Experiment: NL-CCM; low oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02895 and EX31_RS02900 are separated by 4 nucleotides EX31_RS02900 and EX31_RS02905 are separated by 15 nucleotides
EX31_RS02895: EX31_RS02895 - hypothetical protein, at 55,532 to 56,548
_RS02895
EX31_RS02900: EX31_RS02900 - glycosyltransferase, at 56,553 to 57,791
_RS02900
EX31_RS02905: EX31_RS02905 - right-handed parallel beta-helix repeat-containing protein, at 57,807 to 59,498
_RS02905
Position (kb) 56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 55.553 kb on - strand at 55.577 kb on + strand at 55.578 kb on - strand at 55.583 kb on - strand at 55.634 kb on + strand, within EX31_RS02895 at 55.635 kb on - strand, within EX31_RS02895 at 55.815 kb on + strand, within EX31_RS02895 at 55.835 kb on + strand, within EX31_RS02895 at 55.854 kb on + strand, within EX31_RS02895 at 55.860 kb on + strand, within EX31_RS02895 at 55.860 kb on + strand, within EX31_RS02895 at 55.860 kb on + strand, within EX31_RS02895 at 55.860 kb on + strand, within EX31_RS02895 at 55.860 kb on + strand, within EX31_RS02895 at 55.861 kb on - strand, within EX31_RS02895 at 55.861 kb on - strand, within EX31_RS02895 at 55.861 kb on - strand, within EX31_RS02895 at 55.861 kb on - strand, within EX31_RS02895 at 55.861 kb on - strand, within EX31_RS02895 at 55.862 kb on + strand, within EX31_RS02895 at 55.862 kb on + strand, within EX31_RS02895 at 55.862 kb on + strand, within EX31_RS02895 at 55.862 kb on + strand, within EX31_RS02895 at 55.863 kb on - strand, within EX31_RS02895 at 55.863 kb on - strand, within EX31_RS02895 at 55.863 kb on - strand, within EX31_RS02895 at 55.863 kb on - strand, within EX31_RS02895 at 55.863 kb on - strand, within EX31_RS02895 at 55.863 kb on - strand, within EX31_RS02895 at 55.863 kb on - strand, within EX31_RS02895 at 55.880 kb on - strand, within EX31_RS02895 at 55.880 kb on - strand, within EX31_RS02895 at 55.920 kb on + strand, within EX31_RS02895 at 55.981 kb on + strand, within EX31_RS02895 at 55.981 kb on + strand, within EX31_RS02895 at 55.982 kb on - strand, within EX31_RS02895 at 56.000 kb on + strand, within EX31_RS02895 at 56.000 kb on + strand, within EX31_RS02895 at 56.000 kb on + strand, within EX31_RS02895 at 56.001 kb on - strand, within EX31_RS02895 at 56.001 kb on - strand, within EX31_RS02895 at 56.192 kb on - strand, within EX31_RS02895 at 56.192 kb on - strand, within EX31_RS02895 at 56.192 kb on - strand, within EX31_RS02895 at 56.192 kb on - strand, within EX31_RS02895 at 56.215 kb on + strand, within EX31_RS02895 at 56.258 kb on - strand, within EX31_RS02895 at 56.382 kb on + strand, within EX31_RS02895 at 56.382 kb on + strand, within EX31_RS02895 at 56.383 kb on - strand, within EX31_RS02895 at 56.383 kb on - strand, within EX31_RS02895 at 56.383 kb on - strand, within EX31_RS02895 at 56.383 kb on - strand, within EX31_RS02895 at 56.413 kb on + strand, within EX31_RS02895 at 56.413 kb on + strand, within EX31_RS02895 at 56.414 kb on - strand, within EX31_RS02895 at 56.414 kb on - strand, within EX31_RS02895 at 56.414 kb on - strand, within EX31_RS02895 at 56.417 kb on - strand, within EX31_RS02895 at 56.531 kb on - strand at 56.564 kb on + strand at 56.569 kb on - strand at 56.589 kb on - strand at 56.592 kb on + strand at 56.652 kb on - strand at 56.689 kb on - strand, within EX31_RS02900 at 56.689 kb on - strand, within EX31_RS02900 at 56.762 kb on + strand, within EX31_RS02900 at 56.802 kb on + strand, within EX31_RS02900 at 56.803 kb on - strand, within EX31_RS02900 at 56.803 kb on - strand, within EX31_RS02900 at 56.803 kb on - strand, within EX31_RS02900 at 56.849 kb on + strand, within EX31_RS02900 at 56.901 kb on + strand, within EX31_RS02900 at 56.901 kb on + strand, within EX31_RS02900 at 56.901 kb on + strand, within EX31_RS02900 at 56.905 kb on + strand, within EX31_RS02900 at 57.066 kb on + strand, within EX31_RS02900 at 57.067 kb on - strand, within EX31_RS02900 at 57.111 kb on + strand, within EX31_RS02900 at 57.132 kb on - strand, within EX31_RS02900 at 57.198 kb on - strand, within EX31_RS02900 at 57.362 kb on + strand, within EX31_RS02900 at 57.423 kb on - strand, within EX31_RS02900 at 57.614 kb on - strand, within EX31_RS02900 at 57.661 kb on - strand, within EX31_RS02900 at 57.968 kb on - strand at 58.077 kb on - strand, within EX31_RS02905 at 58.080 kb on + strand, within EX31_RS02905 at 58.110 kb on - strand, within EX31_RS02905 at 58.166 kb on + strand, within EX31_RS02905 at 58.553 kb on + strand, within EX31_RS02905 at 58.652 kb on - strand, within EX31_RS02905 at 58.654 kb on - strand, within EX31_RS02905 at 58.678 kb on - strand, within EX31_RS02905 at 58.754 kb on - strand, within EX31_RS02905
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; low oxygen remove 55,553 - -0.5 55,577 + -1.6 55,578 - -0.8 55,583 - -0.1 55,634 + EX31_RS02895 0.10 -0.1 55,635 - EX31_RS02895 0.10 +0.5 55,815 + EX31_RS02895 0.28 -0.1 55,835 + EX31_RS02895 0.30 -1.0 55,854 + EX31_RS02895 0.32 +0.2 55,860 + EX31_RS02895 0.32 +0.6 55,860 + EX31_RS02895 0.32 -0.6 55,860 + EX31_RS02895 0.32 +0.3 55,860 + EX31_RS02895 0.32 +0.8 55,860 + EX31_RS02895 0.32 -0.9 55,861 - EX31_RS02895 0.32 +0.1 55,861 - EX31_RS02895 0.32 +0.4 55,861 - EX31_RS02895 0.32 +0.5 55,861 - EX31_RS02895 0.32 -0.1 55,861 - EX31_RS02895 0.32 -1.8 55,862 + EX31_RS02895 0.32 -0.4 55,862 + EX31_RS02895 0.32 +0.7 55,862 + EX31_RS02895 0.32 -0.3 55,862 + EX31_RS02895 0.32 +0.3 55,863 - EX31_RS02895 0.33 +0.0 55,863 - EX31_RS02895 0.33 -0.6 55,863 - EX31_RS02895 0.33 -0.5 55,863 - EX31_RS02895 0.33 -1.4 55,863 - EX31_RS02895 0.33 -3.2 55,863 - EX31_RS02895 0.33 +0.1 55,863 - EX31_RS02895 0.33 -0.1 55,880 - EX31_RS02895 0.34 -0.1 55,880 - EX31_RS02895 0.34 -0.2 55,920 + EX31_RS02895 0.38 -0.1 55,981 + EX31_RS02895 0.44 +1.0 55,981 + EX31_RS02895 0.44 -0.6 55,982 - EX31_RS02895 0.44 -0.3 56,000 + EX31_RS02895 0.46 -1.2 56,000 + EX31_RS02895 0.46 +0.6 56,000 + EX31_RS02895 0.46 -0.3 56,001 - EX31_RS02895 0.46 -0.4 56,001 - EX31_RS02895 0.46 +0.3 56,192 - EX31_RS02895 0.65 -0.7 56,192 - EX31_RS02895 0.65 -0.4 56,192 - EX31_RS02895 0.65 -1.4 56,192 - EX31_RS02895 0.65 -1.1 56,215 + EX31_RS02895 0.67 -0.4 56,258 - EX31_RS02895 0.71 +0.2 56,382 + EX31_RS02895 0.84 -0.9 56,382 + EX31_RS02895 0.84 +0.2 56,383 - EX31_RS02895 0.84 -0.1 56,383 - EX31_RS02895 0.84 +0.1 56,383 - EX31_RS02895 0.84 -0.1 56,383 - EX31_RS02895 0.84 -0.4 56,413 + EX31_RS02895 0.87 -0.9 56,413 + EX31_RS02895 0.87 -1.0 56,414 - EX31_RS02895 0.87 +1.1 56,414 - EX31_RS02895 0.87 +0.7 56,414 - EX31_RS02895 0.87 -1.3 56,417 - EX31_RS02895 0.87 -0.8 56,531 - +0.9 56,564 + -0.3 56,569 - -0.6 56,589 - -0.4 56,592 + +0.1 56,652 - -0.1 56,689 - EX31_RS02900 0.11 +0.2 56,689 - EX31_RS02900 0.11 -2.3 56,762 + EX31_RS02900 0.17 +0.0 56,802 + EX31_RS02900 0.20 +1.0 56,803 - EX31_RS02900 0.20 -1.5 56,803 - EX31_RS02900 0.20 -0.5 56,803 - EX31_RS02900 0.20 +0.4 56,849 + EX31_RS02900 0.24 -0.5 56,901 + EX31_RS02900 0.28 -0.4 56,901 + EX31_RS02900 0.28 -0.5 56,901 + EX31_RS02900 0.28 -1.4 56,905 + EX31_RS02900 0.28 -0.3 57,066 + EX31_RS02900 0.41 +0.3 57,067 - EX31_RS02900 0.41 -0.1 57,111 + EX31_RS02900 0.45 -1.5 57,132 - EX31_RS02900 0.47 -1.1 57,198 - EX31_RS02900 0.52 -1.3 57,362 + EX31_RS02900 0.65 +0.5 57,423 - EX31_RS02900 0.70 -0.3 57,614 - EX31_RS02900 0.86 -0.2 57,661 - EX31_RS02900 0.89 -1.2 57,968 - +0.7 58,077 - EX31_RS02905 0.16 -1.0 58,080 + EX31_RS02905 0.16 -0.5 58,110 - EX31_RS02905 0.18 -0.1 58,166 + EX31_RS02905 0.21 -0.2 58,553 + EX31_RS02905 0.44 -1.0 58,652 - EX31_RS02905 0.50 -1.3 58,654 - EX31_RS02905 0.50 +0.1 58,678 - EX31_RS02905 0.51 +0.6 58,754 - EX31_RS02905 0.56 -0.9
Or see this region's nucleotide sequence