Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16700 and EX31_RS16705 are separated by 34 nucleotides EX31_RS16705 and EX31_RS16710 overlap by 4 nucleotides EX31_RS16710 and EX31_RS16715 are separated by 4 nucleotides
EX31_RS16700: EX31_RS16700 - ABC transporter substrate-binding protein, at 23,158 to 24,042
_RS16700
EX31_RS16705: EX31_RS16705 - ABC transporter permease, at 24,077 to 24,784
_RS16705
EX31_RS16710: EX31_RS16710 - ABC transporter permease subunit, at 24,781 to 25,431
_RS16710
EX31_RS16715: EX31_RS16715 - ATP-binding cassette domain-containing protein, at 25,436 to 26,530
_RS16715
Position (kb) 24
25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 23.829 kb on + strand, within EX31_RS16700 at 23.829 kb on + strand, within EX31_RS16700 at 23.830 kb on - strand, within EX31_RS16700 at 23.830 kb on - strand, within EX31_RS16700 at 23.830 kb on - strand, within EX31_RS16700 at 23.830 kb on - strand, within EX31_RS16700 at 23.831 kb on + strand, within EX31_RS16700 at 23.831 kb on + strand, within EX31_RS16700 at 23.831 kb on + strand, within EX31_RS16700 at 23.831 kb on + strand, within EX31_RS16700 at 23.831 kb on + strand, within EX31_RS16700 at 23.831 kb on + strand, within EX31_RS16700 at 23.832 kb on - strand, within EX31_RS16700 at 23.832 kb on - strand, within EX31_RS16700 at 23.832 kb on - strand, within EX31_RS16700 at 23.832 kb on - strand, within EX31_RS16700 at 23.832 kb on - strand, within EX31_RS16700 at 23.832 kb on - strand, within EX31_RS16700 at 23.832 kb on - strand, within EX31_RS16700 at 23.851 kb on - strand, within EX31_RS16700 at 23.851 kb on - strand, within EX31_RS16700 at 23.854 kb on - strand, within EX31_RS16700 at 23.901 kb on - strand, within EX31_RS16700 at 23.904 kb on + strand, within EX31_RS16700 at 23.905 kb on - strand, within EX31_RS16700 at 23.905 kb on - strand, within EX31_RS16700 at 23.950 kb on - strand, within EX31_RS16700 at 23.950 kb on - strand, within EX31_RS16700 at 23.950 kb on - strand, within EX31_RS16700 at 24.073 kb on + strand at 24.074 kb on - strand at 24.129 kb on - strand at 24.171 kb on - strand, within EX31_RS16705 at 24.341 kb on + strand, within EX31_RS16705 at 24.366 kb on - strand, within EX31_RS16705 at 24.456 kb on + strand, within EX31_RS16705 at 24.457 kb on - strand, within EX31_RS16705 at 24.458 kb on + strand, within EX31_RS16705 at 24.518 kb on - strand, within EX31_RS16705 at 24.540 kb on - strand, within EX31_RS16705 at 24.618 kb on - strand, within EX31_RS16705 at 24.618 kb on - strand, within EX31_RS16705 at 24.620 kb on + strand, within EX31_RS16705 at 24.652 kb on - strand, within EX31_RS16705 at 24.652 kb on - strand, within EX31_RS16705 at 24.706 kb on - strand, within EX31_RS16705 at 24.778 kb on + strand at 24.907 kb on + strand, within EX31_RS16710 at 24.907 kb on + strand, within EX31_RS16710 at 24.924 kb on + strand, within EX31_RS16710 at 25.005 kb on + strand, within EX31_RS16710 at 25.006 kb on - strand, within EX31_RS16710 at 25.006 kb on - strand, within EX31_RS16710 at 25.006 kb on - strand, within EX31_RS16710 at 25.189 kb on - strand, within EX31_RS16710 at 25.223 kb on - strand, within EX31_RS16710 at 25.232 kb on - strand, within EX31_RS16710 at 25.264 kb on + strand, within EX31_RS16710 at 25.268 kb on - strand, within EX31_RS16710 at 25.268 kb on - strand, within EX31_RS16710 at 25.268 kb on - strand, within EX31_RS16710 at 25.326 kb on + strand, within EX31_RS16710 at 25.348 kb on + strand, within EX31_RS16710 at 25.367 kb on + strand at 25.368 kb on - strand at 25.390 kb on + strand at 25.414 kb on + strand at 25.544 kb on + strand at 25.545 kb on - strand at 25.607 kb on - strand, within EX31_RS16715 at 25.607 kb on - strand, within EX31_RS16715 at 25.650 kb on + strand, within EX31_RS16715 at 25.651 kb on - strand, within EX31_RS16715 at 25.768 kb on + strand, within EX31_RS16715 at 25.768 kb on + strand, within EX31_RS16715 at 25.798 kb on + strand, within EX31_RS16715 at 25.856 kb on - strand, within EX31_RS16715 at 25.856 kb on - strand, within EX31_RS16715 at 25.856 kb on - strand, within EX31_RS16715 at 25.856 kb on - strand, within EX31_RS16715 at 25.961 kb on - strand, within EX31_RS16715 at 25.964 kb on - strand, within EX31_RS16715 at 25.964 kb on - strand, within EX31_RS16715 at 26.177 kb on + strand, within EX31_RS16715 at 26.292 kb on + strand, within EX31_RS16715 at 26.292 kb on + strand, within EX31_RS16715 at 26.298 kb on - strand, within EX31_RS16715
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 23,829 + EX31_RS16700 0.76 -1.0 23,829 + EX31_RS16700 0.76 +0.8 23,830 - EX31_RS16700 0.76 -1.6 23,830 - EX31_RS16700 0.76 +0.0 23,830 - EX31_RS16700 0.76 +0.8 23,830 - EX31_RS16700 0.76 +0.4 23,831 + EX31_RS16700 0.76 +1.1 23,831 + EX31_RS16700 0.76 -0.8 23,831 + EX31_RS16700 0.76 -1.0 23,831 + EX31_RS16700 0.76 +0.4 23,831 + EX31_RS16700 0.76 +0.1 23,831 + EX31_RS16700 0.76 +0.7 23,832 - EX31_RS16700 0.76 -1.2 23,832 - EX31_RS16700 0.76 -0.2 23,832 - EX31_RS16700 0.76 +0.2 23,832 - EX31_RS16700 0.76 -1.1 23,832 - EX31_RS16700 0.76 +0.0 23,832 - EX31_RS16700 0.76 +0.8 23,832 - EX31_RS16700 0.76 -0.0 23,851 - EX31_RS16700 0.78 +1.3 23,851 - EX31_RS16700 0.78 +0.6 23,854 - EX31_RS16700 0.79 +0.9 23,901 - EX31_RS16700 0.84 -0.5 23,904 + EX31_RS16700 0.84 -0.9 23,905 - EX31_RS16700 0.84 -0.5 23,905 - EX31_RS16700 0.84 -0.9 23,950 - EX31_RS16700 0.89 -2.5 23,950 - EX31_RS16700 0.89 -0.5 23,950 - EX31_RS16700 0.89 -0.2 24,073 + +0.3 24,074 - -0.7 24,129 - +0.1 24,171 - EX31_RS16705 0.13 -1.1 24,341 + EX31_RS16705 0.37 -3.1 24,366 - EX31_RS16705 0.41 +0.6 24,456 + EX31_RS16705 0.54 +0.4 24,457 - EX31_RS16705 0.54 +0.0 24,458 + EX31_RS16705 0.54 -0.2 24,518 - EX31_RS16705 0.62 -0.3 24,540 - EX31_RS16705 0.65 +0.3 24,618 - EX31_RS16705 0.76 +0.2 24,618 - EX31_RS16705 0.76 +0.8 24,620 + EX31_RS16705 0.77 -0.7 24,652 - EX31_RS16705 0.81 +0.1 24,652 - EX31_RS16705 0.81 -2.8 24,706 - EX31_RS16705 0.89 -2.7 24,778 + -1.4 24,907 + EX31_RS16710 0.19 -2.5 24,907 + EX31_RS16710 0.19 +0.3 24,924 + EX31_RS16710 0.22 -1.7 25,005 + EX31_RS16710 0.34 -0.4 25,006 - EX31_RS16710 0.35 -0.3 25,006 - EX31_RS16710 0.35 -1.7 25,006 - EX31_RS16710 0.35 -0.9 25,189 - EX31_RS16710 0.63 -1.6 25,223 - EX31_RS16710 0.68 +0.9 25,232 - EX31_RS16710 0.69 +0.9 25,264 + EX31_RS16710 0.74 +0.3 25,268 - EX31_RS16710 0.75 -0.7 25,268 - EX31_RS16710 0.75 -0.7 25,268 - EX31_RS16710 0.75 -0.9 25,326 + EX31_RS16710 0.84 -1.2 25,348 + EX31_RS16710 0.87 -0.5 25,367 + -0.4 25,368 - -1.6 25,390 + +0.4 25,414 + -1.5 25,544 + +0.3 25,545 - +0.2 25,607 - EX31_RS16715 0.16 +0.6 25,607 - EX31_RS16715 0.16 +0.4 25,650 + EX31_RS16715 0.20 +0.4 25,651 - EX31_RS16715 0.20 +1.5 25,768 + EX31_RS16715 0.30 -1.8 25,768 + EX31_RS16715 0.30 +0.1 25,798 + EX31_RS16715 0.33 -0.5 25,856 - EX31_RS16715 0.38 -1.5 25,856 - EX31_RS16715 0.38 +0.0 25,856 - EX31_RS16715 0.38 +0.3 25,856 - EX31_RS16715 0.38 -0.4 25,961 - EX31_RS16715 0.48 +0.5 25,964 - EX31_RS16715 0.48 -0.7 25,964 - EX31_RS16715 0.48 +0.0 26,177 + EX31_RS16715 0.68 -0.4 26,292 + EX31_RS16715 0.78 +1.1 26,292 + EX31_RS16715 0.78 -2.5 26,298 - EX31_RS16715 0.79 -1.7
Or see this region's nucleotide sequence