Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS21715 and EX31_RS25615 are separated by 275 nucleotides EX31_RS25615 and EX31_RS21720 are separated by 417 nucleotides EX31_RS21720 and EX31_RS21725 overlap by 4 nucleotides EX31_RS21725 and EX31_RS21730 are separated by 352 nucleotides
EX31_RS21715: EX31_RS21715 - glycoside hydrolase, at 86,342 to 89,224
_RS21715
EX31_RS25615: EX31_RS25615 - AlpA family phage regulatory protein, at 89,500 to 89,638
_RS25615
EX31_RS21720: EX31_RS21720 - DUF2892 domain-containing protein, at 90,056 to 90,586
_RS21720
EX31_RS21725: EX31_RS21725 - helix-turn-helix transcriptional regulator, at 90,583 to 90,900
_RS21725
EX31_RS21730: EX31_RS21730 - hypothetical protein, at 91,253 to 91,600
_RS21730
Position (kb) 90
91 Strain fitness (log2 ratio) -2
-1
0
1
2 at 89.061 kb on + strand at 89.061 kb on + strand at 89.061 kb on + strand at 89.062 kb on - strand at 89.062 kb on - strand at 89.062 kb on - strand at 89.062 kb on - strand at 89.128 kb on + strand at 89.212 kb on + strand at 89.562 kb on + strand, within EX31_RS25615 at 89.627 kb on - strand at 89.627 kb on - strand at 89.643 kb on + strand at 89.787 kb on - strand at 89.815 kb on + strand at 89.815 kb on + strand at 89.817 kb on + strand at 89.817 kb on + strand at 89.817 kb on + strand at 90.033 kb on - strand at 90.044 kb on + strand at 90.045 kb on - strand at 90.045 kb on - strand at 90.058 kb on - strand at 90.065 kb on - strand at 90.065 kb on - strand at 90.120 kb on - strand, within EX31_RS21720 at 90.120 kb on - strand, within EX31_RS21720 at 90.120 kb on - strand, within EX31_RS21720 at 90.120 kb on - strand, within EX31_RS21720 at 90.120 kb on - strand, within EX31_RS21720 at 90.161 kb on + strand, within EX31_RS21720 at 90.162 kb on - strand, within EX31_RS21720 at 90.179 kb on + strand, within EX31_RS21720 at 90.186 kb on + strand, within EX31_RS21720 at 90.187 kb on - strand, within EX31_RS21720 at 90.212 kb on - strand, within EX31_RS21720 at 90.212 kb on - strand, within EX31_RS21720 at 90.215 kb on + strand, within EX31_RS21720 at 90.216 kb on - strand, within EX31_RS21720 at 90.216 kb on - strand, within EX31_RS21720 at 90.216 kb on - strand, within EX31_RS21720 at 90.258 kb on + strand, within EX31_RS21720 at 90.258 kb on + strand, within EX31_RS21720 at 90.258 kb on + strand, within EX31_RS21720 at 90.259 kb on - strand, within EX31_RS21720 at 90.304 kb on + strand, within EX31_RS21720 at 90.323 kb on + strand, within EX31_RS21720 at 90.323 kb on + strand, within EX31_RS21720 at 90.323 kb on + strand, within EX31_RS21720 at 90.417 kb on - strand, within EX31_RS21720 at 90.452 kb on - strand, within EX31_RS21720 at 90.472 kb on + strand, within EX31_RS21720 at 90.473 kb on - strand, within EX31_RS21720 at 90.570 kb on - strand at 90.570 kb on - strand at 90.570 kb on - strand at 90.570 kb on - strand at 90.570 kb on - strand at 90.605 kb on + strand at 90.606 kb on - strand at 90.606 kb on - strand at 90.660 kb on - strand, within EX31_RS21725 at 90.680 kb on - strand, within EX31_RS21725 at 90.680 kb on - strand, within EX31_RS21725 at 90.680 kb on - strand, within EX31_RS21725 at 90.680 kb on - strand, within EX31_RS21725 at 90.680 kb on - strand, within EX31_RS21725 at 90.680 kb on - strand, within EX31_RS21725 at 90.680 kb on - strand, within EX31_RS21725 at 90.680 kb on - strand, within EX31_RS21725 at 90.680 kb on - strand, within EX31_RS21725 at 90.680 kb on - strand, within EX31_RS21725 at 90.746 kb on - strand, within EX31_RS21725 at 90.746 kb on - strand, within EX31_RS21725 at 90.764 kb on - strand, within EX31_RS21725 at 90.764 kb on - strand, within EX31_RS21725 at 90.764 kb on - strand, within EX31_RS21725 at 90.764 kb on - strand, within EX31_RS21725 at 90.764 kb on - strand, within EX31_RS21725 at 90.769 kb on - strand, within EX31_RS21725 at 90.769 kb on - strand, within EX31_RS21725 at 90.769 kb on - strand, within EX31_RS21725 at 90.769 kb on - strand, within EX31_RS21725 at 90.802 kb on - strand, within EX31_RS21725 at 90.802 kb on - strand, within EX31_RS21725 at 90.802 kb on - strand, within EX31_RS21725 at 90.802 kb on - strand, within EX31_RS21725 at 90.815 kb on - strand, within EX31_RS21725 at 90.815 kb on - strand, within EX31_RS21725 at 90.868 kb on - strand, within EX31_RS21725 at 90.868 kb on - strand, within EX31_RS21725 at 90.868 kb on - strand, within EX31_RS21725 at 90.868 kb on - strand, within EX31_RS21725 at 90.868 kb on - strand, within EX31_RS21725 at 90.892 kb on - strand at 90.951 kb on + strand at 90.951 kb on + strand at 90.952 kb on - strand at 90.953 kb on + strand at 91.058 kb on + strand at 91.059 kb on - strand at 91.059 kb on - strand at 91.150 kb on + strand at 91.151 kb on - strand at 91.152 kb on + strand at 91.152 kb on + strand at 91.152 kb on + strand at 91.152 kb on + strand at 91.152 kb on + strand at 91.152 kb on + strand at 91.152 kb on + strand at 91.153 kb on - strand at 91.153 kb on - strand at 91.153 kb on - strand at 91.153 kb on - strand at 91.168 kb on + strand at 91.191 kb on + strand at 91.191 kb on + strand at 91.192 kb on - strand at 91.208 kb on - strand at 91.213 kb on + strand at 91.213 kb on + strand at 91.213 kb on + strand at 91.214 kb on - strand at 91.224 kb on + strand at 91.230 kb on + strand at 91.231 kb on - strand at 91.231 kb on - strand at 91.234 kb on + strand at 91.234 kb on + strand at 91.234 kb on + strand at 91.234 kb on + strand at 91.234 kb on + strand at 91.235 kb on - strand at 91.235 kb on - strand at 91.235 kb on - strand at 91.257 kb on + strand at 91.257 kb on + strand at 91.257 kb on + strand at 91.258 kb on - strand at 91.258 kb on - strand at 91.322 kb on + strand, within EX31_RS21730 at 91.322 kb on + strand, within EX31_RS21730 at 91.334 kb on - strand, within EX31_RS21730 at 91.399 kb on + strand, within EX31_RS21730 at 91.399 kb on + strand, within EX31_RS21730 at 91.400 kb on - strand, within EX31_RS21730 at 91.402 kb on + strand, within EX31_RS21730 at 91.402 kb on + strand, within EX31_RS21730 at 91.402 kb on + strand, within EX31_RS21730 at 91.402 kb on + strand, within EX31_RS21730 at 91.403 kb on - strand, within EX31_RS21730 at 91.403 kb on - strand, within EX31_RS21730 at 91.425 kb on - strand, within EX31_RS21730 at 91.425 kb on - strand, within EX31_RS21730 at 91.432 kb on + strand, within EX31_RS21730 at 91.432 kb on + strand, within EX31_RS21730 at 91.432 kb on + strand, within EX31_RS21730 at 91.432 kb on + strand, within EX31_RS21730 at 91.432 kb on + strand, within EX31_RS21730 at 91.432 kb on + strand, within EX31_RS21730 at 91.432 kb on + strand, within EX31_RS21730 at 91.432 kb on + strand, within EX31_RS21730 at 91.432 kb on + strand, within EX31_RS21730 at 91.433 kb on - strand, within EX31_RS21730 at 91.433 kb on - strand, within EX31_RS21730 at 91.433 kb on - strand, within EX31_RS21730 at 91.433 kb on - strand, within EX31_RS21730 at 91.433 kb on - strand, within EX31_RS21730 at 91.433 kb on - strand, within EX31_RS21730 at 91.433 kb on - strand, within EX31_RS21730 at 91.435 kb on - strand, within EX31_RS21730 at 91.459 kb on + strand, within EX31_RS21730 at 91.459 kb on + strand, within EX31_RS21730 at 91.485 kb on + strand, within EX31_RS21730 at 91.485 kb on + strand, within EX31_RS21730 at 91.485 kb on + strand, within EX31_RS21730 at 91.486 kb on - strand, within EX31_RS21730 at 91.533 kb on + strand, within EX31_RS21730 at 91.533 kb on + strand, within EX31_RS21730 at 91.534 kb on - strand, within EX31_RS21730
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 89,061 + -1.1 89,061 + -1.4 89,061 + -0.2 89,062 - -0.1 89,062 - -0.0 89,062 - -0.4 89,062 - +0.4 89,128 + -0.1 89,212 + -0.3 89,562 + EX31_RS25615 0.45 +1.1 89,627 - -1.0 89,627 - +0.3 89,643 + -0.5 89,787 - +0.8 89,815 + +0.2 89,815 + +0.3 89,817 + +0.4 89,817 + -0.5 89,817 + -0.6 90,033 - +0.1 90,044 + -0.7 90,045 - +0.5 90,045 - +0.4 90,058 - -1.0 90,065 - -0.1 90,065 - -0.4 90,120 - EX31_RS21720 0.12 +0.6 90,120 - EX31_RS21720 0.12 +0.4 90,120 - EX31_RS21720 0.12 -0.2 90,120 - EX31_RS21720 0.12 -0.6 90,120 - EX31_RS21720 0.12 -0.2 90,161 + EX31_RS21720 0.20 -0.0 90,162 - EX31_RS21720 0.20 -0.3 90,179 + EX31_RS21720 0.23 -0.5 90,186 + EX31_RS21720 0.24 -0.2 90,187 - EX31_RS21720 0.25 +0.2 90,212 - EX31_RS21720 0.29 -0.1 90,212 - EX31_RS21720 0.29 -0.7 90,215 + EX31_RS21720 0.30 -0.6 90,216 - EX31_RS21720 0.30 -0.5 90,216 - EX31_RS21720 0.30 -0.9 90,216 - EX31_RS21720 0.30 -1.3 90,258 + EX31_RS21720 0.38 -1.0 90,258 + EX31_RS21720 0.38 -0.1 90,258 + EX31_RS21720 0.38 -1.5 90,259 - EX31_RS21720 0.38 -0.6 90,304 + EX31_RS21720 0.47 -0.6 90,323 + EX31_RS21720 0.50 -1.2 90,323 + EX31_RS21720 0.50 +0.3 90,323 + EX31_RS21720 0.50 -0.8 90,417 - EX31_RS21720 0.68 -0.4 90,452 - EX31_RS21720 0.75 +0.3 90,472 + EX31_RS21720 0.78 +0.2 90,473 - EX31_RS21720 0.79 +0.2 90,570 - +0.6 90,570 - -0.2 90,570 - +0.5 90,570 - +0.1 90,570 - -0.5 90,605 + +1.4 90,606 - +0.5 90,606 - +0.2 90,660 - EX31_RS21725 0.24 +0.2 90,680 - EX31_RS21725 0.31 +0.2 90,680 - EX31_RS21725 0.31 -0.0 90,680 - EX31_RS21725 0.31 +0.1 90,680 - EX31_RS21725 0.31 +0.7 90,680 - EX31_RS21725 0.31 +0.5 90,680 - EX31_RS21725 0.31 -0.2 90,680 - EX31_RS21725 0.31 +0.9 90,680 - EX31_RS21725 0.31 +0.3 90,680 - EX31_RS21725 0.31 -0.9 90,680 - EX31_RS21725 0.31 +0.7 90,746 - EX31_RS21725 0.51 -0.7 90,746 - EX31_RS21725 0.51 +0.5 90,764 - EX31_RS21725 0.57 -0.2 90,764 - EX31_RS21725 0.57 -0.3 90,764 - EX31_RS21725 0.57 +0.4 90,764 - EX31_RS21725 0.57 +0.4 90,764 - EX31_RS21725 0.57 -0.1 90,769 - EX31_RS21725 0.58 -0.1 90,769 - EX31_RS21725 0.58 +0.7 90,769 - EX31_RS21725 0.58 +0.6 90,769 - EX31_RS21725 0.58 +0.3 90,802 - EX31_RS21725 0.69 +0.1 90,802 - EX31_RS21725 0.69 +0.1 90,802 - EX31_RS21725 0.69 +0.3 90,802 - EX31_RS21725 0.69 +0.1 90,815 - EX31_RS21725 0.73 +0.4 90,815 - EX31_RS21725 0.73 -0.1 90,868 - EX31_RS21725 0.90 +0.7 90,868 - EX31_RS21725 0.90 +0.4 90,868 - EX31_RS21725 0.90 +0.7 90,868 - EX31_RS21725 0.90 +0.1 90,868 - EX31_RS21725 0.90 -0.4 90,892 - +0.1 90,951 + +0.4 90,951 + -0.3 90,952 - +0.7 90,953 + -0.3 91,058 + -0.4 91,059 - -0.0 91,059 - +0.6 91,150 + -0.2 91,151 - +1.7 91,152 + +0.6 91,152 + -0.2 91,152 + -0.3 91,152 + -0.3 91,152 + -0.1 91,152 + -0.0 91,152 + -0.5 91,153 - -0.1 91,153 - -0.7 91,153 - -0.8 91,153 - -1.5 91,168 + +0.9 91,191 + +1.0 91,191 + +0.4 91,192 - +1.3 91,208 - +0.2 91,213 + +0.5 91,213 + +0.7 91,213 + +0.0 91,214 - +0.2 91,224 + +0.7 91,230 + -0.3 91,231 - -0.8 91,231 - +1.2 91,234 + +0.3 91,234 + +1.2 91,234 + +1.1 91,234 + +0.3 91,234 + -0.2 91,235 - -0.2 91,235 - +0.7 91,235 - +1.1 91,257 + +0.2 91,257 + +0.4 91,257 + -0.0 91,258 - -0.4 91,258 - +2.1 91,322 + EX31_RS21730 0.20 -0.0 91,322 + EX31_RS21730 0.20 -0.7 91,334 - EX31_RS21730 0.23 +0.3 91,399 + EX31_RS21730 0.42 +0.2 91,399 + EX31_RS21730 0.42 -0.3 91,400 - EX31_RS21730 0.42 -0.4 91,402 + EX31_RS21730 0.43 +0.4 91,402 + EX31_RS21730 0.43 -1.0 91,402 + EX31_RS21730 0.43 +0.3 91,402 + EX31_RS21730 0.43 -0.7 91,403 - EX31_RS21730 0.43 -1.3 91,403 - EX31_RS21730 0.43 +0.5 91,425 - EX31_RS21730 0.49 -0.2 91,425 - EX31_RS21730 0.49 +1.4 91,432 + EX31_RS21730 0.51 +0.1 91,432 + EX31_RS21730 0.51 -0.1 91,432 + EX31_RS21730 0.51 -0.2 91,432 + EX31_RS21730 0.51 +0.0 91,432 + EX31_RS21730 0.51 -0.1 91,432 + EX31_RS21730 0.51 -0.1 91,432 + EX31_RS21730 0.51 +0.1 91,432 + EX31_RS21730 0.51 -0.3 91,432 + EX31_RS21730 0.51 +0.5 91,433 - EX31_RS21730 0.52 -0.1 91,433 - EX31_RS21730 0.52 +0.2 91,433 - EX31_RS21730 0.52 +0.0 91,433 - EX31_RS21730 0.52 -1.7 91,433 - EX31_RS21730 0.52 -0.5 91,433 - EX31_RS21730 0.52 -1.8 91,433 - EX31_RS21730 0.52 -0.2 91,435 - EX31_RS21730 0.52 -0.3 91,459 + EX31_RS21730 0.59 -0.0 91,459 + EX31_RS21730 0.59 -0.3 91,485 + EX31_RS21730 0.67 +0.3 91,485 + EX31_RS21730 0.67 -1.0 91,485 + EX31_RS21730 0.67 -1.0 91,486 - EX31_RS21730 0.67 -0.1 91,533 + EX31_RS21730 0.80 -0.9 91,533 + EX31_RS21730 0.80 -0.1 91,534 - EX31_RS21730 0.81 +1.6
Or see this region's nucleotide sequence