor, at 388,019 to 388,336
_RS23130
EX31_RS23135: EX31_RS23135 - nicotinate-nucleotide adenylyltransferase, at 388,543 to 389,220
_RS23135
EX31_RS23140: EX31_RS23140 - DNA polymerase III subunit delta, at 389,235 to 390,275
_RS23140
Position (kb) 388
389 Strain fitness (log2 ratio) -2
-1
0
1
2 at 387.517 kb on - strand at 387.517 kb on - strand at 387.517 kb on - strand at 387.517 kb on - strand at 387.517 kb on - strand at 387.575 kb on - strand at 387.578 kb on - strand at 387.578 kb on - strand at 387.926 kb on - strand, within EX31_RS23125 at 387.926 kb on - strand, within EX31_RS23125 at 387.949 kb on - strand, within EX31_RS23125 at 388.045 kb on - strand at 388.045 kb on - strand at 388.223 kb on - strand, within EX31_RS23130 at 388.238 kb on - strand, within EX31_RS23130 at 388.241 kb on - strand, within EX31_RS23130 at 388.250 kb on - strand, within EX31_RS23130 at 388.328 kb on - strand at 388.425 kb on - strand at 388.473 kb on - strand at 388.529 kb on - strand at 388.531 kb on - strand at 388.531 kb on - strand at 388.531 kb on - strand at 388.531 kb on - strand at 388.531 kb on - strand at 388.531 kb on - strand at 388.531 kb on - strand at 388.571 kb on - strand at 388.571 kb on - strand at 388.571 kb on - strand at 388.571 kb on - strand at 388.571 kb on - strand at 389.287 kb on - strand at 389.287 kb on - strand at 389.287 kb on - strand at 389.287 kb on - strand at 389.287 kb on - strand at 389.291 kb on + strand at 389.292 kb on - strand at 389.292 kb on - strand at 389.292 kb on - strand at 389.292 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 387,517 - +0.2 387,517 - +0.8 387,517 - -1.4 387,517 - -0.9 387,517 - +0.1 387,575 - +0.6 387,578 - +0.2 387,578 - -1.1 387,926 - EX31_RS23125 0.81 +0.6 387,926 - EX31_RS23125 0.81 -2.1 387,949 - EX31_RS23125 0.86 -0.5 388,045 - +1.1 388,045 - -0.3 388,223 - EX31_RS23130 0.64 -0.1 388,238 - EX31_RS23130 0.69 -1.1 388,241 - EX31_RS23130 0.70 -0.5 388,250 - EX31_RS23130 0.73 -0.2 388,328 - -0.4 388,425 - -1.2 388,473 - -1.6 388,529 - +0.8 388,531 - -0.3 388,531 - -2.4 388,531 - +0.2 388,531 - -2.3 388,531 - -0.2 388,531 - -0.2 388,531 - +0.4 388,571 - +0.2 388,571 - -0.2 388,571 - -0.4 388,571 - -1.6 388,571 - +0.2 389,287 - +0.3 389,287 - -0.1 389,287 - -2.0 389,287 - +0.2 389,287 - +0.2 389,291 + +0.2 389,292 - +2.0 389,292 - -0.6 389,292 - -0.2 389,292 - -0.4
Or see this region's nucleotide sequence