Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10085 and EX31_RS10090 are separated by 201 nucleotides EX31_RS10090 and EX31_RS10095 are separated by 9 nucleotides
EX31_RS10085: EX31_RS10085 - DNA-binding transcriptional regulator H-NS, at 227,199 to 227,606
_RS10085
EX31_RS10090: EX31_RS10090 - NAD-dependent epimerase, at 227,808 to 228,815
_RS10090
EX31_RS10095: EX31_RS10095 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 228,825 to 230,168
_RS10095
Position (kb) 227
228
229 Strain fitness (log2 ratio) -2
-1
0
1
2 at 226.816 kb on + strand at 226.916 kb on + strand at 226.916 kb on + strand at 226.916 kb on + strand at 226.917 kb on - strand at 226.917 kb on - strand at 226.917 kb on - strand at 226.917 kb on - strand at 226.917 kb on - strand at 226.921 kb on + strand at 226.922 kb on - strand at 226.922 kb on - strand at 227.024 kb on - strand at 227.038 kb on - strand at 227.062 kb on - strand at 227.062 kb on - strand at 227.551 kb on + strand, within EX31_RS10085 at 227.604 kb on + strand at 227.635 kb on + strand at 227.664 kb on + strand at 227.670 kb on + strand at 227.745 kb on - strand at 228.002 kb on - strand, within EX31_RS10090 at 228.039 kb on - strand, within EX31_RS10090 at 228.039 kb on - strand, within EX31_RS10090 at 228.039 kb on - strand, within EX31_RS10090 at 228.048 kb on - strand, within EX31_RS10090 at 228.048 kb on - strand, within EX31_RS10090 at 228.271 kb on - strand, within EX31_RS10090 at 228.306 kb on - strand, within EX31_RS10090 at 228.465 kb on - strand, within EX31_RS10090 at 228.642 kb on - strand, within EX31_RS10090 at 228.707 kb on - strand, within EX31_RS10090 at 228.773 kb on - strand at 229.106 kb on - strand, within EX31_RS10095
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 226,816 + +1.2 226,916 + -1.7 226,916 + +0.9 226,916 + -0.2 226,917 - -0.1 226,917 - +0.9 226,917 - -1.1 226,917 - -1.0 226,917 - +0.3 226,921 + +0.1 226,922 - +0.1 226,922 - +0.5 227,024 - -0.4 227,038 - -0.2 227,062 - -2.1 227,062 - -0.1 227,551 + EX31_RS10085 0.86 +2.4 227,604 + -0.1 227,635 + +0.7 227,664 + -0.5 227,670 + +0.1 227,745 - +0.5 228,002 - EX31_RS10090 0.19 +1.0 228,039 - EX31_RS10090 0.23 +0.1 228,039 - EX31_RS10090 0.23 -0.8 228,039 - EX31_RS10090 0.23 +0.0 228,048 - EX31_RS10090 0.24 -0.1 228,048 - EX31_RS10090 0.24 -1.0 228,271 - EX31_RS10090 0.46 -2.0 228,306 - EX31_RS10090 0.49 -2.4 228,465 - EX31_RS10090 0.65 +1.3 228,642 - EX31_RS10090 0.83 +0.8 228,707 - EX31_RS10090 0.89 -1.2 228,773 - +0.9 229,106 - EX31_RS10095 0.21 +0.6
Or see this region's nucleotide sequence