Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS21335 and EX31_RS21340 are separated by 88 nucleotides EX31_RS21340 and EX31_RS21345 are separated by 80 nucleotides EX31_RS21345 and EX31_RS21350 are separated by 515 nucleotides
EX31_RS21335: EX31_RS21335 - fimbrial protein, at 1,123 to 3,816
_RS21335
EX31_RS21340: EX31_RS21340 - Cro/Cl family transcriptional regulator, at 3,905 to 4,408
_RS21340
EX31_RS21345: EX31_RS21345 - fimbria/pilus periplasmic chaperone, at 4,489 to 5,232
_RS21345
EX31_RS21350: EX31_RS21350 - methionine adenosyltransferase, at 5,748 to 6,899
_RS21350
Position (kb) 4
5
6 Strain fitness (log2 ratio) -2
-1
0
1 at 3.594 kb on + strand at 3.594 kb on + strand at 3.595 kb on - strand at 3.595 kb on - strand at 3.599 kb on - strand at 3.616 kb on - strand at 3.616 kb on - strand at 3.652 kb on + strand at 3.745 kb on + strand at 3.746 kb on - strand at 3.746 kb on - strand at 3.763 kb on + strand at 3.808 kb on - strand at 3.808 kb on - strand at 3.808 kb on - strand at 3.808 kb on - strand at 3.808 kb on - strand at 3.817 kb on + strand at 3.932 kb on + strand at 3.954 kb on + strand at 3.954 kb on + strand at 3.954 kb on + strand at 3.954 kb on + strand at 3.954 kb on + strand at 3.954 kb on + strand at 3.954 kb on + strand at 3.955 kb on - strand at 3.955 kb on - strand at 3.955 kb on - strand at 3.955 kb on - strand at 3.955 kb on - strand at 3.959 kb on - strand, within EX31_RS21340 at 4.027 kb on + strand, within EX31_RS21340 at 4.048 kb on + strand, within EX31_RS21340 at 4.049 kb on - strand, within EX31_RS21340 at 4.049 kb on - strand, within EX31_RS21340 at 4.049 kb on - strand, within EX31_RS21340 at 4.049 kb on - strand, within EX31_RS21340 at 4.099 kb on + strand, within EX31_RS21340 at 4.100 kb on - strand, within EX31_RS21340 at 4.100 kb on - strand, within EX31_RS21340 at 4.114 kb on + strand, within EX31_RS21340 at 4.243 kb on + strand, within EX31_RS21340 at 4.245 kb on + strand, within EX31_RS21340 at 4.245 kb on + strand, within EX31_RS21340 at 4.245 kb on + strand, within EX31_RS21340 at 4.246 kb on - strand, within EX31_RS21340 at 4.246 kb on - strand, within EX31_RS21340 at 4.246 kb on - strand, within EX31_RS21340 at 4.268 kb on + strand, within EX31_RS21340 at 4.269 kb on - strand, within EX31_RS21340 at 4.269 kb on - strand, within EX31_RS21340 at 4.271 kb on + strand, within EX31_RS21340 at 4.272 kb on - strand, within EX31_RS21340 at 4.272 kb on - strand, within EX31_RS21340 at 4.435 kb on + strand at 4.613 kb on + strand, within EX31_RS21345 at 4.613 kb on + strand, within EX31_RS21345 at 4.613 kb on + strand, within EX31_RS21345 at 4.644 kb on + strand, within EX31_RS21345 at 4.644 kb on + strand, within EX31_RS21345 at 4.675 kb on + strand, within EX31_RS21345 at 4.849 kb on - strand, within EX31_RS21345 at 4.878 kb on - strand, within EX31_RS21345 at 4.929 kb on + strand, within EX31_RS21345 at 5.093 kb on - strand, within EX31_RS21345 at 5.149 kb on + strand, within EX31_RS21345 at 5.255 kb on - strand at 5.375 kb on - strand at 5.395 kb on + strand at 5.397 kb on + strand at 5.418 kb on - strand at 5.419 kb on + strand at 5.420 kb on - strand at 5.463 kb on + strand at 5.475 kb on + strand at 5.475 kb on + strand at 5.480 kb on + strand at 5.481 kb on - strand at 5.537 kb on - strand at 5.540 kb on + strand at 5.541 kb on - strand at 5.545 kb on + strand at 5.548 kb on + strand at 5.645 kb on + strand at 5.645 kb on + strand at 5.646 kb on - strand at 5.731 kb on + strand at 5.732 kb on - strand at 5.732 kb on - strand at 5.750 kb on - strand at 5.750 kb on - strand at 5.750 kb on - strand at 5.750 kb on - strand at 5.752 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 3,594 + +0.1 3,594 + +0.6 3,595 - -1.0 3,595 - -1.8 3,599 - +0.7 3,616 - -0.2 3,616 - -0.7 3,652 + -0.3 3,745 + +1.4 3,746 - -1.5 3,746 - -0.1 3,763 + +0.1 3,808 - -0.9 3,808 - -0.1 3,808 - -0.5 3,808 - +0.9 3,808 - -0.0 3,817 + -0.2 3,932 + +0.5 3,954 + -0.3 3,954 + +0.4 3,954 + +0.2 3,954 + -1.7 3,954 + -0.2 3,954 + -0.6 3,954 + -0.3 3,955 - -0.1 3,955 - +0.8 3,955 - -0.7 3,955 - -0.1 3,955 - -0.4 3,959 - EX31_RS21340 0.11 +0.4 4,027 + EX31_RS21340 0.24 -1.4 4,048 + EX31_RS21340 0.28 -0.8 4,049 - EX31_RS21340 0.29 -0.2 4,049 - EX31_RS21340 0.29 -0.0 4,049 - EX31_RS21340 0.29 +0.1 4,049 - EX31_RS21340 0.29 -0.4 4,099 + EX31_RS21340 0.38 -0.1 4,100 - EX31_RS21340 0.39 +0.7 4,100 - EX31_RS21340 0.39 -0.4 4,114 + EX31_RS21340 0.41 +0.4 4,243 + EX31_RS21340 0.67 -1.1 4,245 + EX31_RS21340 0.67 -0.8 4,245 + EX31_RS21340 0.67 +0.8 4,245 + EX31_RS21340 0.67 +0.4 4,246 - EX31_RS21340 0.68 -0.7 4,246 - EX31_RS21340 0.68 -1.3 4,246 - EX31_RS21340 0.68 -0.5 4,268 + EX31_RS21340 0.72 -0.6 4,269 - EX31_RS21340 0.72 -0.4 4,269 - EX31_RS21340 0.72 -1.1 4,271 + EX31_RS21340 0.73 +0.2 4,272 - EX31_RS21340 0.73 -0.1 4,272 - EX31_RS21340 0.73 -0.9 4,435 + +0.4 4,613 + EX31_RS21345 0.17 +0.0 4,613 + EX31_RS21345 0.17 +0.0 4,613 + EX31_RS21345 0.17 -0.1 4,644 + EX31_RS21345 0.21 +0.4 4,644 + EX31_RS21345 0.21 -1.9 4,675 + EX31_RS21345 0.25 +0.4 4,849 - EX31_RS21345 0.48 -0.5 4,878 - EX31_RS21345 0.52 +0.6 4,929 + EX31_RS21345 0.59 +0.8 5,093 - EX31_RS21345 0.81 +1.3 5,149 + EX31_RS21345 0.89 -0.2 5,255 - +0.5 5,375 - -0.4 5,395 + -0.3 5,397 + -0.2 5,418 - -1.7 5,419 + -0.3 5,420 - -1.2 5,463 + -0.3 5,475 + -1.3 5,475 + +0.4 5,480 + +0.1 5,481 - -0.1 5,537 - -2.1 5,540 + +0.1 5,541 - +0.2 5,545 + -0.6 5,548 + -0.3 5,645 + -0.1 5,645 + -0.5 5,646 - -1.2 5,731 + -1.4 5,732 - -0.6 5,732 - +0.3 5,750 - +0.4 5,750 - +0.3 5,750 - +0.0 5,750 - +0.6 5,752 - +0.0
Or see this region's nucleotide sequence