Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09895 and EX31_RS09900 are separated by 463 nucleotides EX31_RS09900 and EX31_RS09905 are separated by 114 nucleotides EX31_RS09905 and EX31_RS09910 are separated by 360 nucleotides
EX31_RS09895: EX31_RS09895 - type I DNA topoisomerase, at 187,016 to 189,613
_RS09895
EX31_RS09900: EX31_RS09900 - YciN family protein, at 190,077 to 190,328
_RS09900
EX31_RS09905: EX31_RS09905 - protease SohB, at 190,443 to 191,486
_RS09905
EX31_RS09910: EX31_RS09910 - YciK family oxidoreductase, at 191,847 to 192,608
_RS09910
Position (kb) 190
191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 189.667 kb on - strand at 189.697 kb on - strand at 189.699 kb on - strand at 189.792 kb on - strand at 189.836 kb on - strand at 189.889 kb on + strand at 189.889 kb on + strand at 189.890 kb on - strand at 189.890 kb on - strand at 189.890 kb on - strand at 189.915 kb on + strand at 189.916 kb on - strand at 189.916 kb on - strand at 189.916 kb on - strand at 189.978 kb on - strand at 190.045 kb on - strand at 190.045 kb on - strand at 190.057 kb on + strand at 190.057 kb on + strand at 190.057 kb on + strand at 190.057 kb on + strand at 190.057 kb on + strand at 190.057 kb on + strand at 190.058 kb on - strand at 190.058 kb on - strand at 190.058 kb on - strand at 190.069 kb on + strand at 190.073 kb on + strand at 190.073 kb on + strand at 190.073 kb on + strand at 190.088 kb on + strand at 190.088 kb on + strand at 190.100 kb on + strand at 190.155 kb on + strand, within EX31_RS09900 at 190.155 kb on + strand, within EX31_RS09900 at 190.155 kb on + strand, within EX31_RS09900 at 190.155 kb on + strand, within EX31_RS09900 at 190.156 kb on - strand, within EX31_RS09900 at 190.156 kb on - strand, within EX31_RS09900 at 190.271 kb on + strand, within EX31_RS09900 at 190.271 kb on + strand, within EX31_RS09900 at 190.271 kb on + strand, within EX31_RS09900 at 190.272 kb on - strand, within EX31_RS09900 at 190.272 kb on - strand, within EX31_RS09900 at 190.274 kb on + strand, within EX31_RS09900 at 190.274 kb on + strand, within EX31_RS09900 at 190.274 kb on + strand, within EX31_RS09900 at 190.274 kb on + strand, within EX31_RS09900 at 190.274 kb on + strand, within EX31_RS09900 at 190.274 kb on + strand, within EX31_RS09900 at 190.275 kb on - strand, within EX31_RS09900 at 190.343 kb on + strand at 190.343 kb on + strand at 190.346 kb on + strand at 190.346 kb on + strand at 190.346 kb on + strand at 190.346 kb on + strand at 190.347 kb on - strand at 190.353 kb on - strand at 190.354 kb on + strand at 190.354 kb on + strand at 190.354 kb on + strand at 190.354 kb on + strand at 190.354 kb on + strand at 190.354 kb on + strand at 190.354 kb on + strand at 190.354 kb on + strand at 190.355 kb on - strand at 190.355 kb on - strand at 190.379 kb on + strand at 190.393 kb on - strand at 190.421 kb on + strand at 190.422 kb on - strand at 190.444 kb on + strand at 190.444 kb on + strand at 190.444 kb on + strand at 190.471 kb on - strand at 190.471 kb on - strand at 190.563 kb on + strand, within EX31_RS09905 at 190.564 kb on - strand, within EX31_RS09905 at 190.775 kb on + strand, within EX31_RS09905 at 190.799 kb on + strand, within EX31_RS09905 at 190.800 kb on - strand, within EX31_RS09905 at 190.806 kb on - strand, within EX31_RS09905 at 190.833 kb on - strand, within EX31_RS09905 at 190.974 kb on - strand, within EX31_RS09905 at 191.179 kb on - strand, within EX31_RS09905 at 191.182 kb on + strand, within EX31_RS09905 at 191.182 kb on + strand, within EX31_RS09905 at 191.183 kb on - strand, within EX31_RS09905 at 191.183 kb on - strand, within EX31_RS09905 at 191.183 kb on - strand, within EX31_RS09905 at 191.461 kb on - strand at 191.467 kb on + strand at 191.478 kb on + strand at 191.479 kb on - strand at 191.479 kb on - strand at 191.491 kb on - strand at 191.509 kb on + strand at 191.513 kb on - strand at 191.524 kb on - strand at 191.536 kb on - strand at 191.545 kb on - strand at 191.686 kb on + strand at 191.686 kb on + strand at 191.686 kb on + strand at 191.688 kb on + strand at 191.688 kb on + strand at 191.688 kb on + strand at 191.689 kb on - strand at 191.754 kb on + strand at 191.754 kb on + strand at 191.754 kb on + strand at 191.780 kb on - strand at 191.834 kb on - strand at 191.861 kb on + strand at 191.940 kb on + strand, within EX31_RS09910 at 191.940 kb on + strand, within EX31_RS09910 at 191.940 kb on + strand, within EX31_RS09910 at 191.940 kb on + strand, within EX31_RS09910 at 191.940 kb on + strand, within EX31_RS09910 at 191.940 kb on + strand, within EX31_RS09910 at 191.988 kb on - strand, within EX31_RS09910 at 192.023 kb on + strand, within EX31_RS09910 at 192.023 kb on + strand, within EX31_RS09910 at 192.023 kb on + strand, within EX31_RS09910 at 192.045 kb on + strand, within EX31_RS09910 at 192.046 kb on - strand, within EX31_RS09910 at 192.182 kb on + strand, within EX31_RS09910 at 192.182 kb on + strand, within EX31_RS09910 at 192.233 kb on + strand, within EX31_RS09910 at 192.369 kb on - strand, within EX31_RS09910 at 192.395 kb on + strand, within EX31_RS09910 at 192.395 kb on + strand, within EX31_RS09910 at 192.395 kb on + strand, within EX31_RS09910 at 192.395 kb on + strand, within EX31_RS09910 at 192.395 kb on + strand, within EX31_RS09910 at 192.395 kb on + strand, within EX31_RS09910 at 192.395 kb on + strand, within EX31_RS09910 at 192.395 kb on + strand, within EX31_RS09910 at 192.395 kb on + strand, within EX31_RS09910 at 192.395 kb on + strand, within EX31_RS09910 at 192.395 kb on + strand, within EX31_RS09910 at 192.395 kb on + strand, within EX31_RS09910 at 192.395 kb on + strand, within EX31_RS09910 at 192.396 kb on - strand, within EX31_RS09910 at 192.396 kb on - strand, within EX31_RS09910 at 192.396 kb on - strand, within EX31_RS09910 at 192.396 kb on - strand, within EX31_RS09910 at 192.396 kb on - strand, within EX31_RS09910 at 192.396 kb on - strand, within EX31_RS09910 at 192.485 kb on + strand, within EX31_RS09910 at 192.485 kb on + strand, within EX31_RS09910
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 189,667 - -0.6 189,697 - -0.2 189,699 - -0.1 189,792 - +0.6 189,836 - -1.1 189,889 + +1.0 189,889 + -0.7 189,890 - -0.1 189,890 - -2.0 189,890 - +0.3 189,915 + -0.8 189,916 - +0.4 189,916 - -0.1 189,916 - -0.0 189,978 - +0.4 190,045 - +0.8 190,045 - -0.2 190,057 + -0.2 190,057 + -1.1 190,057 + +0.6 190,057 + +0.7 190,057 + +0.2 190,057 + -0.5 190,058 - -0.8 190,058 - -1.3 190,058 - -1.8 190,069 + +0.4 190,073 + +0.9 190,073 + -0.4 190,073 + -0.0 190,088 + -0.1 190,088 + +0.8 190,100 + +0.3 190,155 + EX31_RS09900 0.31 +0.6 190,155 + EX31_RS09900 0.31 -0.1 190,155 + EX31_RS09900 0.31 -0.0 190,155 + EX31_RS09900 0.31 -1.1 190,156 - EX31_RS09900 0.31 -0.8 190,156 - EX31_RS09900 0.31 +0.1 190,271 + EX31_RS09900 0.77 -0.4 190,271 + EX31_RS09900 0.77 +0.3 190,271 + EX31_RS09900 0.77 -0.2 190,272 - EX31_RS09900 0.77 +0.5 190,272 - EX31_RS09900 0.77 -0.9 190,274 + EX31_RS09900 0.78 +1.2 190,274 + EX31_RS09900 0.78 +0.5 190,274 + EX31_RS09900 0.78 +0.2 190,274 + EX31_RS09900 0.78 -0.2 190,274 + EX31_RS09900 0.78 +1.5 190,274 + EX31_RS09900 0.78 -0.4 190,275 - EX31_RS09900 0.79 -1.4 190,343 + +0.5 190,343 + +0.0 190,346 + -1.2 190,346 + +0.3 190,346 + +0.2 190,346 + +0.0 190,347 - -1.4 190,353 - +1.4 190,354 + +0.4 190,354 + +1.2 190,354 + -0.6 190,354 + -1.5 190,354 + -0.1 190,354 + +1.4 190,354 + -1.3 190,354 + -0.5 190,355 - -0.1 190,355 - -0.8 190,379 + +0.2 190,393 - +0.3 190,421 + +1.1 190,422 - -0.1 190,444 + +0.7 190,444 + -0.4 190,444 + +0.7 190,471 - +1.7 190,471 - -0.0 190,563 + EX31_RS09905 0.11 +0.1 190,564 - EX31_RS09905 0.12 -0.7 190,775 + EX31_RS09905 0.32 -2.4 190,799 + EX31_RS09905 0.34 +0.0 190,800 - EX31_RS09905 0.34 -3.1 190,806 - EX31_RS09905 0.35 -0.4 190,833 - EX31_RS09905 0.37 -0.1 190,974 - EX31_RS09905 0.51 +0.9 191,179 - EX31_RS09905 0.70 -0.5 191,182 + EX31_RS09905 0.71 +0.1 191,182 + EX31_RS09905 0.71 -0.8 191,183 - EX31_RS09905 0.71 -0.9 191,183 - EX31_RS09905 0.71 -1.1 191,183 - EX31_RS09905 0.71 -0.6 191,461 - +0.1 191,467 + +0.3 191,478 + -0.8 191,479 - +0.1 191,479 - -0.1 191,491 - +0.2 191,509 + +1.2 191,513 - -0.6 191,524 - +0.5 191,536 - -0.2 191,545 - +0.2 191,686 + +0.2 191,686 + -0.4 191,686 + +0.7 191,688 + -0.6 191,688 + +0.6 191,688 + -0.1 191,689 - +1.4 191,754 + -1.0 191,754 + +0.4 191,754 + +0.3 191,780 - -0.0 191,834 - +0.3 191,861 + -0.6 191,940 + EX31_RS09910 0.12 -0.1 191,940 + EX31_RS09910 0.12 -0.1 191,940 + EX31_RS09910 0.12 +0.6 191,940 + EX31_RS09910 0.12 -0.3 191,940 + EX31_RS09910 0.12 +0.2 191,940 + EX31_RS09910 0.12 -1.3 191,988 - EX31_RS09910 0.19 +1.0 192,023 + EX31_RS09910 0.23 +0.5 192,023 + EX31_RS09910 0.23 -0.1 192,023 + EX31_RS09910 0.23 +0.4 192,045 + EX31_RS09910 0.26 +0.3 192,046 - EX31_RS09910 0.26 +0.5 192,182 + EX31_RS09910 0.44 +0.2 192,182 + EX31_RS09910 0.44 +0.6 192,233 + EX31_RS09910 0.51 -2.2 192,369 - EX31_RS09910 0.69 -0.2 192,395 + EX31_RS09910 0.72 +1.0 192,395 + EX31_RS09910 0.72 -0.2 192,395 + EX31_RS09910 0.72 -0.8 192,395 + EX31_RS09910 0.72 +0.4 192,395 + EX31_RS09910 0.72 -0.2 192,395 + EX31_RS09910 0.72 -0.7 192,395 + EX31_RS09910 0.72 +0.2 192,395 + EX31_RS09910 0.72 -0.2 192,395 + EX31_RS09910 0.72 -0.1 192,395 + EX31_RS09910 0.72 -0.3 192,395 + EX31_RS09910 0.72 +0.2 192,395 + EX31_RS09910 0.72 +0.2 192,395 + EX31_RS09910 0.72 -0.4 192,396 - EX31_RS09910 0.72 -0.4 192,396 - EX31_RS09910 0.72 +0.8 192,396 - EX31_RS09910 0.72 +0.4 192,396 - EX31_RS09910 0.72 -2.5 192,396 - EX31_RS09910 0.72 -2.0 192,396 - EX31_RS09910 0.72 +0.2 192,485 + EX31_RS09910 0.84 +1.1 192,485 + EX31_RS09910 0.84 -0.6
Or see this region's nucleotide sequence