Strain Fitness in Rahnella sp. WP5 around EX31_RS09310

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09300 and EX31_RS09305 are separated by 96 nucleotidesEX31_RS09305 and EX31_RS09310 overlap by 4 nucleotidesEX31_RS09310 and EX31_RS09315 overlap by 1 nucleotides EX31_RS09300: EX31_RS09300 - hypothetical protein, at 60,767 to 61,006 _RS09300 EX31_RS09305: EX31_RS09305 - respiratory nitrate reductase subunit gamma, at 61,103 to 61,783 _RS09305 EX31_RS09310: EX31_RS09310 - nitrate reductase molybdenum cofactor assembly chaperone, at 61,780 to 62,502 _RS09310 EX31_RS09315: EX31_RS09315 - nitrate reductase subunit beta, at 62,502 to 64,037 _RS09315 Position (kb) 61 62 63Strain fitness (log2 ratio) -2 -1 0 1at 60.803 kb on + strand, within EX31_RS09300at 60.985 kb on + strandat 60.985 kb on + strandat 60.986 kb on - strandat 61.048 kb on - strandat 61.067 kb on - strandat 61.067 kb on - strandat 61.128 kb on + strandat 61.143 kb on + strandat 61.143 kb on + strandat 61.331 kb on - strand, within EX31_RS09305at 61.354 kb on + strand, within EX31_RS09305at 61.551 kb on + strand, within EX31_RS09305at 61.551 kb on + strand, within EX31_RS09305at 61.551 kb on + strand, within EX31_RS09305at 61.551 kb on + strand, within EX31_RS09305at 61.551 kb on + strand, within EX31_RS09305at 61.552 kb on - strand, within EX31_RS09305at 61.552 kb on - strand, within EX31_RS09305at 61.693 kb on - strand, within EX31_RS09305at 61.741 kb on - strandat 61.747 kb on - strandat 61.747 kb on - strandat 61.747 kb on - strandat 61.824 kb on - strandat 62.145 kb on - strand, within EX31_RS09310at 62.153 kb on + strand, within EX31_RS09310at 62.165 kb on + strand, within EX31_RS09310at 62.318 kb on + strand, within EX31_RS09310at 62.366 kb on + strand, within EX31_RS09310at 62.366 kb on + strand, within EX31_RS09310at 62.366 kb on + strand, within EX31_RS09310at 62.367 kb on - strand, within EX31_RS09310at 62.367 kb on - strand, within EX31_RS09310at 62.367 kb on - strand, within EX31_RS09310at 62.476 kb on + strandat 62.491 kb on + strandat 62.491 kb on + strandat 62.491 kb on + strandat 62.492 kb on - strandat 62.553 kb on - strandat 62.687 kb on - strand, within EX31_RS09315at 62.705 kb on - strand, within EX31_RS09315at 62.816 kb on + strand, within EX31_RS09315at 62.817 kb on - strand, within EX31_RS09315at 62.817 kb on - strand, within EX31_RS09315at 62.977 kb on + strand, within EX31_RS09315at 62.977 kb on + strand, within EX31_RS09315at 62.978 kb on - strand, within EX31_RS09315at 63.146 kb on + strand, within EX31_RS09315at 63.146 kb on + strand, within EX31_RS09315at 63.163 kb on + strand, within EX31_RS09315at 63.164 kb on - strand, within EX31_RS09315at 63.217 kb on + strand, within EX31_RS09315at 63.217 kb on + strand, within EX31_RS09315at 63.218 kb on - strand, within EX31_RS09315at 63.218 kb on - strand, within EX31_RS09315at 63.218 kb on - strand, within EX31_RS09315at 63.356 kb on - strand, within EX31_RS09315at 63.436 kb on + strand, within EX31_RS09315

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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60,803 + EX31_RS09300 0.15 +0.3
60,985 + +0.3
60,985 + +0.3
60,986 - +0.8
61,048 - +0.9
61,067 - +0.3
61,067 - +0.1
61,128 + +0.3
61,143 + +0.4
61,143 + -0.6
61,331 - EX31_RS09305 0.33 -2.3
61,354 + EX31_RS09305 0.37 -1.2
61,551 + EX31_RS09305 0.66 +0.2
61,551 + EX31_RS09305 0.66 +0.7
61,551 + EX31_RS09305 0.66 -0.5
61,551 + EX31_RS09305 0.66 -1.0
61,551 + EX31_RS09305 0.66 +0.5
61,552 - EX31_RS09305 0.66 +0.0
61,552 - EX31_RS09305 0.66 +0.2
61,693 - EX31_RS09305 0.87 -0.3
61,741 - +0.4
61,747 - +0.5
61,747 - +0.3
61,747 - +0.4
61,824 - -1.1
62,145 - EX31_RS09310 0.50 -1.0
62,153 + EX31_RS09310 0.52 +0.6
62,165 + EX31_RS09310 0.53 -1.2
62,318 + EX31_RS09310 0.74 -1.1
62,366 + EX31_RS09310 0.81 -0.9
62,366 + EX31_RS09310 0.81 -0.9
62,366 + EX31_RS09310 0.81 -1.5
62,367 - EX31_RS09310 0.81 +0.9
62,367 - EX31_RS09310 0.81 -0.5
62,367 - EX31_RS09310 0.81 +0.1
62,476 + -0.4
62,491 + +0.6
62,491 + +0.1
62,491 + -0.2
62,492 - +1.4
62,553 - +0.8
62,687 - EX31_RS09315 0.12 -1.4
62,705 - EX31_RS09315 0.13 +0.5
62,816 + EX31_RS09315 0.20 +0.2
62,817 - EX31_RS09315 0.21 -0.7
62,817 - EX31_RS09315 0.21 +0.3
62,977 + EX31_RS09315 0.31 +0.6
62,977 + EX31_RS09315 0.31 +0.0
62,978 - EX31_RS09315 0.31 -1.9
63,146 + EX31_RS09315 0.42 +0.3
63,146 + EX31_RS09315 0.42 +0.5
63,163 + EX31_RS09315 0.43 -1.2
63,164 - EX31_RS09315 0.43 -1.9
63,217 + EX31_RS09315 0.47 +0.1
63,217 + EX31_RS09315 0.47 +1.1
63,218 - EX31_RS09315 0.47 -0.0
63,218 - EX31_RS09315 0.47 +0.1
63,218 - EX31_RS09315 0.47 +1.0
63,356 - EX31_RS09315 0.56 -0.3
63,436 + EX31_RS09315 0.61 -0.3

Or see this region's nucleotide sequence