Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02900 and EX31_RS02905 are separated by 15 nucleotides EX31_RS02905 and EX31_RS02910 are separated by 17 nucleotides
EX31_RS02900: EX31_RS02900 - glycosyltransferase, at 56,553 to 57,791
_RS02900
EX31_RS02905: EX31_RS02905 - right-handed parallel beta-helix repeat-containing protein, at 57,807 to 59,498
_RS02905
EX31_RS02910: EX31_RS02910 - hypothetical protein, at 59,516 to 60,754
_RS02910
Position (kb) 57
58
59
60 Strain fitness (log2 ratio) -2
-1
0
1 at 56.849 kb on + strand, within EX31_RS02900 at 56.901 kb on + strand, within EX31_RS02900 at 56.901 kb on + strand, within EX31_RS02900 at 56.901 kb on + strand, within EX31_RS02900 at 56.905 kb on + strand, within EX31_RS02900 at 57.066 kb on + strand, within EX31_RS02900 at 57.067 kb on - strand, within EX31_RS02900 at 57.111 kb on + strand, within EX31_RS02900 at 57.132 kb on - strand, within EX31_RS02900 at 57.198 kb on - strand, within EX31_RS02900 at 57.362 kb on + strand, within EX31_RS02900 at 57.423 kb on - strand, within EX31_RS02900 at 57.614 kb on - strand, within EX31_RS02900 at 57.661 kb on - strand, within EX31_RS02900 at 57.968 kb on - strand at 58.077 kb on - strand, within EX31_RS02905 at 58.080 kb on + strand, within EX31_RS02905 at 58.110 kb on - strand, within EX31_RS02905 at 58.166 kb on + strand, within EX31_RS02905 at 58.553 kb on + strand, within EX31_RS02905 at 58.652 kb on - strand, within EX31_RS02905 at 58.654 kb on - strand, within EX31_RS02905 at 58.678 kb on - strand, within EX31_RS02905 at 58.754 kb on - strand, within EX31_RS02905 at 58.806 kb on + strand, within EX31_RS02905 at 58.934 kb on + strand, within EX31_RS02905 at 58.937 kb on + strand, within EX31_RS02905 at 59.052 kb on + strand, within EX31_RS02905 at 59.136 kb on - strand, within EX31_RS02905 at 59.136 kb on - strand, within EX31_RS02905 at 59.138 kb on + strand, within EX31_RS02905 at 59.138 kb on + strand, within EX31_RS02905 at 59.226 kb on - strand, within EX31_RS02905 at 59.261 kb on + strand, within EX31_RS02905 at 59.315 kb on - strand, within EX31_RS02905 at 59.331 kb on + strand at 59.332 kb on - strand at 59.332 kb on - strand at 59.332 kb on - strand at 59.388 kb on + strand at 59.388 kb on + strand at 59.389 kb on - strand at 59.400 kb on - strand at 59.439 kb on + strand at 59.439 kb on + strand at 59.442 kb on + strand at 59.485 kb on - strand at 59.499 kb on - strand at 59.499 kb on - strand at 59.499 kb on - strand at 59.542 kb on + strand at 59.556 kb on - strand at 59.562 kb on - strand at 59.623 kb on + strand at 59.680 kb on - strand, within EX31_RS02910 at 59.769 kb on + strand, within EX31_RS02910 at 59.873 kb on + strand, within EX31_RS02910 at 59.895 kb on - strand, within EX31_RS02910 at 59.927 kb on - strand, within EX31_RS02910 at 59.967 kb on - strand, within EX31_RS02910 at 59.971 kb on + strand, within EX31_RS02910 at 60.020 kb on - strand, within EX31_RS02910 at 60.096 kb on - strand, within EX31_RS02910 at 60.157 kb on - strand, within EX31_RS02910 at 60.458 kb on - strand, within EX31_RS02910 at 60.467 kb on - strand, within EX31_RS02910 at 60.471 kb on + strand, within EX31_RS02910 at 60.471 kb on + strand, within EX31_RS02910
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 56,849 + EX31_RS02900 0.24 -0.5 56,901 + EX31_RS02900 0.28 -0.4 56,901 + EX31_RS02900 0.28 -0.5 56,901 + EX31_RS02900 0.28 -1.4 56,905 + EX31_RS02900 0.28 -0.3 57,066 + EX31_RS02900 0.41 +0.3 57,067 - EX31_RS02900 0.41 -0.1 57,111 + EX31_RS02900 0.45 -1.5 57,132 - EX31_RS02900 0.47 -1.1 57,198 - EX31_RS02900 0.52 -1.3 57,362 + EX31_RS02900 0.65 +0.5 57,423 - EX31_RS02900 0.70 -0.3 57,614 - EX31_RS02900 0.86 -0.2 57,661 - EX31_RS02900 0.89 -1.2 57,968 - +0.7 58,077 - EX31_RS02905 0.16 -1.0 58,080 + EX31_RS02905 0.16 -0.5 58,110 - EX31_RS02905 0.18 -0.1 58,166 + EX31_RS02905 0.21 -0.2 58,553 + EX31_RS02905 0.44 -1.0 58,652 - EX31_RS02905 0.50 -1.3 58,654 - EX31_RS02905 0.50 +0.1 58,678 - EX31_RS02905 0.51 +0.6 58,754 - EX31_RS02905 0.56 -0.9 58,806 + EX31_RS02905 0.59 +0.6 58,934 + EX31_RS02905 0.67 -0.2 58,937 + EX31_RS02905 0.67 -0.3 59,052 + EX31_RS02905 0.74 +0.5 59,136 - EX31_RS02905 0.79 -0.4 59,136 - EX31_RS02905 0.79 -0.2 59,138 + EX31_RS02905 0.79 +0.0 59,138 + EX31_RS02905 0.79 -0.4 59,226 - EX31_RS02905 0.84 +0.1 59,261 + EX31_RS02905 0.86 +0.3 59,315 - EX31_RS02905 0.89 -1.2 59,331 + -0.7 59,332 - +1.0 59,332 - +0.6 59,332 - -0.2 59,388 + -1.4 59,388 + -1.0 59,389 - -0.5 59,400 - +0.7 59,439 + -0.5 59,439 + -0.8 59,442 + +0.6 59,485 - +0.2 59,499 - +0.6 59,499 - +0.8 59,499 - -0.7 59,542 + +0.3 59,556 - -0.6 59,562 - +0.6 59,623 + -2.6 59,680 - EX31_RS02910 0.13 -0.0 59,769 + EX31_RS02910 0.20 -0.2 59,873 + EX31_RS02910 0.29 +0.4 59,895 - EX31_RS02910 0.31 +0.1 59,927 - EX31_RS02910 0.33 -1.3 59,967 - EX31_RS02910 0.36 -0.8 59,971 + EX31_RS02910 0.37 -1.1 60,020 - EX31_RS02910 0.41 +0.1 60,096 - EX31_RS02910 0.47 +0.2 60,157 - EX31_RS02910 0.52 -0.4 60,458 - EX31_RS02910 0.76 +0.2 60,467 - EX31_RS02910 0.77 +0.8 60,471 + EX31_RS02910 0.77 -0.4 60,471 + EX31_RS02910 0.77 -0.8
Or see this region's nucleotide sequence