Strain Fitness in Rahnella sp. WP5 around EX31_RS02790

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02785 and EX31_RS02790 overlap by 4 nucleotidesEX31_RS02790 and EX31_RS02795 are separated by 6 nucleotides EX31_RS02785: EX31_RS02785 - polysaccharide biosynthesis tyrosine autokinase, at 27,012 to 29,162 _RS02785 EX31_RS02790: EX31_RS02790 - low molecular weight phosphotyrosine protein phosphatase, at 29,159 to 29,608 _RS02790 EX31_RS02795: EX31_RS02795 - polysaccharide export protein, at 29,615 to 30,745 _RS02795 Position (kb) 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1at 28.160 kb on + strand, within EX31_RS02785at 28.163 kb on - strand, within EX31_RS02785at 28.202 kb on + strand, within EX31_RS02785at 28.392 kb on - strand, within EX31_RS02785at 28.416 kb on - strand, within EX31_RS02785at 28.463 kb on - strand, within EX31_RS02785at 28.466 kb on + strand, within EX31_RS02785at 28.467 kb on - strand, within EX31_RS02785at 28.568 kb on + strand, within EX31_RS02785at 28.577 kb on + strand, within EX31_RS02785at 28.587 kb on + strand, within EX31_RS02785at 28.588 kb on - strand, within EX31_RS02785at 28.588 kb on - strand, within EX31_RS02785at 28.626 kb on + strand, within EX31_RS02785at 28.652 kb on + strand, within EX31_RS02785at 28.653 kb on - strand, within EX31_RS02785at 28.653 kb on - strand, within EX31_RS02785at 28.653 kb on - strand, within EX31_RS02785at 28.653 kb on - strand, within EX31_RS02785at 28.653 kb on - strand, within EX31_RS02785at 28.672 kb on - strand, within EX31_RS02785at 28.706 kb on + strand, within EX31_RS02785at 28.707 kb on - strand, within EX31_RS02785at 28.708 kb on + strand, within EX31_RS02785at 28.708 kb on + strand, within EX31_RS02785at 28.708 kb on + strand, within EX31_RS02785at 28.709 kb on - strand, within EX31_RS02785at 28.709 kb on - strand, within EX31_RS02785at 28.709 kb on - strand, within EX31_RS02785at 28.709 kb on - strand, within EX31_RS02785at 28.709 kb on - strand, within EX31_RS02785at 28.709 kb on - strand, within EX31_RS02785at 28.746 kb on - strand, within EX31_RS02785at 28.788 kb on + strand, within EX31_RS02785at 28.789 kb on - strand, within EX31_RS02785at 28.818 kb on - strand, within EX31_RS02785at 28.847 kb on + strand, within EX31_RS02785at 28.881 kb on - strand, within EX31_RS02785at 28.937 kb on + strand, within EX31_RS02785at 28.938 kb on - strand, within EX31_RS02785at 28.980 kb on + strandat 28.981 kb on - strandat 29.023 kb on - strandat 29.023 kb on - strandat 29.051 kb on + strandat 29.051 kb on + strandat 29.226 kb on - strand, within EX31_RS02790at 29.228 kb on - strand, within EX31_RS02790at 29.245 kb on + strand, within EX31_RS02790at 29.302 kb on + strand, within EX31_RS02790at 29.348 kb on - strand, within EX31_RS02790at 29.348 kb on - strand, within EX31_RS02790at 29.510 kb on + strand, within EX31_RS02790at 29.567 kb on + strandat 29.567 kb on + strandat 29.567 kb on + strandat 29.567 kb on + strandat 29.568 kb on - strandat 29.569 kb on + strandat 29.570 kb on - strandat 29.570 kb on - strandat 29.570 kb on - strandat 29.570 kb on - strandat 29.570 kb on - strandat 29.570 kb on - strandat 29.599 kb on + strandat 29.599 kb on + strandat 29.600 kb on - strandat 29.604 kb on - strandat 29.728 kb on - strand, within EX31_RS02795at 29.735 kb on - strand, within EX31_RS02795at 29.802 kb on + strand, within EX31_RS02795at 29.803 kb on - strand, within EX31_RS02795at 29.825 kb on - strand, within EX31_RS02795at 29.855 kb on + strand, within EX31_RS02795at 29.855 kb on + strand, within EX31_RS02795at 29.856 kb on - strand, within EX31_RS02795at 29.900 kb on - strand, within EX31_RS02795at 29.900 kb on - strand, within EX31_RS02795at 29.943 kb on - strand, within EX31_RS02795at 29.943 kb on - strand, within EX31_RS02795at 30.007 kb on - strand, within EX31_RS02795at 30.013 kb on + strand, within EX31_RS02795at 30.014 kb on - strand, within EX31_RS02795at 30.046 kb on + strand, within EX31_RS02795at 30.046 kb on + strand, within EX31_RS02795at 30.047 kb on - strand, within EX31_RS02795at 30.063 kb on - strand, within EX31_RS02795at 30.098 kb on - strand, within EX31_RS02795at 30.138 kb on - strand, within EX31_RS02795at 30.154 kb on + strand, within EX31_RS02795at 30.155 kb on - strand, within EX31_RS02795at 30.194 kb on + strand, within EX31_RS02795at 30.194 kb on + strand, within EX31_RS02795at 30.195 kb on - strand, within EX31_RS02795at 30.228 kb on + strand, within EX31_RS02795at 30.228 kb on + strand, within EX31_RS02795at 30.228 kb on + strand, within EX31_RS02795at 30.228 kb on + strand, within EX31_RS02795at 30.229 kb on - strand, within EX31_RS02795at 30.229 kb on - strand, within EX31_RS02795at 30.229 kb on - strand, within EX31_RS02795at 30.229 kb on - strand, within EX31_RS02795at 30.229 kb on - strand, within EX31_RS02795at 30.229 kb on - strand, within EX31_RS02795at 30.283 kb on + strand, within EX31_RS02795at 30.284 kb on - strand, within EX31_RS02795at 30.284 kb on - strand, within EX31_RS02795at 30.284 kb on - strand, within EX31_RS02795at 30.284 kb on - strand, within EX31_RS02795at 30.284 kb on - strand, within EX31_RS02795at 30.285 kb on + strand, within EX31_RS02795at 30.285 kb on + strand, within EX31_RS02795at 30.286 kb on - strand, within EX31_RS02795at 30.286 kb on - strand, within EX31_RS02795at 30.286 kb on - strand, within EX31_RS02795at 30.307 kb on + strand, within EX31_RS02795at 30.356 kb on + strand, within EX31_RS02795at 30.356 kb on + strand, within EX31_RS02795at 30.356 kb on + strand, within EX31_RS02795at 30.356 kb on + strand, within EX31_RS02795at 30.357 kb on - strand, within EX31_RS02795at 30.360 kb on + strand, within EX31_RS02795at 30.360 kb on + strand, within EX31_RS02795at 30.361 kb on - strand, within EX31_RS02795at 30.361 kb on - strand, within EX31_RS02795at 30.361 kb on - strand, within EX31_RS02795at 30.361 kb on - strand, within EX31_RS02795at 30.367 kb on - strand, within EX31_RS02795at 30.371 kb on + strand, within EX31_RS02795at 30.372 kb on - strand, within EX31_RS02795at 30.458 kb on + strand, within EX31_RS02795at 30.463 kb on + strand, within EX31_RS02795at 30.463 kb on + strand, within EX31_RS02795at 30.464 kb on - strand, within EX31_RS02795at 30.464 kb on - strand, within EX31_RS02795at 30.473 kb on + strand, within EX31_RS02795at 30.473 kb on + strand, within EX31_RS02795at 30.473 kb on + strand, within EX31_RS02795at 30.473 kb on + strand, within EX31_RS02795at 30.474 kb on - strand, within EX31_RS02795at 30.474 kb on - strand, within EX31_RS02795at 30.474 kb on - strand, within EX31_RS02795at 30.474 kb on - strand, within EX31_RS02795at 30.474 kb on - strand, within EX31_RS02795at 30.476 kb on - strand, within EX31_RS02795at 30.476 kb on - strand, within EX31_RS02795at 30.476 kb on - strand, within EX31_RS02795at 30.492 kb on + strand, within EX31_RS02795at 30.492 kb on + strand, within EX31_RS02795at 30.493 kb on - strand, within EX31_RS02795at 30.493 kb on - strand, within EX31_RS02795at 30.493 kb on - strand, within EX31_RS02795at 30.493 kb on - strand, within EX31_RS02795at 30.495 kb on + strand, within EX31_RS02795at 30.495 kb on + strand, within EX31_RS02795at 30.496 kb on - strand, within EX31_RS02795at 30.496 kb on - strand, within EX31_RS02795at 30.501 kb on + strand, within EX31_RS02795at 30.502 kb on - strand, within EX31_RS02795at 30.508 kb on + strand, within EX31_RS02795at 30.508 kb on + strand, within EX31_RS02795

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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28,160 + EX31_RS02785 0.53 +0.3
28,163 - EX31_RS02785 0.54 +0.0
28,202 + EX31_RS02785 0.55 -0.7
28,392 - EX31_RS02785 0.64 -0.4
28,416 - EX31_RS02785 0.65 -0.7
28,463 - EX31_RS02785 0.67 -0.6
28,466 + EX31_RS02785 0.68 -0.5
28,467 - EX31_RS02785 0.68 +0.0
28,568 + EX31_RS02785 0.72 +0.2
28,577 + EX31_RS02785 0.73 -1.1
28,587 + EX31_RS02785 0.73 -0.5
28,588 - EX31_RS02785 0.73 +0.2
28,588 - EX31_RS02785 0.73 +0.1
28,626 + EX31_RS02785 0.75 +1.2
28,652 + EX31_RS02785 0.76 -0.4
28,653 - EX31_RS02785 0.76 +0.2
28,653 - EX31_RS02785 0.76 -1.6
28,653 - EX31_RS02785 0.76 +0.1
28,653 - EX31_RS02785 0.76 -1.0
28,653 - EX31_RS02785 0.76 +0.5
28,672 - EX31_RS02785 0.77 -2.0
28,706 + EX31_RS02785 0.79 -0.6
28,707 - EX31_RS02785 0.79 +0.6
28,708 + EX31_RS02785 0.79 -0.5
28,708 + EX31_RS02785 0.79 -0.2
28,708 + EX31_RS02785 0.79 -0.7
28,709 - EX31_RS02785 0.79 +0.8
28,709 - EX31_RS02785 0.79 -0.2
28,709 - EX31_RS02785 0.79 +0.8
28,709 - EX31_RS02785 0.79 -0.0
28,709 - EX31_RS02785 0.79 -0.8
28,709 - EX31_RS02785 0.79 -0.1
28,746 - EX31_RS02785 0.81 -0.4
28,788 + EX31_RS02785 0.83 -1.4
28,789 - EX31_RS02785 0.83 -0.7
28,818 - EX31_RS02785 0.84 -0.1
28,847 + EX31_RS02785 0.85 -0.3
28,881 - EX31_RS02785 0.87 -0.3
28,937 + EX31_RS02785 0.89 -3.4
28,938 - EX31_RS02785 0.90 -0.2
28,980 + +0.0
28,981 - +0.0
29,023 - -0.4
29,023 - +0.2
29,051 + -0.4
29,051 + -0.8
29,226 - EX31_RS02790 0.15 -1.3
29,228 - EX31_RS02790 0.15 -1.0
29,245 + EX31_RS02790 0.19 -0.8
29,302 + EX31_RS02790 0.32 -2.0
29,348 - EX31_RS02790 0.42 -0.3
29,348 - EX31_RS02790 0.42 -1.1
29,510 + EX31_RS02790 0.78 -0.3
29,567 + -0.3
29,567 + +0.5
29,567 + -0.6
29,567 + +0.5
29,568 - +0.3
29,569 + +0.1
29,570 - -0.3
29,570 - -0.3
29,570 - +0.3
29,570 - +0.0
29,570 - +0.1
29,570 - +0.3
29,599 + -1.4
29,599 + -0.1
29,600 - -0.0
29,604 - +0.8
29,728 - EX31_RS02795 0.10 -1.5
29,735 - EX31_RS02795 0.11 -1.1
29,802 + EX31_RS02795 0.17 +0.2
29,803 - EX31_RS02795 0.17 -0.6
29,825 - EX31_RS02795 0.19 +0.3
29,855 + EX31_RS02795 0.21 -1.0
29,855 + EX31_RS02795 0.21 -2.5
29,856 - EX31_RS02795 0.21 +0.8
29,900 - EX31_RS02795 0.25 +0.0
29,900 - EX31_RS02795 0.25 -1.5
29,943 - EX31_RS02795 0.29 -0.4
29,943 - EX31_RS02795 0.29 +1.2
30,007 - EX31_RS02795 0.35 -0.7
30,013 + EX31_RS02795 0.35 -0.3
30,014 - EX31_RS02795 0.35 +0.1
30,046 + EX31_RS02795 0.38 -0.4
30,046 + EX31_RS02795 0.38 +0.1
30,047 - EX31_RS02795 0.38 -2.6
30,063 - EX31_RS02795 0.40 -1.2
30,098 - EX31_RS02795 0.43 +0.2
30,138 - EX31_RS02795 0.46 -0.4
30,154 + EX31_RS02795 0.48 +0.7
30,155 - EX31_RS02795 0.48 -0.8
30,194 + EX31_RS02795 0.51 +0.2
30,194 + EX31_RS02795 0.51 -0.8
30,195 - EX31_RS02795 0.51 -1.3
30,228 + EX31_RS02795 0.54 +0.4
30,228 + EX31_RS02795 0.54 +0.5
30,228 + EX31_RS02795 0.54 +0.3
30,228 + EX31_RS02795 0.54 +0.7
30,229 - EX31_RS02795 0.54 +0.4
30,229 - EX31_RS02795 0.54 -0.2
30,229 - EX31_RS02795 0.54 -0.8
30,229 - EX31_RS02795 0.54 -0.2
30,229 - EX31_RS02795 0.54 +0.4
30,229 - EX31_RS02795 0.54 +1.4
30,283 + EX31_RS02795 0.59 +0.1
30,284 - EX31_RS02795 0.59 -0.7
30,284 - EX31_RS02795 0.59 -0.7
30,284 - EX31_RS02795 0.59 -0.6
30,284 - EX31_RS02795 0.59 +1.7
30,284 - EX31_RS02795 0.59 -0.3
30,285 + EX31_RS02795 0.59 -0.2
30,285 + EX31_RS02795 0.59 +0.5
30,286 - EX31_RS02795 0.59 +1.5
30,286 - EX31_RS02795 0.59 -0.9
30,286 - EX31_RS02795 0.59 -0.1
30,307 + EX31_RS02795 0.61 +1.2
30,356 + EX31_RS02795 0.66 -0.6
30,356 + EX31_RS02795 0.66 -0.1
30,356 + EX31_RS02795 0.66 -0.0
30,356 + EX31_RS02795 0.66 +0.4
30,357 - EX31_RS02795 0.66 +0.4
30,360 + EX31_RS02795 0.66 +0.2
30,360 + EX31_RS02795 0.66 -1.0
30,361 - EX31_RS02795 0.66 +0.2
30,361 - EX31_RS02795 0.66 +0.6
30,361 - EX31_RS02795 0.66 -1.4
30,361 - EX31_RS02795 0.66 -0.4
30,367 - EX31_RS02795 0.66 -0.3
30,371 + EX31_RS02795 0.67 -0.7
30,372 - EX31_RS02795 0.67 -0.5
30,458 + EX31_RS02795 0.75 +1.1
30,463 + EX31_RS02795 0.75 +0.1
30,463 + EX31_RS02795 0.75 -0.0
30,464 - EX31_RS02795 0.75 +0.4
30,464 - EX31_RS02795 0.75 +0.6
30,473 + EX31_RS02795 0.76 +0.8
30,473 + EX31_RS02795 0.76 -0.1
30,473 + EX31_RS02795 0.76 -0.3
30,473 + EX31_RS02795 0.76 +1.1
30,474 - EX31_RS02795 0.76 -0.2
30,474 - EX31_RS02795 0.76 +0.2
30,474 - EX31_RS02795 0.76 -2.4
30,474 - EX31_RS02795 0.76 -0.5
30,474 - EX31_RS02795 0.76 +0.2
30,476 - EX31_RS02795 0.76 +0.4
30,476 - EX31_RS02795 0.76 -0.5
30,476 - EX31_RS02795 0.76 -0.4
30,492 + EX31_RS02795 0.78 -0.9
30,492 + EX31_RS02795 0.78 -0.3
30,493 - EX31_RS02795 0.78 -0.2
30,493 - EX31_RS02795 0.78 -0.2
30,493 - EX31_RS02795 0.78 +0.4
30,493 - EX31_RS02795 0.78 -0.7
30,495 + EX31_RS02795 0.78 +0.3
30,495 + EX31_RS02795 0.78 -0.3
30,496 - EX31_RS02795 0.78 +0.9
30,496 - EX31_RS02795 0.78 -0.5
30,501 + EX31_RS02795 0.78 -0.7
30,502 - EX31_RS02795 0.78 -0.6
30,508 + EX31_RS02795 0.79 +0.7
30,508 + EX31_RS02795 0.79 -0.1

Or see this region's nucleotide sequence