Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11500 and EX31_RS11505 are separated by 123 nucleotides EX31_RS11505 and EX31_RS11510 overlap by 4 nucleotides EX31_RS11510 and EX31_RS11515 are separated by 613 nucleotides
EX31_RS11500: EX31_RS11500 - glycosyltransferase family 2 protein, at 237,152 to 237,985
_RS11500
EX31_RS11505: EX31_RS11505 - dTDP-4-dehydrorhamnose reductase, at 238,109 to 238,981
_RS11505
EX31_RS11510: EX31_RS11510 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 238,978 to 239,514
_RS11510
EX31_RS11515: EX31_RS11515 - dTDP-glucose 4,6-dehydratase, at 240,128 to 241,192
_RS11515
Position (kb) 238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 238.067 kb on - strand at 238.096 kb on - strand at 238.111 kb on - strand at 238.256 kb on - strand, within EX31_RS11505 at 238.369 kb on - strand, within EX31_RS11505 at 238.904 kb on + strand at 239.005 kb on - strand at 239.005 kb on - strand at 239.030 kb on - strand at 239.030 kb on - strand at 239.030 kb on - strand at 239.106 kb on - strand, within EX31_RS11510 at 239.109 kb on - strand, within EX31_RS11510 at 239.109 kb on - strand, within EX31_RS11510 at 239.122 kb on - strand, within EX31_RS11510 at 239.122 kb on - strand, within EX31_RS11510 at 239.197 kb on - strand, within EX31_RS11510 at 239.214 kb on - strand, within EX31_RS11510 at 239.214 kb on - strand, within EX31_RS11510 at 239.214 kb on - strand, within EX31_RS11510 at 239.214 kb on - strand, within EX31_RS11510 at 239.216 kb on - strand, within EX31_RS11510 at 239.216 kb on - strand, within EX31_RS11510 at 239.216 kb on - strand, within EX31_RS11510 at 239.216 kb on - strand, within EX31_RS11510 at 239.216 kb on - strand, within EX31_RS11510 at 239.216 kb on - strand, within EX31_RS11510 at 239.216 kb on - strand, within EX31_RS11510 at 239.216 kb on - strand, within EX31_RS11510 at 239.216 kb on - strand, within EX31_RS11510 at 239.216 kb on - strand, within EX31_RS11510 at 239.276 kb on - strand, within EX31_RS11510 at 239.317 kb on - strand, within EX31_RS11510 at 239.317 kb on - strand, within EX31_RS11510 at 239.521 kb on - strand at 239.567 kb on - strand at 239.568 kb on + strand at 239.569 kb on - strand at 239.605 kb on - strand at 239.605 kb on - strand at 239.656 kb on - strand at 239.656 kb on - strand at 239.706 kb on - strand at 239.706 kb on - strand at 239.706 kb on - strand at 239.706 kb on - strand at 239.712 kb on - strand at 239.714 kb on + strand at 239.715 kb on - strand at 239.716 kb on + strand at 239.717 kb on - strand at 239.730 kb on + strand at 239.730 kb on + strand at 239.731 kb on - strand at 239.731 kb on - strand at 239.755 kb on - strand at 239.755 kb on - strand at 239.755 kb on - strand at 239.755 kb on - strand at 239.864 kb on + strand at 239.864 kb on + strand at 239.864 kb on + strand at 239.864 kb on + strand at 239.864 kb on + strand at 239.865 kb on - strand at 239.865 kb on - strand at 239.867 kb on + strand at 239.872 kb on + strand at 239.872 kb on + strand at 239.872 kb on + strand at 239.872 kb on + strand at 239.872 kb on + strand at 239.873 kb on - strand at 239.873 kb on - strand at 239.873 kb on - strand at 239.949 kb on + strand at 239.949 kb on + strand at 239.949 kb on + strand at 239.949 kb on + strand at 239.951 kb on + strand at 239.951 kb on + strand at 239.951 kb on + strand at 239.951 kb on + strand at 239.951 kb on + strand at 239.956 kb on + strand at 239.964 kb on + strand at 239.964 kb on + strand at 239.965 kb on - strand at 239.966 kb on + strand at 239.966 kb on + strand at 239.966 kb on + strand at 239.966 kb on + strand at 239.967 kb on - strand at 239.967 kb on - strand at 239.979 kb on + strand at 239.980 kb on - strand at 239.983 kb on + strand at 240.011 kb on + strand at 240.012 kb on - strand at 240.013 kb on + strand at 240.013 kb on + strand at 240.013 kb on + strand at 240.023 kb on + strand at 240.024 kb on - strand at 240.028 kb on + strand at 240.028 kb on + strand at 240.029 kb on - strand at 240.044 kb on + strand at 240.044 kb on + strand at 240.052 kb on + strand at 240.108 kb on + strand at 240.119 kb on + strand at 240.119 kb on + strand at 240.123 kb on + strand at 240.123 kb on + strand at 240.123 kb on + strand at 240.123 kb on + strand at 240.123 kb on + strand at 240.123 kb on + strand at 240.125 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 238,067 - -0.4 238,096 - -0.7 238,111 - +1.0 238,256 - EX31_RS11505 0.17 +0.3 238,369 - EX31_RS11505 0.30 -0.4 238,904 + +0.1 239,005 - -2.0 239,005 - +0.8 239,030 - -0.9 239,030 - -1.2 239,030 - -0.1 239,106 - EX31_RS11510 0.24 -2.4 239,109 - EX31_RS11510 0.24 -2.1 239,109 - EX31_RS11510 0.24 -0.5 239,122 - EX31_RS11510 0.27 +0.3 239,122 - EX31_RS11510 0.27 +0.0 239,197 - EX31_RS11510 0.41 -2.5 239,214 - EX31_RS11510 0.44 -2.1 239,214 - EX31_RS11510 0.44 +0.2 239,214 - EX31_RS11510 0.44 -2.1 239,214 - EX31_RS11510 0.44 -0.1 239,216 - EX31_RS11510 0.44 -1.4 239,216 - EX31_RS11510 0.44 +0.3 239,216 - EX31_RS11510 0.44 +0.7 239,216 - EX31_RS11510 0.44 -0.8 239,216 - EX31_RS11510 0.44 -0.5 239,216 - EX31_RS11510 0.44 -0.7 239,216 - EX31_RS11510 0.44 -0.7 239,216 - EX31_RS11510 0.44 -0.9 239,216 - EX31_RS11510 0.44 -0.9 239,216 - EX31_RS11510 0.44 +0.3 239,276 - EX31_RS11510 0.55 -0.6 239,317 - EX31_RS11510 0.63 -0.3 239,317 - EX31_RS11510 0.63 -0.2 239,521 - -0.1 239,567 - +0.2 239,568 + -1.2 239,569 - -1.1 239,605 - -0.1 239,605 - +0.4 239,656 - +0.2 239,656 - +0.1 239,706 - +0.1 239,706 - -0.7 239,706 - -0.1 239,706 - +0.5 239,712 - +0.5 239,714 + -0.1 239,715 - +0.3 239,716 + -0.4 239,717 - -0.5 239,730 + -0.4 239,730 + -3.3 239,731 - -0.0 239,731 - -0.1 239,755 - -0.2 239,755 - +0.2 239,755 - +0.5 239,755 - -0.0 239,864 + +1.1 239,864 + -1.1 239,864 + -0.1 239,864 + +0.3 239,864 + +0.3 239,865 - +0.9 239,865 - +0.2 239,867 + +0.1 239,872 + +0.6 239,872 + +0.2 239,872 + -0.3 239,872 + +0.2 239,872 + -1.1 239,873 - -0.1 239,873 - -0.6 239,873 - -0.7 239,949 + -0.3 239,949 + -1.8 239,949 + +0.1 239,949 + +0.4 239,951 + -0.2 239,951 + -0.5 239,951 + -0.7 239,951 + -1.0 239,951 + +0.5 239,956 + -1.6 239,964 + +0.1 239,964 + -0.9 239,965 - +0.1 239,966 + -0.1 239,966 + +0.4 239,966 + -0.5 239,966 + -0.4 239,967 - -0.0 239,967 - -0.9 239,979 + +0.0 239,980 - +0.2 239,983 + -1.0 240,011 + +0.2 240,012 - -0.5 240,013 + +0.5 240,013 + +1.2 240,013 + +0.8 240,023 + -0.4 240,024 - -0.2 240,028 + -0.3 240,028 + +0.2 240,029 - -1.1 240,044 + +0.7 240,044 + +0.3 240,052 + -0.2 240,108 + +0.6 240,119 + -0.0 240,119 + -1.7 240,123 + -2.6 240,123 + -0.2 240,123 + -1.6 240,123 + -0.6 240,123 + -1.4 240,123 + -0.2 240,125 + -0.7
Or see this region's nucleotide sequence