Strain Fitness in Rahnella sp. WP5 around EX31_RS01200

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01195 and EX31_RS01200 are separated by 314 nucleotidesEX31_RS01200 and EX31_RS01205 are separated by 205 nucleotides EX31_RS01195: EX31_RS01195 - SDR family oxidoreductase, at 264,793 to 265,698 _RS01195 EX31_RS01200: EX31_RS01200 - hypothetical protein, at 266,013 to 266,234 _RS01200 EX31_RS01205: EX31_RS01205 - MurR/RpiR family transcriptional regulator, at 266,440 to 267,348 _RS01205 Position (kb) 266 267Strain fitness (log2 ratio) -2 -1 0 1at 265.297 kb on + strand, within EX31_RS01195at 265.297 kb on + strand, within EX31_RS01195at 265.298 kb on - strand, within EX31_RS01195at 265.298 kb on - strand, within EX31_RS01195at 265.360 kb on - strand, within EX31_RS01195at 265.362 kb on + strand, within EX31_RS01195at 265.363 kb on - strand, within EX31_RS01195at 265.363 kb on - strand, within EX31_RS01195at 265.363 kb on - strand, within EX31_RS01195at 265.363 kb on - strand, within EX31_RS01195at 265.363 kb on - strand, within EX31_RS01195at 265.363 kb on - strand, within EX31_RS01195at 265.508 kb on - strand, within EX31_RS01195at 265.618 kb on + strandat 265.618 kb on + strandat 265.618 kb on + strandat 265.618 kb on + strandat 265.619 kb on - strandat 265.619 kb on - strandat 265.619 kb on - strandat 265.694 kb on + strandat 265.695 kb on - strandat 265.695 kb on - strandat 265.697 kb on - strandat 265.697 kb on - strandat 265.697 kb on - strandat 265.779 kb on + strandat 265.783 kb on + strandat 265.784 kb on - strandat 265.791 kb on + strandat 265.800 kb on - strandat 265.819 kb on + strandat 265.819 kb on + strandat 265.820 kb on - strandat 265.831 kb on - strandat 265.843 kb on + strandat 265.965 kb on - strandat 266.096 kb on - strand, within EX31_RS01200at 266.151 kb on - strand, within EX31_RS01200at 266.151 kb on - strand, within EX31_RS01200at 266.169 kb on + strand, within EX31_RS01200at 266.169 kb on + strand, within EX31_RS01200at 266.169 kb on + strand, within EX31_RS01200at 266.169 kb on + strand, within EX31_RS01200at 266.169 kb on + strand, within EX31_RS01200at 266.169 kb on + strand, within EX31_RS01200at 266.169 kb on + strand, within EX31_RS01200at 266.169 kb on + strand, within EX31_RS01200at 266.170 kb on - strand, within EX31_RS01200at 266.170 kb on - strand, within EX31_RS01200at 266.170 kb on - strand, within EX31_RS01200at 266.170 kb on - strand, within EX31_RS01200at 266.170 kb on - strand, within EX31_RS01200at 266.170 kb on - strand, within EX31_RS01200at 266.170 kb on - strand, within EX31_RS01200at 266.170 kb on - strand, within EX31_RS01200at 266.170 kb on - strand, within EX31_RS01200at 266.266 kb on + strandat 266.267 kb on - strandat 266.294 kb on + strandat 266.307 kb on - strandat 266.366 kb on - strandat 266.555 kb on - strand, within EX31_RS01205at 266.641 kb on - strand, within EX31_RS01205at 266.697 kb on + strand, within EX31_RS01205at 266.698 kb on - strand, within EX31_RS01205at 266.719 kb on + strand, within EX31_RS01205at 266.720 kb on - strand, within EX31_RS01205at 266.826 kb on + strand, within EX31_RS01205at 266.826 kb on + strand, within EX31_RS01205at 266.834 kb on - strand, within EX31_RS01205at 266.874 kb on - strand, within EX31_RS01205at 266.874 kb on - strand, within EX31_RS01205at 266.874 kb on - strand, within EX31_RS01205at 266.986 kb on - strand, within EX31_RS01205at 267.000 kb on + strand, within EX31_RS01205at 267.001 kb on - strand, within EX31_RS01205at 267.163 kb on + strand, within EX31_RS01205at 267.163 kb on + strand, within EX31_RS01205at 267.167 kb on - strand, within EX31_RS01205at 267.167 kb on - strand, within EX31_RS01205at 267.172 kb on - strand, within EX31_RS01205

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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265,297 + EX31_RS01195 0.56 +1.0
265,297 + EX31_RS01195 0.56 +0.4
265,298 - EX31_RS01195 0.56 -1.7
265,298 - EX31_RS01195 0.56 -2.6
265,360 - EX31_RS01195 0.63 +0.8
265,362 + EX31_RS01195 0.63 +0.6
265,363 - EX31_RS01195 0.63 -0.3
265,363 - EX31_RS01195 0.63 -1.0
265,363 - EX31_RS01195 0.63 -0.1
265,363 - EX31_RS01195 0.63 +1.5
265,363 - EX31_RS01195 0.63 -0.7
265,363 - EX31_RS01195 0.63 -0.5
265,508 - EX31_RS01195 0.79 +1.0
265,618 + -0.0
265,618 + -0.7
265,618 + +0.2
265,618 + -1.0
265,619 - -0.3
265,619 - -0.1
265,619 - -0.8
265,694 + -0.1
265,695 - +0.7
265,695 - +0.0
265,697 - -0.1
265,697 - +1.2
265,697 - +0.7
265,779 + +0.5
265,783 + -1.2
265,784 - +0.2
265,791 + +0.8
265,800 - +0.2
265,819 + +0.7
265,819 + +0.3
265,820 - -1.2
265,831 - +0.1
265,843 + +0.7
265,965 - -0.5
266,096 - EX31_RS01200 0.37 -0.8
266,151 - EX31_RS01200 0.62 -2.1
266,151 - EX31_RS01200 0.62 -0.4
266,169 + EX31_RS01200 0.70 -0.9
266,169 + EX31_RS01200 0.70 -0.0
266,169 + EX31_RS01200 0.70 +0.0
266,169 + EX31_RS01200 0.70 -0.1
266,169 + EX31_RS01200 0.70 +0.4
266,169 + EX31_RS01200 0.70 -0.5
266,169 + EX31_RS01200 0.70 +0.4
266,169 + EX31_RS01200 0.70 -0.1
266,170 - EX31_RS01200 0.71 -2.0
266,170 - EX31_RS01200 0.71 -1.5
266,170 - EX31_RS01200 0.71 -1.6
266,170 - EX31_RS01200 0.71 +0.2
266,170 - EX31_RS01200 0.71 +0.3
266,170 - EX31_RS01200 0.71 -0.5
266,170 - EX31_RS01200 0.71 -0.0
266,170 - EX31_RS01200 0.71 -0.7
266,170 - EX31_RS01200 0.71 -0.7
266,266 + -2.0
266,267 - +0.6
266,294 + -0.0
266,307 - -0.1
266,366 - +0.4
266,555 - EX31_RS01205 0.13 +0.6
266,641 - EX31_RS01205 0.22 +0.2
266,697 + EX31_RS01205 0.28 -0.9
266,698 - EX31_RS01205 0.28 +0.8
266,719 + EX31_RS01205 0.31 -0.3
266,720 - EX31_RS01205 0.31 +0.5
266,826 + EX31_RS01205 0.42 +0.5
266,826 + EX31_RS01205 0.42 +0.2
266,834 - EX31_RS01205 0.43 -0.8
266,874 - EX31_RS01205 0.48 -1.7
266,874 - EX31_RS01205 0.48 +0.3
266,874 - EX31_RS01205 0.48 +1.4
266,986 - EX31_RS01205 0.60 +1.1
267,000 + EX31_RS01205 0.62 -0.3
267,001 - EX31_RS01205 0.62 -0.3
267,163 + EX31_RS01205 0.80 +0.1
267,163 + EX31_RS01205 0.80 +0.1
267,167 - EX31_RS01205 0.80 -0.9
267,167 - EX31_RS01205 0.80 -1.7
267,172 - EX31_RS01205 0.81 -0.7

Or see this region's nucleotide sequence