Strain Fitness in Rahnella sp. WP5 around EX31_RS17465

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17455 and EX31_RS17460 overlap by 8 nucleotidesEX31_RS17460 and EX31_RS17465 are separated by 245 nucleotidesEX31_RS17465 and EX31_RS17470 are separated by 83 nucleotides EX31_RS17455: EX31_RS17455 - carbon starvation protein A, at 42,988 to 45,054 _RS17455 EX31_RS17460: EX31_RS17460 - putative selenoprotein, at 45,047 to 45,352 _RS17460 EX31_RS17465: EX31_RS17465 - hypothetical protein, at 45,598 to 45,933 _RS17465 EX31_RS17470: EX31_RS17470 - nitrogen assimilation transcriptional regulator, at 46,017 to 46,943 _RS17470 Position (kb) 45 46Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 44.603 kb on + strand, within EX31_RS17455at 44.603 kb on + strand, within EX31_RS17455at 44.604 kb on - strand, within EX31_RS17455at 44.607 kb on + strand, within EX31_RS17455at 44.607 kb on + strand, within EX31_RS17455at 44.607 kb on + strand, within EX31_RS17455at 44.607 kb on + strand, within EX31_RS17455at 44.607 kb on + strand, within EX31_RS17455at 44.607 kb on + strand, within EX31_RS17455at 44.608 kb on - strand, within EX31_RS17455at 44.608 kb on - strand, within EX31_RS17455at 44.608 kb on - strand, within EX31_RS17455at 44.634 kb on + strand, within EX31_RS17455at 44.730 kb on + strand, within EX31_RS17455at 44.730 kb on + strand, within EX31_RS17455at 44.731 kb on - strand, within EX31_RS17455at 44.743 kb on - strand, within EX31_RS17455at 44.743 kb on - strand, within EX31_RS17455at 44.743 kb on - strand, within EX31_RS17455at 45.027 kb on - strandat 45.067 kb on - strandat 45.094 kb on - strand, within EX31_RS17460at 45.172 kb on - strand, within EX31_RS17460at 45.172 kb on - strand, within EX31_RS17460at 45.227 kb on + strand, within EX31_RS17460at 45.227 kb on + strand, within EX31_RS17460at 45.227 kb on + strand, within EX31_RS17460at 45.227 kb on + strand, within EX31_RS17460at 45.361 kb on + strandat 45.394 kb on + strandat 45.464 kb on - strandat 45.464 kb on - strandat 45.542 kb on + strandat 45.542 kb on + strandat 45.543 kb on - strandat 45.543 kb on - strandat 45.556 kb on + strandat 45.562 kb on + strandat 45.563 kb on - strandat 45.597 kb on + strandat 45.597 kb on + strandat 45.598 kb on - strandat 45.598 kb on - strandat 45.598 kb on - strandat 45.645 kb on + strand, within EX31_RS17465at 45.645 kb on + strand, within EX31_RS17465at 45.650 kb on + strand, within EX31_RS17465at 45.651 kb on - strand, within EX31_RS17465at 45.651 kb on - strand, within EX31_RS17465at 45.651 kb on - strand, within EX31_RS17465at 45.694 kb on + strand, within EX31_RS17465at 45.694 kb on + strand, within EX31_RS17465at 45.913 kb on + strandat 45.913 kb on + strandat 45.913 kb on + strandat 45.913 kb on + strandat 45.913 kb on + strandat 45.913 kb on + strandat 45.914 kb on - strandat 45.914 kb on - strandat 45.914 kb on - strandat 45.914 kb on - strandat 45.932 kb on - strandat 45.963 kb on - strandat 46.229 kb on + strand, within EX31_RS17470at 46.230 kb on - strand, within EX31_RS17470at 46.305 kb on + strand, within EX31_RS17470at 46.306 kb on - strand, within EX31_RS17470at 46.405 kb on + strand, within EX31_RS17470at 46.406 kb on - strand, within EX31_RS17470at 46.406 kb on - strand, within EX31_RS17470at 46.406 kb on - strand, within EX31_RS17470at 46.406 kb on - strand, within EX31_RS17470at 46.406 kb on - strand, within EX31_RS17470at 46.445 kb on - strand, within EX31_RS17470at 46.445 kb on - strand, within EX31_RS17470at 46.536 kb on + strand, within EX31_RS17470at 46.537 kb on - strand, within EX31_RS17470at 46.573 kb on + strand, within EX31_RS17470at 46.758 kb on - strand, within EX31_RS17470at 46.760 kb on + strand, within EX31_RS17470at 46.760 kb on + strand, within EX31_RS17470at 46.921 kb on + strandat 46.921 kb on + strandat 46.921 kb on + strandat 46.922 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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44,603 + EX31_RS17455 0.78 -1.4
44,603 + EX31_RS17455 0.78 -1.5
44,604 - EX31_RS17455 0.78 +0.8
44,607 + EX31_RS17455 0.78 +0.3
44,607 + EX31_RS17455 0.78 +0.6
44,607 + EX31_RS17455 0.78 -0.7
44,607 + EX31_RS17455 0.78 +0.8
44,607 + EX31_RS17455 0.78 -1.5
44,607 + EX31_RS17455 0.78 +1.8
44,608 - EX31_RS17455 0.78 -0.3
44,608 - EX31_RS17455 0.78 +0.1
44,608 - EX31_RS17455 0.78 +0.4
44,634 + EX31_RS17455 0.80 -0.5
44,730 + EX31_RS17455 0.84 +0.9
44,730 + EX31_RS17455 0.84 -0.3
44,731 - EX31_RS17455 0.84 +0.3
44,743 - EX31_RS17455 0.85 -0.3
44,743 - EX31_RS17455 0.85 -0.3
44,743 - EX31_RS17455 0.85 -1.0
45,027 - +0.1
45,067 - +0.2
45,094 - EX31_RS17460 0.15 -0.2
45,172 - EX31_RS17460 0.41 -1.3
45,172 - EX31_RS17460 0.41 -0.0
45,227 + EX31_RS17460 0.59 +1.1
45,227 + EX31_RS17460 0.59 -0.4
45,227 + EX31_RS17460 0.59 +0.4
45,227 + EX31_RS17460 0.59 -0.2
45,361 + -0.8
45,394 + +0.1
45,464 - -0.7
45,464 - +2.4
45,542 + -0.2
45,542 + +1.0
45,543 - -1.5
45,543 - +0.4
45,556 + +0.4
45,562 + -0.7
45,563 - -0.1
45,597 + +1.2
45,597 + +0.3
45,598 - +0.4
45,598 - -1.4
45,598 - -0.2
45,645 + EX31_RS17465 0.14 -1.1
45,645 + EX31_RS17465 0.14 +0.2
45,650 + EX31_RS17465 0.15 -0.2
45,651 - EX31_RS17465 0.16 -0.2
45,651 - EX31_RS17465 0.16 -0.3
45,651 - EX31_RS17465 0.16 -3.1
45,694 + EX31_RS17465 0.29 -1.5
45,694 + EX31_RS17465 0.29 -1.4
45,913 + +0.2
45,913 + -0.2
45,913 + +0.5
45,913 + +0.3
45,913 + -1.7
45,913 + +0.3
45,914 - -1.6
45,914 - +0.0
45,914 - -0.5
45,914 - -1.6
45,932 - -1.1
45,963 - -0.4
46,229 + EX31_RS17470 0.23 +1.7
46,230 - EX31_RS17470 0.23 +0.5
46,305 + EX31_RS17470 0.31 -0.2
46,306 - EX31_RS17470 0.31 -0.1
46,405 + EX31_RS17470 0.42 -0.6
46,406 - EX31_RS17470 0.42 +0.0
46,406 - EX31_RS17470 0.42 -0.6
46,406 - EX31_RS17470 0.42 -0.9
46,406 - EX31_RS17470 0.42 -0.7
46,406 - EX31_RS17470 0.42 +0.5
46,445 - EX31_RS17470 0.46 +0.3
46,445 - EX31_RS17470 0.46 +0.1
46,536 + EX31_RS17470 0.56 -0.3
46,537 - EX31_RS17470 0.56 +0.4
46,573 + EX31_RS17470 0.60 -0.3
46,758 - EX31_RS17470 0.80 +0.3
46,760 + EX31_RS17470 0.80 +0.2
46,760 + EX31_RS17470 0.80 +0.8
46,921 + -0.0
46,921 + +1.3
46,921 + -0.3
46,922 - -0.3

Or see this region's nucleotide sequence