Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS04290 and EX31_RS04295 are separated by 288 nucleotides EX31_RS04295 and EX31_RS04300 are separated by 519 nucleotides EX31_RS04300 and EX31_RS04305 overlap by 23 nucleotides
EX31_RS04290: EX31_RS04290 - N-6 DNA methylase, at 386,849 to 388,909
_RS04290
EX31_RS04295: EX31_RS04295 - hypothetical protein, at 389,198 to 389,938
_RS04295
EX31_RS04300: EX31_RS04300 - hypothetical protein, at 390,458 to 390,895
_RS04300
EX31_RS04305: EX31_RS04305 - relaxase/mobilization nuclease domain-containing protein, at 390,873 to 392,132
_RS04305
Position (kb) 389
390 Strain fitness (log2 ratio) -2
-1
0
1 at 388.286 kb on + strand, within EX31_RS04290 at 388.623 kb on - strand, within EX31_RS04290 at 388.623 kb on - strand, within EX31_RS04290 at 388.624 kb on + strand, within EX31_RS04290 at 388.625 kb on - strand, within EX31_RS04290 at 388.625 kb on - strand, within EX31_RS04290 at 388.634 kb on - strand, within EX31_RS04290 at 388.715 kb on - strand at 388.715 kb on - strand at 388.715 kb on - strand at 388.715 kb on - strand at 388.715 kb on - strand at 388.717 kb on - strand at 388.752 kb on - strand at 388.857 kb on + strand at 388.858 kb on - strand at 388.858 kb on - strand at 388.858 kb on - strand at 388.872 kb on - strand at 388.896 kb on - strand at 388.920 kb on - strand at 388.927 kb on - strand at 388.932 kb on - strand at 389.006 kb on + strand at 389.006 kb on + strand at 389.006 kb on + strand at 389.006 kb on + strand at 389.007 kb on - strand at 389.007 kb on - strand at 389.027 kb on + strand at 389.027 kb on + strand at 389.028 kb on - strand at 389.028 kb on - strand at 389.033 kb on - strand at 389.048 kb on - strand at 389.060 kb on - strand at 389.096 kb on - strand at 389.109 kb on - strand at 389.202 kb on + strand at 389.579 kb on + strand, within EX31_RS04295 at 389.582 kb on - strand, within EX31_RS04295 at 389.621 kb on - strand, within EX31_RS04295 at 389.690 kb on + strand, within EX31_RS04295 at 389.691 kb on - strand, within EX31_RS04295 at 389.740 kb on - strand, within EX31_RS04295 at 389.889 kb on - strand at 389.959 kb on - strand at 389.990 kb on + strand at 390.015 kb on + strand at 390.016 kb on - strand at 390.020 kb on - strand at 390.144 kb on + strand at 390.188 kb on + strand at 390.248 kb on - strand at 390.387 kb on + strand at 390.387 kb on + strand at 390.487 kb on - strand at 390.520 kb on + strand, within EX31_RS04300 at 390.521 kb on - strand, within EX31_RS04300 at 390.550 kb on - strand, within EX31_RS04300 at 390.550 kb on - strand, within EX31_RS04300 at 390.550 kb on - strand, within EX31_RS04300 at 390.557 kb on + strand, within EX31_RS04300 at 390.576 kb on + strand, within EX31_RS04300 at 390.592 kb on - strand, within EX31_RS04300 at 390.592 kb on - strand, within EX31_RS04300 at 390.674 kb on - strand, within EX31_RS04300 at 390.674 kb on - strand, within EX31_RS04300 at 390.674 kb on - strand, within EX31_RS04300 at 390.675 kb on + strand, within EX31_RS04300 at 390.675 kb on + strand, within EX31_RS04300 at 390.685 kb on + strand, within EX31_RS04300 at 390.685 kb on + strand, within EX31_RS04300 at 390.686 kb on - strand, within EX31_RS04300 at 390.717 kb on + strand, within EX31_RS04300 at 390.748 kb on + strand, within EX31_RS04300 at 390.748 kb on + strand, within EX31_RS04300 at 390.748 kb on + strand, within EX31_RS04300 at 390.748 kb on + strand, within EX31_RS04300 at 390.748 kb on + strand, within EX31_RS04300 at 390.749 kb on - strand, within EX31_RS04300 at 390.749 kb on - strand, within EX31_RS04300 at 390.750 kb on + strand, within EX31_RS04300 at 390.750 kb on + strand, within EX31_RS04300 at 390.750 kb on + strand, within EX31_RS04300 at 390.750 kb on + strand, within EX31_RS04300 at 390.751 kb on - strand, within EX31_RS04300 at 390.751 kb on - strand, within EX31_RS04300 at 390.751 kb on - strand, within EX31_RS04300 at 390.751 kb on - strand, within EX31_RS04300 at 390.751 kb on - strand, within EX31_RS04300 at 390.757 kb on + strand, within EX31_RS04300 at 390.757 kb on + strand, within EX31_RS04300 at 390.758 kb on - strand, within EX31_RS04300 at 390.758 kb on - strand, within EX31_RS04300 at 390.769 kb on + strand, within EX31_RS04300 at 390.779 kb on - strand, within EX31_RS04300 at 390.837 kb on + strand, within EX31_RS04300 at 390.883 kb on + strand at 390.884 kb on - strand at 390.893 kb on + strand at 390.910 kb on + strand at 390.910 kb on + strand at 390.911 kb on - strand at 390.911 kb on - strand at 390.911 kb on - strand at 390.916 kb on + strand at 390.918 kb on + strand at 390.919 kb on - strand at 390.919 kb on - strand at 390.925 kb on + strand at 390.925 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 388,286 + EX31_RS04290 0.70 +0.5 388,623 - EX31_RS04290 0.86 -0.4 388,623 - EX31_RS04290 0.86 -0.5 388,624 + EX31_RS04290 0.86 +0.6 388,625 - EX31_RS04290 0.86 -0.9 388,625 - EX31_RS04290 0.86 -1.1 388,634 - EX31_RS04290 0.87 +0.0 388,715 - +0.5 388,715 - -0.4 388,715 - -0.1 388,715 - +0.7 388,715 - -0.6 388,717 - -0.3 388,752 - +0.6 388,857 + +0.3 388,858 - +0.6 388,858 - -0.1 388,858 - -0.4 388,872 - +0.5 388,896 - -1.4 388,920 - -0.6 388,927 - -2.0 388,932 - -0.5 389,006 + +0.3 389,006 + +0.4 389,006 + -0.1 389,006 + -0.5 389,007 - -0.2 389,007 - -0.2 389,027 + -0.7 389,027 + -0.4 389,028 - -1.2 389,028 - -0.8 389,033 - +0.5 389,048 - +0.6 389,060 - -1.1 389,096 - -0.6 389,109 - -1.0 389,202 + -2.3 389,579 + EX31_RS04295 0.51 +0.4 389,582 - EX31_RS04295 0.52 -0.2 389,621 - EX31_RS04295 0.57 -1.1 389,690 + EX31_RS04295 0.66 -0.6 389,691 - EX31_RS04295 0.67 -0.5 389,740 - EX31_RS04295 0.73 -1.4 389,889 - +0.1 389,959 - -0.9 389,990 + +0.5 390,015 + +0.2 390,016 - -0.6 390,020 - -0.3 390,144 + -0.0 390,188 + -0.4 390,248 - +0.8 390,387 + +0.1 390,387 + +0.0 390,487 - -0.6 390,520 + EX31_RS04300 0.14 -0.7 390,521 - EX31_RS04300 0.14 -0.4 390,550 - EX31_RS04300 0.21 +0.5 390,550 - EX31_RS04300 0.21 +0.4 390,550 - EX31_RS04300 0.21 -0.6 390,557 + EX31_RS04300 0.23 -0.3 390,576 + EX31_RS04300 0.27 -1.7 390,592 - EX31_RS04300 0.31 -0.8 390,592 - EX31_RS04300 0.31 -0.2 390,674 - EX31_RS04300 0.49 -0.2 390,674 - EX31_RS04300 0.49 -0.4 390,674 - EX31_RS04300 0.49 -1.1 390,675 + EX31_RS04300 0.50 +0.6 390,675 + EX31_RS04300 0.50 +0.6 390,685 + EX31_RS04300 0.52 -0.3 390,685 + EX31_RS04300 0.52 +0.1 390,686 - EX31_RS04300 0.52 -0.8 390,717 + EX31_RS04300 0.59 +0.1 390,748 + EX31_RS04300 0.66 +0.1 390,748 + EX31_RS04300 0.66 -0.6 390,748 + EX31_RS04300 0.66 +0.3 390,748 + EX31_RS04300 0.66 -0.9 390,748 + EX31_RS04300 0.66 -0.1 390,749 - EX31_RS04300 0.66 -0.5 390,749 - EX31_RS04300 0.66 -0.2 390,750 + EX31_RS04300 0.67 +0.2 390,750 + EX31_RS04300 0.67 +0.7 390,750 + EX31_RS04300 0.67 -0.2 390,750 + EX31_RS04300 0.67 -0.7 390,751 - EX31_RS04300 0.67 +0.6 390,751 - EX31_RS04300 0.67 +0.3 390,751 - EX31_RS04300 0.67 -0.2 390,751 - EX31_RS04300 0.67 -1.2 390,751 - EX31_RS04300 0.67 -0.3 390,757 + EX31_RS04300 0.68 -0.8 390,757 + EX31_RS04300 0.68 -1.2 390,758 - EX31_RS04300 0.68 -0.6 390,758 - EX31_RS04300 0.68 +0.1 390,769 + EX31_RS04300 0.71 -0.0 390,779 - EX31_RS04300 0.73 -0.9 390,837 + EX31_RS04300 0.87 +0.1 390,883 + +0.1 390,884 - +0.1 390,893 + +0.0 390,910 + +0.2 390,910 + +0.2 390,911 - +0.4 390,911 - +0.5 390,911 - -0.7 390,916 + +0.0 390,918 + -0.4 390,919 - -0.1 390,919 - -0.2 390,925 + -1.1 390,925 + +0.1
Or see this region's nucleotide sequence