Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS14395 and EX31_RS14400 are separated by 30 nucleotides EX31_RS14400 and EX31_RS14405 overlap by 1 nucleotides EX31_RS14405 and EX31_RS14410 are separated by 2 nucleotides
EX31_RS14395: EX31_RS14395 - ADP-glyceromanno-heptose 6-epimerase, at 60,812 to 61,744
_RS14395
EX31_RS14400: EX31_RS14400 - ADP-heptose--LPS heptosyltransferase RfaF, at 61,775 to 62,824
_RS14400
EX31_RS14405: EX31_RS14405 - lipopolysaccharide heptosyltransferase RfaC, at 62,824 to 63,807
_RS14405
EX31_RS14410: EX31_RS14410 - glycosyltransferase family 9 protein, at 63,810 to 64,907
_RS14410
Position (kb) 61
62
63 Strain fitness (log2 ratio) -2
-1
0
1 at 61.905 kb on + strand, within EX31_RS14400 at 61.905 kb on + strand, within EX31_RS14400 at 61.905 kb on + strand, within EX31_RS14400 at 61.926 kb on + strand, within EX31_RS14400 at 61.926 kb on + strand, within EX31_RS14400 at 61.927 kb on - strand, within EX31_RS14400 at 61.927 kb on - strand, within EX31_RS14400 at 62.015 kb on + strand, within EX31_RS14400 at 62.015 kb on + strand, within EX31_RS14400 at 62.015 kb on + strand, within EX31_RS14400 at 62.178 kb on - strand, within EX31_RS14400 at 62.253 kb on + strand, within EX31_RS14400 at 62.284 kb on + strand, within EX31_RS14400 at 62.306 kb on - strand, within EX31_RS14400 at 62.372 kb on + strand, within EX31_RS14400 at 62.372 kb on + strand, within EX31_RS14400 at 62.575 kb on + strand, within EX31_RS14400 at 62.688 kb on + strand, within EX31_RS14400 at 62.688 kb on + strand, within EX31_RS14400 at 62.688 kb on + strand, within EX31_RS14400 at 62.689 kb on - strand, within EX31_RS14400 at 62.689 kb on - strand, within EX31_RS14400 at 62.710 kb on + strand, within EX31_RS14400 at 62.711 kb on - strand, within EX31_RS14400 at 62.755 kb on - strand at 62.761 kb on + strand at 63.171 kb on + strand, within EX31_RS14405 at 63.206 kb on - strand, within EX31_RS14405 at 63.310 kb on + strand, within EX31_RS14405 at 63.310 kb on + strand, within EX31_RS14405 at 63.310 kb on + strand, within EX31_RS14405 at 63.315 kb on + strand, within EX31_RS14405 at 63.743 kb on + strand at 63.743 kb on + strand at 63.816 kb on + strand at 63.816 kb on + strand at 63.816 kb on + strand at 63.816 kb on + strand at 63.816 kb on + strand at 63.816 kb on + strand at 63.816 kb on + strand at 63.816 kb on + strand at 63.817 kb on - strand at 63.817 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 61,905 + EX31_RS14400 0.12 -2.0 61,905 + EX31_RS14400 0.12 -0.9 61,905 + EX31_RS14400 0.12 -1.8 61,926 + EX31_RS14400 0.14 -1.9 61,926 + EX31_RS14400 0.14 -2.6 61,927 - EX31_RS14400 0.14 -2.1 61,927 - EX31_RS14400 0.14 -1.5 62,015 + EX31_RS14400 0.23 -0.5 62,015 + EX31_RS14400 0.23 -0.7 62,015 + EX31_RS14400 0.23 +1.2 62,178 - EX31_RS14400 0.38 -0.5 62,253 + EX31_RS14400 0.46 -1.7 62,284 + EX31_RS14400 0.48 -2.3 62,306 - EX31_RS14400 0.51 +0.5 62,372 + EX31_RS14400 0.57 -2.2 62,372 + EX31_RS14400 0.57 -0.9 62,575 + EX31_RS14400 0.76 +1.0 62,688 + EX31_RS14400 0.87 +0.1 62,688 + EX31_RS14400 0.87 +1.5 62,688 + EX31_RS14400 0.87 -0.2 62,689 - EX31_RS14400 0.87 -0.7 62,689 - EX31_RS14400 0.87 +0.3 62,710 + EX31_RS14400 0.89 -0.1 62,711 - EX31_RS14400 0.89 -1.7 62,755 - -0.2 62,761 + -1.8 63,171 + EX31_RS14405 0.35 -0.7 63,206 - EX31_RS14405 0.39 -0.8 63,310 + EX31_RS14405 0.49 -2.2 63,310 + EX31_RS14405 0.49 -1.5 63,310 + EX31_RS14405 0.49 -1.7 63,315 + EX31_RS14405 0.50 -2.0 63,743 + +0.3 63,743 + -0.5 63,816 + +0.4 63,816 + -0.9 63,816 + -1.4 63,816 + -0.6 63,816 + -0.8 63,816 + -1.8 63,816 + -0.7 63,816 + -1.0 63,817 - -1.0 63,817 - -0.4
Or see this region's nucleotide sequence