Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05775 and EX31_RS05780 are separated by 145 nucleotides EX31_RS05780 and EX31_RS05785 are separated by 204 nucleotides
EX31_RS05775: EX31_RS05775 - formate dehydrogenase-N subunit alpha, at 306,059 to 309,106
_RS05775
EX31_RS05780: EX31_RS05780 - formate dehydrogenase accessory sulfurtransferase FdhD, at 309,252 to 310,094
_RS05780
EX31_RS05785: EX31_RS05785 - superoxide dismutase [Mn], at 310,299 to 310,925
_RS05785
Position (kb) 309
310
311 Strain fitness (log2 ratio) -2
-1
0
1 at 308.292 kb on + strand, within EX31_RS05775 at 308.292 kb on + strand, within EX31_RS05775 at 308.292 kb on + strand, within EX31_RS05775 at 308.292 kb on + strand, within EX31_RS05775 at 308.347 kb on + strand, within EX31_RS05775 at 308.422 kb on + strand, within EX31_RS05775 at 308.422 kb on + strand, within EX31_RS05775 at 308.423 kb on - strand, within EX31_RS05775 at 308.427 kb on - strand, within EX31_RS05775 at 308.552 kb on - strand, within EX31_RS05775 at 308.597 kb on - strand, within EX31_RS05775 at 308.805 kb on + strand at 308.805 kb on + strand at 308.805 kb on + strand at 308.805 kb on + strand at 308.805 kb on + strand at 308.806 kb on - strand at 308.806 kb on - strand at 308.806 kb on - strand at 308.806 kb on - strand at 308.873 kb on + strand at 308.874 kb on - strand at 308.885 kb on - strand at 308.922 kb on + strand at 308.922 kb on + strand at 308.930 kb on + strand at 308.930 kb on + strand at 308.943 kb on - strand at 308.952 kb on + strand at 308.952 kb on + strand at 308.952 kb on + strand at 308.952 kb on + strand at 308.952 kb on + strand at 308.952 kb on + strand at 308.952 kb on + strand at 308.952 kb on + strand at 308.952 kb on + strand at 308.953 kb on - strand at 308.953 kb on - strand at 308.953 kb on - strand at 308.953 kb on - strand at 308.953 kb on - strand at 308.953 kb on - strand at 308.994 kb on + strand at 308.994 kb on + strand at 308.994 kb on + strand at 308.995 kb on - strand at 308.995 kb on - strand at 309.022 kb on + strand at 309.022 kb on + strand at 309.023 kb on - strand at 309.023 kb on - strand at 309.023 kb on - strand at 309.028 kb on + strand at 309.028 kb on + strand at 309.028 kb on + strand at 309.028 kb on + strand at 309.028 kb on + strand at 309.028 kb on + strand at 309.029 kb on - strand at 309.029 kb on - strand at 309.035 kb on + strand at 309.035 kb on + strand at 309.035 kb on + strand at 309.036 kb on - strand at 309.038 kb on + strand at 309.039 kb on - strand at 309.039 kb on - strand at 309.062 kb on - strand at 309.074 kb on + strand at 309.074 kb on + strand at 309.074 kb on + strand at 309.074 kb on + strand at 309.074 kb on + strand at 309.074 kb on + strand at 309.074 kb on + strand at 309.074 kb on + strand at 309.075 kb on - strand at 309.075 kb on - strand at 309.075 kb on - strand at 309.083 kb on + strand at 309.083 kb on + strand at 309.083 kb on + strand at 309.131 kb on + strand at 309.132 kb on - strand at 309.187 kb on + strand at 309.188 kb on - strand at 309.197 kb on + strand at 309.197 kb on + strand at 309.198 kb on - strand at 309.200 kb on - strand at 309.200 kb on - strand at 309.204 kb on - strand at 309.219 kb on + strand at 309.219 kb on + strand at 309.219 kb on + strand at 309.220 kb on - strand at 309.220 kb on - strand at 309.220 kb on - strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.238 kb on + strand at 309.239 kb on - strand at 309.239 kb on - strand at 309.239 kb on - strand at 309.405 kb on + strand, within EX31_RS05780 at 309.405 kb on + strand, within EX31_RS05780 at 309.405 kb on + strand, within EX31_RS05780 at 309.405 kb on + strand, within EX31_RS05780 at 309.405 kb on + strand, within EX31_RS05780 at 309.405 kb on + strand, within EX31_RS05780 at 309.405 kb on + strand, within EX31_RS05780 at 309.405 kb on + strand, within EX31_RS05780 at 309.406 kb on - strand, within EX31_RS05780 at 309.406 kb on - strand, within EX31_RS05780 at 309.406 kb on - strand, within EX31_RS05780 at 309.406 kb on - strand, within EX31_RS05780 at 309.406 kb on - strand, within EX31_RS05780 at 309.406 kb on - strand, within EX31_RS05780 at 309.491 kb on + strand, within EX31_RS05780 at 309.491 kb on + strand, within EX31_RS05780 at 309.509 kb on + strand, within EX31_RS05780 at 309.509 kb on + strand, within EX31_RS05780 at 309.509 kb on + strand, within EX31_RS05780 at 309.509 kb on + strand, within EX31_RS05780 at 309.510 kb on - strand, within EX31_RS05780 at 309.510 kb on - strand, within EX31_RS05780 at 309.510 kb on - strand, within EX31_RS05780 at 309.510 kb on - strand, within EX31_RS05780 at 309.565 kb on + strand, within EX31_RS05780 at 309.566 kb on - strand, within EX31_RS05780 at 309.652 kb on + strand, within EX31_RS05780 at 309.652 kb on + strand, within EX31_RS05780 at 309.662 kb on - strand, within EX31_RS05780 at 309.773 kb on + strand, within EX31_RS05780 at 309.773 kb on + strand, within EX31_RS05780 at 309.811 kb on + strand, within EX31_RS05780 at 309.811 kb on + strand, within EX31_RS05780 at 309.812 kb on - strand, within EX31_RS05780 at 309.812 kb on - strand, within EX31_RS05780 at 309.844 kb on + strand, within EX31_RS05780 at 309.844 kb on + strand, within EX31_RS05780 at 309.844 kb on + strand, within EX31_RS05780 at 309.844 kb on + strand, within EX31_RS05780 at 309.844 kb on + strand, within EX31_RS05780 at 309.844 kb on + strand, within EX31_RS05780 at 309.845 kb on - strand, within EX31_RS05780 at 309.845 kb on - strand, within EX31_RS05780 at 309.845 kb on - strand, within EX31_RS05780 at 309.845 kb on - strand, within EX31_RS05780 at 309.845 kb on - strand, within EX31_RS05780 at 309.845 kb on - strand, within EX31_RS05780 at 309.845 kb on - strand, within EX31_RS05780 at 309.910 kb on + strand, within EX31_RS05780 at 309.910 kb on + strand, within EX31_RS05780 at 309.911 kb on - strand, within EX31_RS05780 at 309.911 kb on - strand, within EX31_RS05780 at 310.068 kb on + strand at 310.068 kb on + strand at 310.068 kb on + strand at 310.068 kb on + strand at 310.068 kb on + strand at 310.068 kb on + strand at 310.068 kb on + strand at 310.068 kb on + strand at 310.068 kb on + strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.069 kb on - strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.070 kb on + strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.071 kb on - strand at 310.087 kb on + strand at 310.088 kb on - strand at 310.093 kb on - strand at 310.102 kb on + strand at 310.103 kb on - strand at 310.120 kb on - strand at 310.128 kb on + strand at 310.154 kb on + strand at 310.154 kb on + strand at 310.154 kb on + strand at 310.154 kb on + strand at 310.155 kb on - strand at 310.155 kb on - strand at 310.163 kb on + strand at 310.164 kb on - strand at 310.164 kb on - strand at 310.166 kb on - strand at 310.166 kb on - strand at 310.166 kb on - strand at 310.176 kb on + strand at 310.177 kb on - strand at 310.177 kb on - strand at 310.177 kb on - strand at 310.204 kb on + strand at 310.204 kb on + strand at 310.204 kb on + strand at 310.205 kb on - strand at 310.205 kb on - strand at 310.208 kb on + strand at 310.208 kb on + strand at 310.209 kb on - strand at 310.209 kb on - strand at 310.209 kb on - strand at 310.209 kb on - strand at 310.228 kb on + strand at 310.228 kb on + strand at 310.229 kb on - strand at 310.229 kb on - strand at 310.232 kb on + strand at 310.232 kb on + strand at 310.236 kb on + strand at 310.236 kb on + strand at 310.236 kb on + strand at 310.236 kb on + strand at 310.236 kb on + strand at 310.236 kb on + strand at 310.236 kb on + strand at 310.237 kb on - strand at 310.237 kb on - strand at 310.237 kb on - strand at 310.238 kb on + strand at 310.238 kb on + strand at 310.238 kb on + strand at 310.285 kb on - strand at 310.289 kb on + strand at 310.289 kb on + strand at 310.289 kb on + strand at 310.289 kb on + strand at 310.289 kb on + strand at 310.311 kb on + strand at 310.311 kb on + strand at 310.391 kb on + strand, within EX31_RS05785 at 310.392 kb on - strand, within EX31_RS05785 at 310.392 kb on - strand, within EX31_RS05785 at 310.407 kb on + strand, within EX31_RS05785 at 310.408 kb on - strand, within EX31_RS05785 at 310.733 kb on + strand, within EX31_RS05785 at 310.733 kb on + strand, within EX31_RS05785 at 310.733 kb on + strand, within EX31_RS05785 at 310.734 kb on - strand, within EX31_RS05785 at 310.824 kb on + strand, within EX31_RS05785 at 310.923 kb on + strand at 310.923 kb on + strand at 310.923 kb on + strand at 310.923 kb on + strand at 310.924 kb on - strand at 310.995 kb on + strand at 310.996 kb on - strand at 310.996 kb on - strand at 311.011 kb on - strand at 311.011 kb on - strand at 311.011 kb on - strand at 311.011 kb on - strand at 311.011 kb on - strand at 311.038 kb on + strand at 311.059 kb on + strand at 311.059 kb on + strand at 311.059 kb on + strand at 311.060 kb on - strand at 311.060 kb on - strand at 311.060 kb on - strand at 311.060 kb on - strand at 311.060 kb on - strand at 311.060 kb on - strand at 311.062 kb on + strand at 311.062 kb on + strand at 311.063 kb on - strand at 311.063 kb on - strand at 311.079 kb on - strand at 311.088 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 308,292 + EX31_RS05775 0.73 +0.1 308,292 + EX31_RS05775 0.73 -1.0 308,292 + EX31_RS05775 0.73 -0.5 308,292 + EX31_RS05775 0.73 +0.4 308,347 + EX31_RS05775 0.75 -0.1 308,422 + EX31_RS05775 0.78 -0.6 308,422 + EX31_RS05775 0.78 +0.3 308,423 - EX31_RS05775 0.78 -0.6 308,427 - EX31_RS05775 0.78 +0.5 308,552 - EX31_RS05775 0.82 +0.2 308,597 - EX31_RS05775 0.83 +0.5 308,805 + -0.0 308,805 + -1.3 308,805 + -1.0 308,805 + -0.1 308,805 + -0.0 308,806 - +0.3 308,806 - +0.8 308,806 - +0.0 308,806 - -0.9 308,873 + +0.2 308,874 - +0.2 308,885 - -0.3 308,922 + +0.0 308,922 + -0.1 308,930 + -1.0 308,930 + -0.9 308,943 - +0.1 308,952 + -0.5 308,952 + +0.7 308,952 + -2.0 308,952 + -0.1 308,952 + +0.6 308,952 + -0.1 308,952 + +0.4 308,952 + -0.0 308,952 + -0.3 308,953 - +0.5 308,953 - +0.4 308,953 - +0.4 308,953 - -0.2 308,953 - +0.8 308,953 - +0.3 308,994 + -0.1 308,994 + +0.2 308,994 + +0.1 308,995 - -0.7 308,995 - -0.4 309,022 + -1.2 309,022 + +0.3 309,023 - -0.3 309,023 - -0.1 309,023 - -0.0 309,028 + -0.6 309,028 + +0.2 309,028 + -0.4 309,028 + +0.5 309,028 + +0.3 309,028 + +0.1 309,029 - -0.2 309,029 - +0.9 309,035 + +0.2 309,035 + -0.9 309,035 + -0.4 309,036 - +0.5 309,038 + -0.1 309,039 - +0.5 309,039 - +0.5 309,062 - -0.4 309,074 + -0.2 309,074 + -0.2 309,074 + +0.3 309,074 + -0.2 309,074 + -0.7 309,074 + +0.3 309,074 + +0.0 309,074 + +0.5 309,075 - +0.3 309,075 - +0.1 309,075 - +0.2 309,083 + +0.1 309,083 + -0.1 309,083 + +0.4 309,131 + +0.3 309,132 - +0.3 309,187 + +0.2 309,188 - -0.0 309,197 + -0.4 309,197 + -0.5 309,198 - +0.5 309,200 - +0.5 309,200 - -2.0 309,204 - +0.1 309,219 + +0.1 309,219 + +0.4 309,219 + +0.9 309,220 - -0.3 309,220 - -0.1 309,220 - -0.4 309,238 + +0.1 309,238 + +0.6 309,238 + -0.4 309,238 + +0.3 309,238 + +0.4 309,238 + +0.4 309,238 + +0.4 309,238 + -0.0 309,238 + -0.1 309,238 + +1.2 309,239 - +0.5 309,239 - -1.9 309,239 - +0.2 309,405 + EX31_RS05780 0.18 +0.0 309,405 + EX31_RS05780 0.18 +0.2 309,405 + EX31_RS05780 0.18 +0.2 309,405 + EX31_RS05780 0.18 -0.3 309,405 + EX31_RS05780 0.18 +0.6 309,405 + EX31_RS05780 0.18 -0.3 309,405 + EX31_RS05780 0.18 +0.6 309,405 + EX31_RS05780 0.18 -0.1 309,406 - EX31_RS05780 0.18 +0.7 309,406 - EX31_RS05780 0.18 -0.3 309,406 - EX31_RS05780 0.18 +0.1 309,406 - EX31_RS05780 0.18 +0.2 309,406 - EX31_RS05780 0.18 +0.2 309,406 - EX31_RS05780 0.18 +0.2 309,491 + EX31_RS05780 0.28 +0.4 309,491 + EX31_RS05780 0.28 -0.3 309,509 + EX31_RS05780 0.30 -0.2 309,509 + EX31_RS05780 0.30 +0.2 309,509 + EX31_RS05780 0.30 +0.5 309,509 + EX31_RS05780 0.30 +0.6 309,510 - EX31_RS05780 0.31 +0.1 309,510 - EX31_RS05780 0.31 +0.7 309,510 - EX31_RS05780 0.31 -0.5 309,510 - EX31_RS05780 0.31 +1.6 309,565 + EX31_RS05780 0.37 +0.0 309,566 - EX31_RS05780 0.37 -0.2 309,652 + EX31_RS05780 0.47 +0.2 309,652 + EX31_RS05780 0.47 +0.6 309,662 - EX31_RS05780 0.49 +0.5 309,773 + EX31_RS05780 0.62 +0.3 309,773 + EX31_RS05780 0.62 +0.1 309,811 + EX31_RS05780 0.66 +0.0 309,811 + EX31_RS05780 0.66 +0.4 309,812 - EX31_RS05780 0.66 +0.3 309,812 - EX31_RS05780 0.66 -0.2 309,844 + EX31_RS05780 0.70 +0.5 309,844 + EX31_RS05780 0.70 -0.2 309,844 + EX31_RS05780 0.70 +0.0 309,844 + EX31_RS05780 0.70 +0.3 309,844 + EX31_RS05780 0.70 -0.3 309,844 + EX31_RS05780 0.70 +0.6 309,845 - EX31_RS05780 0.70 +0.3 309,845 - EX31_RS05780 0.70 -0.0 309,845 - EX31_RS05780 0.70 +0.4 309,845 - EX31_RS05780 0.70 +0.1 309,845 - EX31_RS05780 0.70 +0.9 309,845 - EX31_RS05780 0.70 +0.1 309,845 - EX31_RS05780 0.70 +0.2 309,910 + EX31_RS05780 0.78 +0.2 309,910 + EX31_RS05780 0.78 -0.4 309,911 - EX31_RS05780 0.78 -0.3 309,911 - EX31_RS05780 0.78 -0.3 310,068 + +0.4 310,068 + +0.1 310,068 + -0.0 310,068 + -0.5 310,068 + -0.2 310,068 + +0.4 310,068 + +0.1 310,068 + +0.3 310,068 + +0.1 310,069 - -0.8 310,069 - +0.2 310,069 - -0.2 310,069 - -0.3 310,069 - +0.7 310,069 - +0.5 310,069 - +0.7 310,069 - +0.4 310,069 - +0.2 310,069 - +0.4 310,069 - +0.8 310,069 - -0.4 310,069 - +1.0 310,069 - +0.3 310,069 - +0.7 310,069 - -0.7 310,070 + +0.3 310,070 + +0.2 310,070 + +0.9 310,070 + +1.7 310,070 + +0.1 310,070 + -1.0 310,070 + +1.0 310,070 + -0.1 310,070 + +0.2 310,071 - -0.6 310,071 - +0.3 310,071 - -0.4 310,071 - +0.4 310,071 - -0.1 310,071 - +1.5 310,071 - -0.2 310,071 - +0.1 310,071 - +0.1 310,071 - -0.7 310,071 - +0.2 310,071 - +0.4 310,071 - -1.3 310,071 - +0.3 310,071 - +0.2 310,071 - +0.3 310,087 + -0.2 310,088 - -0.2 310,093 - -0.0 310,102 + -0.2 310,103 - +0.5 310,120 - -0.1 310,128 + +0.3 310,154 + +0.1 310,154 + +0.2 310,154 + +0.4 310,154 + +0.3 310,155 - -0.0 310,155 - +0.2 310,163 + -0.1 310,164 - +0.7 310,164 - +0.5 310,166 - +0.1 310,166 - +0.3 310,166 - -0.4 310,176 + -0.2 310,177 - -0.2 310,177 - -0.1 310,177 - -0.3 310,204 + -0.1 310,204 + -0.3 310,204 + -0.8 310,205 - -0.4 310,205 - -0.3 310,208 + -0.9 310,208 + -0.3 310,209 - +0.1 310,209 - +0.2 310,209 - -0.8 310,209 - -0.1 310,228 + -0.2 310,228 + +0.1 310,229 - -0.1 310,229 - +0.0 310,232 + +0.4 310,232 + +0.5 310,236 + -0.2 310,236 + +0.0 310,236 + -0.0 310,236 + +0.4 310,236 + -0.2 310,236 + -0.6 310,236 + +0.4 310,237 - -0.4 310,237 - +0.3 310,237 - -0.1 310,238 + +0.4 310,238 + -0.1 310,238 + +0.1 310,285 - -0.0 310,289 + +0.1 310,289 + -0.1 310,289 + -0.0 310,289 + -0.1 310,289 + -0.1 310,311 + -0.2 310,311 + +0.4 310,391 + EX31_RS05785 0.15 +0.2 310,392 - EX31_RS05785 0.15 -0.1 310,392 - EX31_RS05785 0.15 -0.5 310,407 + EX31_RS05785 0.17 -0.2 310,408 - EX31_RS05785 0.17 -0.3 310,733 + EX31_RS05785 0.69 +1.1 310,733 + EX31_RS05785 0.69 +1.4 310,733 + EX31_RS05785 0.69 -0.1 310,734 - EX31_RS05785 0.69 +0.1 310,824 + EX31_RS05785 0.84 +0.1 310,923 + -0.0 310,923 + -0.1 310,923 + +0.6 310,923 + +0.3 310,924 - -0.3 310,995 + -1.0 310,996 - -0.5 310,996 - +0.1 311,011 - +0.2 311,011 - +0.2 311,011 - -0.7 311,011 - -0.1 311,011 - -0.2 311,038 + +0.5 311,059 + +0.3 311,059 + -0.0 311,059 + +0.3 311,060 - +0.1 311,060 - -0.3 311,060 - +0.1 311,060 - -0.0 311,060 - -0.2 311,060 - -0.2 311,062 + -0.6 311,062 + -0.8 311,063 - -0.1 311,063 - -0.0 311,079 - -0.7 311,088 + +0.9
Or see this region's nucleotide sequence