Strain Fitness in Rahnella sp. WP5 around EX31_RS01155

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01150 and EX31_RS01155 are separated by 505 nucleotidesEX31_RS01155 and EX31_RS01160 are separated by 76 nucleotides EX31_RS01150: EX31_RS01150 - oxaloacetate-decarboxylating malate dehydrogenase, at 250,513 to 252,198 _RS01150 EX31_RS01155: EX31_RS01155 - AEC family transporter, at 252,704 to 253,648 _RS01155 EX31_RS01160: EX31_RS01160 - fumarate hydratase, at 253,725 to 255,371 _RS01160 Position (kb) 252 253 254Strain fitness (log2 ratio) -2 -1 0 1at 251.809 kb on - strand, within EX31_RS01150at 251.855 kb on + strand, within EX31_RS01150at 251.856 kb on - strand, within EX31_RS01150at 251.856 kb on - strand, within EX31_RS01150at 251.857 kb on + strand, within EX31_RS01150at 251.857 kb on + strand, within EX31_RS01150at 251.857 kb on + strand, within EX31_RS01150at 251.857 kb on + strand, within EX31_RS01150at 251.858 kb on - strand, within EX31_RS01150at 251.900 kb on + strand, within EX31_RS01150at 251.901 kb on - strand, within EX31_RS01150at 252.054 kb on + strandat 252.055 kb on - strandat 252.154 kb on + strandat 252.177 kb on - strandat 252.203 kb on - strandat 252.843 kb on + strand, within EX31_RS01155at 252.844 kb on - strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.864 kb on + strand, within EX31_RS01155at 252.865 kb on - strand, within EX31_RS01155at 252.868 kb on + strand, within EX31_RS01155at 252.868 kb on + strand, within EX31_RS01155at 252.868 kb on + strand, within EX31_RS01155at 252.935 kb on + strand, within EX31_RS01155at 252.935 kb on + strand, within EX31_RS01155at 253.102 kb on + strand, within EX31_RS01155at 253.102 kb on + strand, within EX31_RS01155at 253.282 kb on + strand, within EX31_RS01155at 253.283 kb on - strand, within EX31_RS01155at 253.399 kb on + strand, within EX31_RS01155at 253.399 kb on + strand, within EX31_RS01155at 253.562 kb on + strandat 253.562 kb on + strandat 253.563 kb on - strandat 253.563 kb on - strandat 253.563 kb on - strandat 253.612 kb on - strandat 253.612 kb on - strandat 253.634 kb on + strandat 253.635 kb on - strandat 253.859 kb on - strandat 253.931 kb on - strand, within EX31_RS01160at 253.946 kb on + strand, within EX31_RS01160at 253.980 kb on - strand, within EX31_RS01160at 254.111 kb on - strand, within EX31_RS01160at 254.113 kb on + strand, within EX31_RS01160at 254.113 kb on + strand, within EX31_RS01160at 254.113 kb on + strand, within EX31_RS01160at 254.134 kb on + strand, within EX31_RS01160at 254.134 kb on + strand, within EX31_RS01160at 254.135 kb on - strand, within EX31_RS01160at 254.135 kb on - strand, within EX31_RS01160at 254.135 kb on - strand, within EX31_RS01160at 254.231 kb on + strand, within EX31_RS01160at 254.338 kb on + strand, within EX31_RS01160at 254.338 kb on + strand, within EX31_RS01160at 254.339 kb on - strand, within EX31_RS01160at 254.339 kb on - strand, within EX31_RS01160at 254.339 kb on - strand, within EX31_RS01160at 254.405 kb on + strand, within EX31_RS01160at 254.405 kb on + strand, within EX31_RS01160at 254.405 kb on + strand, within EX31_RS01160at 254.406 kb on - strand, within EX31_RS01160at 254.469 kb on + strand, within EX31_RS01160at 254.470 kb on - strand, within EX31_RS01160at 254.473 kb on - strand, within EX31_RS01160at 254.473 kb on - strand, within EX31_RS01160at 254.591 kb on + strand, within EX31_RS01160at 254.614 kb on + strand, within EX31_RS01160at 254.614 kb on + strand, within EX31_RS01160at 254.614 kb on + strand, within EX31_RS01160at 254.614 kb on + strand, within EX31_RS01160at 254.615 kb on - strand, within EX31_RS01160at 254.615 kb on - strand, within EX31_RS01160at 254.615 kb on - strand, within EX31_RS01160at 254.638 kb on - strand, within EX31_RS01160

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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251,809 - EX31_RS01150 0.77 -0.1
251,855 + EX31_RS01150 0.80 -0.5
251,856 - EX31_RS01150 0.80 -1.9
251,856 - EX31_RS01150 0.80 -0.4
251,857 + EX31_RS01150 0.80 +1.2
251,857 + EX31_RS01150 0.80 +0.6
251,857 + EX31_RS01150 0.80 +0.6
251,857 + EX31_RS01150 0.80 -2.3
251,858 - EX31_RS01150 0.80 +0.5
251,900 + EX31_RS01150 0.82 -2.1
251,901 - EX31_RS01150 0.82 -0.6
252,054 + -0.5
252,055 - -0.3
252,154 + +1.1
252,177 - +0.1
252,203 - +0.7
252,843 + EX31_RS01155 0.15 +0.1
252,844 - EX31_RS01155 0.15 -0.1
252,864 + EX31_RS01155 0.17 +0.8
252,864 + EX31_RS01155 0.17 +0.2
252,864 + EX31_RS01155 0.17 -0.6
252,864 + EX31_RS01155 0.17 -0.8
252,864 + EX31_RS01155 0.17 -0.9
252,864 + EX31_RS01155 0.17 -0.8
252,865 - EX31_RS01155 0.17 +0.3
252,868 + EX31_RS01155 0.17 -1.2
252,868 + EX31_RS01155 0.17 +0.5
252,868 + EX31_RS01155 0.17 -0.2
252,935 + EX31_RS01155 0.24 -1.0
252,935 + EX31_RS01155 0.24 +0.2
253,102 + EX31_RS01155 0.42 -0.9
253,102 + EX31_RS01155 0.42 -1.1
253,282 + EX31_RS01155 0.61 -1.2
253,283 - EX31_RS01155 0.61 -0.7
253,399 + EX31_RS01155 0.74 -0.2
253,399 + EX31_RS01155 0.74 -1.1
253,562 + +0.1
253,562 + +0.4
253,563 - +0.8
253,563 - -1.1
253,563 - +0.1
253,612 - -1.0
253,612 - -1.7
253,634 + +0.2
253,635 - -0.8
253,859 - +0.4
253,931 - EX31_RS01160 0.13 +0.1
253,946 + EX31_RS01160 0.13 -0.0
253,980 - EX31_RS01160 0.15 +0.8
254,111 - EX31_RS01160 0.23 +0.3
254,113 + EX31_RS01160 0.24 +0.8
254,113 + EX31_RS01160 0.24 +0.3
254,113 + EX31_RS01160 0.24 +0.1
254,134 + EX31_RS01160 0.25 -1.7
254,134 + EX31_RS01160 0.25 +1.1
254,135 - EX31_RS01160 0.25 +0.1
254,135 - EX31_RS01160 0.25 -0.1
254,135 - EX31_RS01160 0.25 +1.0
254,231 + EX31_RS01160 0.31 +1.7
254,338 + EX31_RS01160 0.37 +0.5
254,338 + EX31_RS01160 0.37 -0.1
254,339 - EX31_RS01160 0.37 -0.6
254,339 - EX31_RS01160 0.37 +0.2
254,339 - EX31_RS01160 0.37 -0.4
254,405 + EX31_RS01160 0.41 -1.2
254,405 + EX31_RS01160 0.41 +0.2
254,405 + EX31_RS01160 0.41 -0.9
254,406 - EX31_RS01160 0.41 +0.2
254,469 + EX31_RS01160 0.45 +0.9
254,470 - EX31_RS01160 0.45 +0.3
254,473 - EX31_RS01160 0.45 -1.1
254,473 - EX31_RS01160 0.45 -1.5
254,591 + EX31_RS01160 0.53 +0.9
254,614 + EX31_RS01160 0.54 -0.2
254,614 + EX31_RS01160 0.54 +0.3
254,614 + EX31_RS01160 0.54 +0.7
254,614 + EX31_RS01160 0.54 +0.6
254,615 - EX31_RS01160 0.54 +0.6
254,615 - EX31_RS01160 0.54 +1.6
254,615 - EX31_RS01160 0.54 +0.0
254,638 - EX31_RS01160 0.55 +0.1

Or see this region's nucleotide sequence