Strain Fitness in Rahnella sp. WP5 around EX31_RS14230

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14225 and EX31_RS14230 are separated by 203 nucleotidesEX31_RS14230 and EX31_RS14235 are separated by 99 nucleotides EX31_RS14225: EX31_RS14225 - primosomal protein N', at 25,688 to 27,883 _RS14225 EX31_RS14230: EX31_RS14230 - DNA-binding transcriptional regulator CytR, at 28,087 to 29,115 _RS14230 EX31_RS14235: EX31_RS14235 - cell division protein FtsN, at 29,215 to 30,156 _RS14235 Position (kb) 28 29 30Strain fitness (log2 ratio) -2 -1 0 1at 27.908 kb on - strandat 27.958 kb on + strandat 27.959 kb on - strandat 27.968 kb on + strandat 27.968 kb on + strandat 27.968 kb on + strandat 27.968 kb on + strandat 27.969 kb on - strandat 27.969 kb on - strandat 27.972 kb on + strandat 27.972 kb on + strandat 27.973 kb on - strandat 27.973 kb on - strandat 27.997 kb on + strandat 27.997 kb on + strandat 27.997 kb on + strandat 28.012 kb on + strandat 28.012 kb on + strandat 28.012 kb on + strandat 28.012 kb on + strandat 28.013 kb on - strandat 28.013 kb on - strandat 28.175 kb on + strandat 28.175 kb on + strandat 28.278 kb on + strand, within EX31_RS14230at 28.278 kb on + strand, within EX31_RS14230at 28.279 kb on - strand, within EX31_RS14230at 28.293 kb on + strand, within EX31_RS14230at 28.293 kb on + strand, within EX31_RS14230at 28.293 kb on + strand, within EX31_RS14230at 28.447 kb on - strand, within EX31_RS14230at 28.447 kb on - strand, within EX31_RS14230at 28.487 kb on + strand, within EX31_RS14230at 28.487 kb on + strand, within EX31_RS14230at 28.488 kb on - strand, within EX31_RS14230at 28.488 kb on - strand, within EX31_RS14230at 28.488 kb on - strand, within EX31_RS14230at 28.543 kb on - strand, within EX31_RS14230at 28.618 kb on + strand, within EX31_RS14230at 28.618 kb on + strand, within EX31_RS14230at 28.618 kb on + strand, within EX31_RS14230at 28.618 kb on + strand, within EX31_RS14230at 28.619 kb on - strand, within EX31_RS14230at 28.619 kb on - strand, within EX31_RS14230at 28.619 kb on - strand, within EX31_RS14230at 28.644 kb on + strand, within EX31_RS14230at 28.644 kb on + strand, within EX31_RS14230at 28.645 kb on - strand, within EX31_RS14230at 28.671 kb on + strand, within EX31_RS14230at 28.671 kb on + strand, within EX31_RS14230at 28.671 kb on + strand, within EX31_RS14230at 28.671 kb on + strand, within EX31_RS14230at 28.671 kb on + strand, within EX31_RS14230at 28.671 kb on + strand, within EX31_RS14230at 28.671 kb on + strand, within EX31_RS14230at 28.671 kb on + strand, within EX31_RS14230at 28.671 kb on + strand, within EX31_RS14230at 28.671 kb on + strand, within EX31_RS14230at 28.672 kb on - strand, within EX31_RS14230at 28.672 kb on - strand, within EX31_RS14230at 28.672 kb on - strand, within EX31_RS14230at 28.672 kb on - strand, within EX31_RS14230at 28.672 kb on - strand, within EX31_RS14230at 28.672 kb on - strand, within EX31_RS14230at 28.702 kb on + strand, within EX31_RS14230at 28.702 kb on + strand, within EX31_RS14230at 28.702 kb on + strand, within EX31_RS14230at 28.702 kb on + strand, within EX31_RS14230at 28.702 kb on + strand, within EX31_RS14230at 28.703 kb on - strand, within EX31_RS14230at 28.703 kb on - strand, within EX31_RS14230at 28.703 kb on - strand, within EX31_RS14230at 28.703 kb on - strand, within EX31_RS14230at 28.703 kb on - strand, within EX31_RS14230at 28.771 kb on + strand, within EX31_RS14230at 28.772 kb on - strand, within EX31_RS14230at 28.772 kb on - strand, within EX31_RS14230at 28.948 kb on + strand, within EX31_RS14230at 29.012 kb on + strand, within EX31_RS14230at 29.013 kb on - strandat 29.013 kb on - strandat 29.013 kb on - strandat 29.015 kb on + strandat 29.015 kb on + strandat 29.015 kb on + strandat 29.015 kb on + strandat 29.015 kb on + strandat 29.016 kb on - strandat 29.016 kb on - strandat 29.016 kb on - strandat 29.016 kb on - strandat 29.018 kb on + strandat 29.018 kb on + strandat 29.018 kb on + strandat 29.018 kb on + strandat 29.018 kb on + strandat 29.018 kb on + strandat 29.018 kb on + strandat 29.018 kb on + strandat 29.019 kb on - strandat 29.019 kb on - strandat 29.019 kb on - strandat 29.019 kb on - strandat 29.019 kb on - strandat 29.019 kb on - strandat 29.031 kb on - strandat 29.031 kb on - strandat 29.031 kb on - strandat 29.031 kb on - strandat 29.070 kb on + strandat 29.071 kb on - strandat 29.125 kb on + strandat 29.125 kb on + strandat 29.125 kb on + strandat 29.125 kb on + strandat 29.126 kb on - strandat 29.143 kb on + strandat 29.144 kb on - strandat 29.170 kb on + strandat 29.632 kb on + strand, within EX31_RS14235at 29.633 kb on - strand, within EX31_RS14235at 29.633 kb on - strand, within EX31_RS14235at 29.633 kb on - strand, within EX31_RS14235at 29.635 kb on - strand, within EX31_RS14235at 29.670 kb on + strand, within EX31_RS14235at 29.670 kb on + strand, within EX31_RS14235at 29.671 kb on - strand, within EX31_RS14235at 29.704 kb on + strand, within EX31_RS14235at 29.704 kb on + strand, within EX31_RS14235at 29.705 kb on - strand, within EX31_RS14235at 29.705 kb on - strand, within EX31_RS14235at 29.758 kb on + strand, within EX31_RS14235at 29.758 kb on + strand, within EX31_RS14235at 29.758 kb on + strand, within EX31_RS14235at 29.758 kb on + strand, within EX31_RS14235at 29.758 kb on + strand, within EX31_RS14235at 29.758 kb on + strand, within EX31_RS14235at 29.758 kb on + strand, within EX31_RS14235at 29.758 kb on + strand, within EX31_RS14235at 29.758 kb on + strand, within EX31_RS14235at 29.758 kb on + strand, within EX31_RS14235at 29.758 kb on + strand, within EX31_RS14235at 29.758 kb on + strand, within EX31_RS14235at 29.758 kb on + strand, within EX31_RS14235at 29.758 kb on + strand, within EX31_RS14235at 29.758 kb on + strand, within EX31_RS14235at 29.759 kb on - strand, within EX31_RS14235at 29.759 kb on - strand, within EX31_RS14235at 29.759 kb on - strand, within EX31_RS14235at 29.759 kb on - strand, within EX31_RS14235at 29.759 kb on - strand, within EX31_RS14235at 29.759 kb on - strand, within EX31_RS14235at 29.759 kb on - strand, within EX31_RS14235at 29.759 kb on - strand, within EX31_RS14235at 29.759 kb on - strand, within EX31_RS14235at 29.759 kb on - strand, within EX31_RS14235at 29.759 kb on - strand, within EX31_RS14235at 29.759 kb on - strand, within EX31_RS14235at 29.759 kb on - strand, within EX31_RS14235at 29.759 kb on - strand, within EX31_RS14235at 29.759 kb on - strand, within EX31_RS14235at 29.759 kb on - strand, within EX31_RS14235at 29.760 kb on + strand, within EX31_RS14235at 29.760 kb on + strand, within EX31_RS14235at 29.781 kb on - strand, within EX31_RS14235at 29.781 kb on - strand, within EX31_RS14235at 30.067 kb on + strandat 30.067 kb on + strandat 30.067 kb on + strandat 30.067 kb on + strandat 30.068 kb on - strandat 30.068 kb on - strandat 30.099 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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27,908 - +0.6
27,958 + -0.6
27,959 - +0.3
27,968 + +0.1
27,968 + +0.3
27,968 + -0.1
27,968 + -0.0
27,969 - -0.2
27,969 - +0.2
27,972 + +0.4
27,972 + -0.9
27,973 - +1.1
27,973 - +0.2
27,997 + -0.5
27,997 + -0.2
27,997 + +0.2
28,012 + +0.4
28,012 + +0.1
28,012 + +0.1
28,012 + +0.9
28,013 - +0.2
28,013 - -0.3
28,175 + -0.3
28,175 + -0.8
28,278 + EX31_RS14230 0.19 +0.1
28,278 + EX31_RS14230 0.19 +0.4
28,279 - EX31_RS14230 0.19 +0.7
28,293 + EX31_RS14230 0.20 +1.3
28,293 + EX31_RS14230 0.20 +0.9
28,293 + EX31_RS14230 0.20 +0.5
28,447 - EX31_RS14230 0.35 +0.2
28,447 - EX31_RS14230 0.35 +0.2
28,487 + EX31_RS14230 0.39 +0.1
28,487 + EX31_RS14230 0.39 +0.1
28,488 - EX31_RS14230 0.39 +0.2
28,488 - EX31_RS14230 0.39 +0.6
28,488 - EX31_RS14230 0.39 +0.2
28,543 - EX31_RS14230 0.44 +0.5
28,618 + EX31_RS14230 0.52 -1.5
28,618 + EX31_RS14230 0.52 +0.0
28,618 + EX31_RS14230 0.52 -0.3
28,618 + EX31_RS14230 0.52 -0.1
28,619 - EX31_RS14230 0.52 +0.7
28,619 - EX31_RS14230 0.52 +0.3
28,619 - EX31_RS14230 0.52 +0.1
28,644 + EX31_RS14230 0.54 -0.3
28,644 + EX31_RS14230 0.54 -0.5
28,645 - EX31_RS14230 0.54 +0.9
28,671 + EX31_RS14230 0.57 -0.1
28,671 + EX31_RS14230 0.57 +0.3
28,671 + EX31_RS14230 0.57 -0.7
28,671 + EX31_RS14230 0.57 +0.4
28,671 + EX31_RS14230 0.57 +0.1
28,671 + EX31_RS14230 0.57 -1.5
28,671 + EX31_RS14230 0.57 +0.2
28,671 + EX31_RS14230 0.57 +0.2
28,671 + EX31_RS14230 0.57 +0.1
28,671 + EX31_RS14230 0.57 -0.1
28,672 - EX31_RS14230 0.57 -0.3
28,672 - EX31_RS14230 0.57 +0.6
28,672 - EX31_RS14230 0.57 -0.7
28,672 - EX31_RS14230 0.57 -0.4
28,672 - EX31_RS14230 0.57 +0.3
28,672 - EX31_RS14230 0.57 +0.1
28,702 + EX31_RS14230 0.60 +0.5
28,702 + EX31_RS14230 0.60 +0.7
28,702 + EX31_RS14230 0.60 +0.3
28,702 + EX31_RS14230 0.60 -0.7
28,702 + EX31_RS14230 0.60 +0.7
28,703 - EX31_RS14230 0.60 +0.4
28,703 - EX31_RS14230 0.60 +0.2
28,703 - EX31_RS14230 0.60 +0.1
28,703 - EX31_RS14230 0.60 +0.8
28,703 - EX31_RS14230 0.60 +1.3
28,771 + EX31_RS14230 0.66 +0.4
28,772 - EX31_RS14230 0.67 +0.5
28,772 - EX31_RS14230 0.67 -0.0
28,948 + EX31_RS14230 0.84 +0.2
29,012 + EX31_RS14230 0.90 +0.7
29,013 - +0.1
29,013 - -0.2
29,013 - +0.1
29,015 + +0.8
29,015 + +0.6
29,015 + -0.1
29,015 + +0.1
29,015 + +0.1
29,016 - -0.3
29,016 - +0.9
29,016 - -0.0
29,016 - -0.4
29,018 + -0.1
29,018 + +0.2
29,018 + +0.4
29,018 + +0.2
29,018 + -0.3
29,018 + +0.5
29,018 + +0.5
29,018 + +0.1
29,019 - +0.7
29,019 - -0.1
29,019 - -0.1
29,019 - -0.8
29,019 - +0.4
29,019 - -0.1
29,031 - -0.2
29,031 - +0.9
29,031 - +0.2
29,031 - +1.0
29,070 + +0.6
29,071 - +0.7
29,125 + +0.5
29,125 + -1.4
29,125 + +0.1
29,125 + +0.1
29,126 - +0.0
29,143 + +0.7
29,144 - -0.2
29,170 + -0.0
29,632 + EX31_RS14235 0.44 -1.4
29,633 - EX31_RS14235 0.44 -0.5
29,633 - EX31_RS14235 0.44 -0.5
29,633 - EX31_RS14235 0.44 +0.7
29,635 - EX31_RS14235 0.45 -0.6
29,670 + EX31_RS14235 0.48 +0.3
29,670 + EX31_RS14235 0.48 -0.3
29,671 - EX31_RS14235 0.48 -0.3
29,704 + EX31_RS14235 0.52 -1.0
29,704 + EX31_RS14235 0.52 +0.4
29,705 - EX31_RS14235 0.52 +0.8
29,705 - EX31_RS14235 0.52 -0.3
29,758 + EX31_RS14235 0.58 -0.2
29,758 + EX31_RS14235 0.58 -1.0
29,758 + EX31_RS14235 0.58 +0.6
29,758 + EX31_RS14235 0.58 +0.1
29,758 + EX31_RS14235 0.58 +0.1
29,758 + EX31_RS14235 0.58 +0.4
29,758 + EX31_RS14235 0.58 -0.5
29,758 + EX31_RS14235 0.58 +0.1
29,758 + EX31_RS14235 0.58 -0.1
29,758 + EX31_RS14235 0.58 -0.1
29,758 + EX31_RS14235 0.58 -0.2
29,758 + EX31_RS14235 0.58 +0.5
29,758 + EX31_RS14235 0.58 -0.3
29,758 + EX31_RS14235 0.58 -0.9
29,758 + EX31_RS14235 0.58 -0.6
29,759 - EX31_RS14235 0.58 +0.6
29,759 - EX31_RS14235 0.58 -0.3
29,759 - EX31_RS14235 0.58 -1.0
29,759 - EX31_RS14235 0.58 -0.2
29,759 - EX31_RS14235 0.58 +0.1
29,759 - EX31_RS14235 0.58 +0.8
29,759 - EX31_RS14235 0.58 +0.4
29,759 - EX31_RS14235 0.58 +0.1
29,759 - EX31_RS14235 0.58 +0.1
29,759 - EX31_RS14235 0.58 +0.1
29,759 - EX31_RS14235 0.58 -0.6
29,759 - EX31_RS14235 0.58 -0.4
29,759 - EX31_RS14235 0.58 +0.2
29,759 - EX31_RS14235 0.58 +0.3
29,759 - EX31_RS14235 0.58 -0.6
29,759 - EX31_RS14235 0.58 -0.7
29,760 + EX31_RS14235 0.58 +0.1
29,760 + EX31_RS14235 0.58 -0.1
29,781 - EX31_RS14235 0.60 -0.2
29,781 - EX31_RS14235 0.60 -0.3
30,067 + -2.0
30,067 + +0.3
30,067 + -0.5
30,067 + +1.1
30,068 - -1.0
30,068 - +0.3
30,099 - +1.3

Or see this region's nucleotide sequence