Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19660 and EX31_RS19665 are separated by 73 nucleotides EX31_RS19665 and EX31_RS19670 are separated by 24 nucleotides EX31_RS19670 and EX31_RS19675 are separated by 102 nucleotides
EX31_RS19660: EX31_RS19660 - bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC, at 564,575 to 566,605
_RS19660
EX31_RS19665: EX31_RS19665 - YfcL family protein, at 566,679 to 566,957
_RS19665
EX31_RS19670: EX31_RS19670 - elongation factor P hydroxylase, at 566,982 to 567,539
_RS19670
EX31_RS19675: EX31_RS19675 - TSUP family transporter, at 567,642 to 568,442
_RS19675
Position (kb) 566
567 Strain fitness (log2 ratio) -2
-1
0
1
2 at 565.985 kb on - strand, within EX31_RS19660 at 566.099 kb on + strand, within EX31_RS19660 at 566.099 kb on + strand, within EX31_RS19660 at 566.099 kb on + strand, within EX31_RS19660 at 566.099 kb on + strand, within EX31_RS19660 at 566.099 kb on + strand, within EX31_RS19660 at 566.100 kb on - strand, within EX31_RS19660 at 566.100 kb on - strand, within EX31_RS19660 at 566.100 kb on - strand, within EX31_RS19660 at 566.100 kb on - strand, within EX31_RS19660 at 566.100 kb on - strand, within EX31_RS19660 at 566.101 kb on + strand, within EX31_RS19660 at 566.101 kb on + strand, within EX31_RS19660 at 566.101 kb on + strand, within EX31_RS19660 at 566.101 kb on + strand, within EX31_RS19660 at 566.101 kb on + strand, within EX31_RS19660 at 566.101 kb on + strand, within EX31_RS19660 at 566.101 kb on + strand, within EX31_RS19660 at 566.101 kb on + strand, within EX31_RS19660 at 566.101 kb on + strand, within EX31_RS19660 at 566.101 kb on + strand, within EX31_RS19660 at 566.102 kb on - strand, within EX31_RS19660 at 566.102 kb on - strand, within EX31_RS19660 at 566.102 kb on - strand, within EX31_RS19660 at 566.137 kb on + strand, within EX31_RS19660 at 566.137 kb on + strand, within EX31_RS19660 at 566.137 kb on + strand, within EX31_RS19660 at 566.138 kb on - strand, within EX31_RS19660 at 566.150 kb on + strand, within EX31_RS19660 at 566.215 kb on - strand, within EX31_RS19660 at 566.257 kb on + strand, within EX31_RS19660 at 566.257 kb on + strand, within EX31_RS19660 at 566.258 kb on - strand, within EX31_RS19660 at 566.357 kb on + strand, within EX31_RS19660 at 566.357 kb on + strand, within EX31_RS19660 at 566.357 kb on + strand, within EX31_RS19660 at 566.414 kb on + strand at 566.604 kb on - strand at 566.680 kb on + strand at 566.680 kb on + strand at 566.681 kb on - strand at 566.869 kb on + strand, within EX31_RS19665 at 566.883 kb on + strand, within EX31_RS19665 at 566.884 kb on - strand, within EX31_RS19665 at 566.884 kb on - strand, within EX31_RS19665 at 566.913 kb on - strand, within EX31_RS19665 at 566.913 kb on - strand, within EX31_RS19665 at 566.928 kb on + strand, within EX31_RS19665 at 566.929 kb on - strand, within EX31_RS19665 at 566.929 kb on - strand, within EX31_RS19665 at 566.959 kb on - strand at 567.033 kb on - strand at 567.098 kb on + strand, within EX31_RS19670 at 567.098 kb on + strand, within EX31_RS19670 at 567.099 kb on - strand, within EX31_RS19670 at 567.099 kb on - strand, within EX31_RS19670 at 567.099 kb on - strand, within EX31_RS19670 at 567.177 kb on - strand, within EX31_RS19670 at 567.177 kb on - strand, within EX31_RS19670 at 567.177 kb on - strand, within EX31_RS19670 at 567.177 kb on - strand, within EX31_RS19670 at 567.177 kb on - strand, within EX31_RS19670 at 567.290 kb on - strand, within EX31_RS19670 at 567.315 kb on - strand, within EX31_RS19670 at 567.370 kb on + strand, within EX31_RS19670 at 567.371 kb on - strand, within EX31_RS19670 at 567.371 kb on - strand, within EX31_RS19670 at 567.373 kb on + strand, within EX31_RS19670 at 567.399 kb on - strand, within EX31_RS19670 at 567.427 kb on + strand, within EX31_RS19670 at 567.427 kb on + strand, within EX31_RS19670 at 567.427 kb on + strand, within EX31_RS19670 at 567.427 kb on + strand, within EX31_RS19670 at 567.428 kb on - strand, within EX31_RS19670 at 567.453 kb on + strand, within EX31_RS19670 at 567.464 kb on + strand, within EX31_RS19670 at 567.511 kb on + strand at 567.511 kb on + strand at 567.511 kb on + strand at 567.511 kb on + strand at 567.511 kb on + strand at 567.511 kb on + strand at 567.511 kb on + strand at 567.511 kb on + strand at 567.512 kb on - strand at 567.512 kb on - strand at 567.512 kb on - strand at 567.512 kb on - strand at 567.512 kb on - strand at 567.512 kb on - strand at 567.512 kb on - strand at 567.512 kb on - strand at 567.512 kb on - strand at 567.512 kb on - strand at 567.512 kb on - strand at 567.512 kb on - strand at 567.512 kb on - strand at 567.512 kb on - strand at 567.512 kb on - strand at 567.515 kb on + strand at 567.515 kb on + strand at 567.515 kb on + strand at 567.515 kb on + strand at 567.515 kb on + strand at 567.515 kb on + strand at 567.515 kb on + strand at 567.515 kb on + strand at 567.516 kb on - strand at 567.516 kb on - strand at 567.516 kb on - strand at 567.516 kb on - strand at 567.516 kb on - strand at 567.516 kb on - strand at 567.516 kb on - strand at 567.516 kb on - strand at 567.516 kb on - strand at 567.516 kb on - strand at 567.516 kb on - strand at 567.516 kb on - strand at 567.516 kb on - strand at 567.539 kb on + strand at 567.539 kb on + strand at 567.539 kb on + strand at 567.539 kb on + strand at 567.539 kb on + strand at 567.540 kb on - strand at 567.540 kb on - strand at 567.540 kb on - strand at 567.540 kb on - strand at 567.540 kb on - strand at 567.581 kb on + strand at 567.581 kb on + strand at 567.581 kb on + strand at 567.581 kb on + strand at 567.582 kb on - strand at 567.582 kb on - strand at 567.582 kb on - strand at 567.583 kb on + strand at 567.583 kb on + strand at 567.583 kb on + strand at 567.583 kb on + strand at 567.583 kb on + strand at 567.584 kb on - strand at 567.584 kb on - strand at 567.584 kb on - strand at 567.584 kb on - strand at 567.584 kb on - strand at 567.645 kb on + strand at 567.645 kb on + strand at 567.646 kb on - strand at 567.646 kb on - strand at 567.646 kb on - strand at 567.646 kb on - strand at 567.658 kb on - strand at 567.691 kb on + strand at 567.692 kb on - strand at 567.770 kb on + strand, within EX31_RS19675 at 567.770 kb on + strand, within EX31_RS19675 at 567.771 kb on - strand, within EX31_RS19675 at 567.771 kb on - strand, within EX31_RS19675 at 567.771 kb on - strand, within EX31_RS19675 at 567.771 kb on - strand, within EX31_RS19675 at 567.771 kb on - strand, within EX31_RS19675 at 567.849 kb on + strand, within EX31_RS19675 at 567.851 kb on + strand, within EX31_RS19675 at 567.852 kb on - strand, within EX31_RS19675 at 567.852 kb on - strand, within EX31_RS19675 at 567.852 kb on - strand, within EX31_RS19675 at 567.852 kb on - strand, within EX31_RS19675 at 567.881 kb on + strand, within EX31_RS19675 at 567.924 kb on - strand, within EX31_RS19675 at 567.933 kb on + strand, within EX31_RS19675 at 567.956 kb on - strand, within EX31_RS19675
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 565,985 - EX31_RS19660 0.69 -0.6 566,099 + EX31_RS19660 0.75 +0.7 566,099 + EX31_RS19660 0.75 -0.5 566,099 + EX31_RS19660 0.75 +0.3 566,099 + EX31_RS19660 0.75 +0.1 566,099 + EX31_RS19660 0.75 +0.2 566,100 - EX31_RS19660 0.75 -2.2 566,100 - EX31_RS19660 0.75 -0.2 566,100 - EX31_RS19660 0.75 -0.0 566,100 - EX31_RS19660 0.75 +0.2 566,100 - EX31_RS19660 0.75 +1.0 566,101 + EX31_RS19660 0.75 +0.5 566,101 + EX31_RS19660 0.75 -0.2 566,101 + EX31_RS19660 0.75 +0.1 566,101 + EX31_RS19660 0.75 -0.3 566,101 + EX31_RS19660 0.75 +0.6 566,101 + EX31_RS19660 0.75 +0.2 566,101 + EX31_RS19660 0.75 -0.1 566,101 + EX31_RS19660 0.75 -0.9 566,101 + EX31_RS19660 0.75 -0.6 566,101 + EX31_RS19660 0.75 +0.6 566,102 - EX31_RS19660 0.75 +0.3 566,102 - EX31_RS19660 0.75 -0.1 566,102 - EX31_RS19660 0.75 -1.7 566,137 + EX31_RS19660 0.77 +1.0 566,137 + EX31_RS19660 0.77 -0.5 566,137 + EX31_RS19660 0.77 -0.4 566,138 - EX31_RS19660 0.77 -0.7 566,150 + EX31_RS19660 0.78 -0.4 566,215 - EX31_RS19660 0.81 -0.7 566,257 + EX31_RS19660 0.83 -0.4 566,257 + EX31_RS19660 0.83 +0.1 566,258 - EX31_RS19660 0.83 +0.7 566,357 + EX31_RS19660 0.88 -0.6 566,357 + EX31_RS19660 0.88 -0.2 566,357 + EX31_RS19660 0.88 +0.8 566,414 + +0.3 566,604 - -2.4 566,680 + -0.1 566,680 + -1.0 566,681 - -0.2 566,869 + EX31_RS19665 0.68 -0.8 566,883 + EX31_RS19665 0.73 -0.6 566,884 - EX31_RS19665 0.73 -0.0 566,884 - EX31_RS19665 0.73 -0.5 566,913 - EX31_RS19665 0.84 -1.3 566,913 - EX31_RS19665 0.84 -1.7 566,928 + EX31_RS19665 0.89 -0.5 566,929 - EX31_RS19665 0.90 -0.3 566,929 - EX31_RS19665 0.90 +0.6 566,959 - +0.2 567,033 - +0.4 567,098 + EX31_RS19670 0.21 -0.8 567,098 + EX31_RS19670 0.21 -0.4 567,099 - EX31_RS19670 0.21 -0.4 567,099 - EX31_RS19670 0.21 -0.4 567,099 - EX31_RS19670 0.21 +0.1 567,177 - EX31_RS19670 0.35 +0.2 567,177 - EX31_RS19670 0.35 +0.7 567,177 - EX31_RS19670 0.35 -0.3 567,177 - EX31_RS19670 0.35 +0.4 567,177 - EX31_RS19670 0.35 -0.9 567,290 - EX31_RS19670 0.55 -0.6 567,315 - EX31_RS19670 0.60 -0.7 567,370 + EX31_RS19670 0.70 -1.5 567,371 - EX31_RS19670 0.70 -0.8 567,371 - EX31_RS19670 0.70 -0.8 567,373 + EX31_RS19670 0.70 +0.4 567,399 - EX31_RS19670 0.75 -0.4 567,427 + EX31_RS19670 0.80 -0.3 567,427 + EX31_RS19670 0.80 +0.9 567,427 + EX31_RS19670 0.80 +0.3 567,427 + EX31_RS19670 0.80 +0.6 567,428 - EX31_RS19670 0.80 -0.3 567,453 + EX31_RS19670 0.84 +0.3 567,464 + EX31_RS19670 0.86 +0.3 567,511 + +0.7 567,511 + +0.6 567,511 + +1.0 567,511 + +0.7 567,511 + +0.3 567,511 + -0.1 567,511 + +0.1 567,511 + +0.7 567,512 - +0.2 567,512 - -0.1 567,512 - +0.3 567,512 - -0.2 567,512 - +0.7 567,512 - -0.0 567,512 - +0.8 567,512 - -0.8 567,512 - +0.3 567,512 - +1.0 567,512 - +0.0 567,512 - -0.2 567,512 - +0.5 567,512 - +0.1 567,512 - +0.4 567,515 + +1.2 567,515 + +0.7 567,515 + -0.5 567,515 + -0.4 567,515 + +0.5 567,515 + -0.4 567,515 + +0.5 567,515 + -0.1 567,516 - +0.2 567,516 - +0.4 567,516 - -0.1 567,516 - -0.7 567,516 - +0.2 567,516 - +0.1 567,516 - +0.0 567,516 - +0.2 567,516 - -0.1 567,516 - -1.2 567,516 - -0.2 567,516 - -0.8 567,516 - -1.4 567,539 + -0.3 567,539 + +0.6 567,539 + -0.1 567,539 + -0.0 567,539 + +0.3 567,540 - +0.5 567,540 - -0.3 567,540 - +1.7 567,540 - +0.5 567,540 - +0.4 567,581 + +0.2 567,581 + +0.3 567,581 + +1.9 567,581 + +0.6 567,582 - -0.9 567,582 - -0.6 567,582 - +0.7 567,583 + +1.0 567,583 + -0.4 567,583 + +0.2 567,583 + -0.2 567,583 + +0.1 567,584 - +1.2 567,584 - +0.1 567,584 - -2.0 567,584 - +0.6 567,584 - -1.4 567,645 + -1.0 567,645 + -0.0 567,646 - +0.6 567,646 - -0.4 567,646 - -0.0 567,646 - +0.8 567,658 - +0.3 567,691 + +0.6 567,692 - -0.0 567,770 + EX31_RS19675 0.16 +0.3 567,770 + EX31_RS19675 0.16 -1.3 567,771 - EX31_RS19675 0.16 +0.3 567,771 - EX31_RS19675 0.16 +0.4 567,771 - EX31_RS19675 0.16 +0.3 567,771 - EX31_RS19675 0.16 +0.3 567,771 - EX31_RS19675 0.16 -0.4 567,849 + EX31_RS19675 0.26 -0.1 567,851 + EX31_RS19675 0.26 +1.1 567,852 - EX31_RS19675 0.26 -0.2 567,852 - EX31_RS19675 0.26 -0.1 567,852 - EX31_RS19675 0.26 +0.1 567,852 - EX31_RS19675 0.26 -0.0 567,881 + EX31_RS19675 0.30 +0.1 567,924 - EX31_RS19675 0.35 +0.5 567,933 + EX31_RS19675 0.36 -1.4 567,956 - EX31_RS19675 0.39 +0.1
Or see this region's nucleotide sequence