Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS12285 and EX31_RS12290 are separated by 7 nucleotides EX31_RS12290 and EX31_RS12295 are separated by 93 nucleotides
EX31_RS12285: EX31_RS12285 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 127,305 to 129,263
_RS12285
EX31_RS12290: EX31_RS12290 - galactoside O-acetyltransferase, at 129,271 to 129,852
_RS12290
EX31_RS12295: EX31_RS12295 - APC family permease, at 129,946 to 131,544
_RS12295
Position (kb) 129
130 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 128.286 kb on - strand, within EX31_RS12285 at 128.453 kb on + strand, within EX31_RS12285 at 128.453 kb on + strand, within EX31_RS12285 at 128.454 kb on - strand, within EX31_RS12285 at 128.454 kb on - strand, within EX31_RS12285 at 128.454 kb on - strand, within EX31_RS12285 at 128.454 kb on - strand, within EX31_RS12285 at 128.486 kb on + strand, within EX31_RS12285 at 128.486 kb on + strand, within EX31_RS12285 at 128.564 kb on + strand, within EX31_RS12285 at 128.564 kb on + strand, within EX31_RS12285 at 128.564 kb on + strand, within EX31_RS12285 at 128.564 kb on + strand, within EX31_RS12285 at 128.564 kb on + strand, within EX31_RS12285 at 128.565 kb on - strand, within EX31_RS12285 at 128.565 kb on - strand, within EX31_RS12285 at 128.565 kb on - strand, within EX31_RS12285 at 128.565 kb on - strand, within EX31_RS12285 at 128.565 kb on - strand, within EX31_RS12285 at 128.565 kb on - strand, within EX31_RS12285 at 128.670 kb on - strand, within EX31_RS12285 at 128.670 kb on - strand, within EX31_RS12285 at 128.696 kb on + strand, within EX31_RS12285 at 128.697 kb on - strand, within EX31_RS12285 at 128.699 kb on + strand, within EX31_RS12285 at 128.700 kb on - strand, within EX31_RS12285 at 128.700 kb on - strand, within EX31_RS12285 at 128.847 kb on - strand, within EX31_RS12285 at 128.855 kb on + strand, within EX31_RS12285 at 128.856 kb on - strand, within EX31_RS12285 at 128.856 kb on - strand, within EX31_RS12285 at 128.856 kb on - strand, within EX31_RS12285 at 128.893 kb on - strand, within EX31_RS12285 at 128.893 kb on - strand, within EX31_RS12285 at 128.926 kb on - strand, within EX31_RS12285 at 128.926 kb on - strand, within EX31_RS12285 at 128.967 kb on - strand, within EX31_RS12285 at 128.972 kb on + strand, within EX31_RS12285 at 128.972 kb on + strand, within EX31_RS12285 at 128.972 kb on + strand, within EX31_RS12285 at 128.972 kb on + strand, within EX31_RS12285 at 128.972 kb on + strand, within EX31_RS12285 at 128.972 kb on + strand, within EX31_RS12285 at 128.973 kb on - strand, within EX31_RS12285 at 128.973 kb on - strand, within EX31_RS12285 at 128.976 kb on + strand, within EX31_RS12285 at 128.976 kb on + strand, within EX31_RS12285 at 128.977 kb on - strand, within EX31_RS12285 at 128.977 kb on - strand, within EX31_RS12285 at 129.123 kb on + strand at 129.123 kb on + strand at 129.123 kb on + strand at 129.123 kb on + strand at 129.123 kb on + strand at 129.123 kb on + strand at 129.123 kb on + strand at 129.124 kb on - strand at 129.124 kb on - strand at 129.124 kb on - strand at 129.124 kb on - strand at 129.124 kb on - strand at 129.124 kb on - strand at 129.124 kb on - strand at 129.124 kb on - strand at 129.124 kb on - strand at 129.126 kb on + strand at 129.127 kb on - strand at 129.127 kb on - strand at 129.127 kb on - strand at 129.127 kb on - strand at 129.129 kb on + strand at 129.129 kb on + strand at 129.160 kb on - strand at 129.272 kb on + strand at 129.313 kb on + strand at 129.313 kb on + strand at 129.313 kb on + strand at 129.313 kb on + strand at 129.313 kb on + strand at 129.313 kb on + strand at 129.314 kb on - strand at 129.314 kb on - strand at 129.314 kb on - strand at 129.314 kb on - strand at 129.316 kb on + strand at 129.316 kb on + strand at 129.317 kb on - strand at 129.317 kb on - strand at 129.329 kb on - strand at 129.396 kb on + strand, within EX31_RS12290 at 129.396 kb on + strand, within EX31_RS12290 at 129.396 kb on + strand, within EX31_RS12290 at 129.397 kb on - strand, within EX31_RS12290 at 129.397 kb on - strand, within EX31_RS12290 at 129.450 kb on + strand, within EX31_RS12290 at 129.450 kb on + strand, within EX31_RS12290 at 129.450 kb on + strand, within EX31_RS12290 at 129.451 kb on - strand, within EX31_RS12290 at 129.451 kb on - strand, within EX31_RS12290 at 129.451 kb on - strand, within EX31_RS12290 at 129.451 kb on - strand, within EX31_RS12290 at 129.451 kb on - strand, within EX31_RS12290 at 129.451 kb on - strand, within EX31_RS12290 at 129.589 kb on + strand, within EX31_RS12290 at 129.589 kb on + strand, within EX31_RS12290 at 129.590 kb on - strand, within EX31_RS12290 at 129.590 kb on - strand, within EX31_RS12290 at 129.590 kb on - strand, within EX31_RS12290 at 129.590 kb on - strand, within EX31_RS12290 at 129.611 kb on + strand, within EX31_RS12290 at 129.633 kb on + strand, within EX31_RS12290 at 129.633 kb on + strand, within EX31_RS12290 at 129.634 kb on - strand, within EX31_RS12290 at 129.645 kb on - strand, within EX31_RS12290 at 129.752 kb on + strand, within EX31_RS12290 at 129.752 kb on + strand, within EX31_RS12290 at 129.753 kb on - strand, within EX31_RS12290 at 129.753 kb on - strand, within EX31_RS12290 at 129.753 kb on - strand, within EX31_RS12290 at 129.753 kb on - strand, within EX31_RS12290 at 129.758 kb on + strand, within EX31_RS12290 at 129.759 kb on - strand, within EX31_RS12290 at 129.759 kb on - strand, within EX31_RS12290 at 129.759 kb on - strand, within EX31_RS12290 at 129.759 kb on - strand, within EX31_RS12290 at 129.813 kb on + strand at 129.814 kb on - strand at 129.815 kb on + strand at 129.815 kb on + strand at 129.815 kb on + strand at 129.815 kb on + strand at 129.816 kb on - strand at 129.816 kb on - strand at 129.816 kb on - strand at 129.828 kb on + strand at 129.829 kb on - strand at 129.852 kb on + strand at 129.852 kb on + strand at 129.853 kb on - strand at 129.853 kb on - strand at 129.883 kb on + strand at 129.884 kb on - strand at 129.898 kb on - strand at 129.898 kb on - strand at 129.898 kb on - strand at 129.898 kb on - strand at 129.898 kb on - strand at 129.898 kb on - strand at 129.898 kb on - strand at 129.898 kb on - strand at 129.912 kb on - strand at 130.049 kb on + strand at 130.119 kb on - strand, within EX31_RS12295 at 130.119 kb on - strand, within EX31_RS12295 at 130.119 kb on - strand, within EX31_RS12295 at 130.130 kb on + strand, within EX31_RS12295 at 130.154 kb on + strand, within EX31_RS12295 at 130.154 kb on + strand, within EX31_RS12295 at 130.154 kb on + strand, within EX31_RS12295 at 130.154 kb on + strand, within EX31_RS12295 at 130.154 kb on + strand, within EX31_RS12295 at 130.154 kb on + strand, within EX31_RS12295 at 130.154 kb on + strand, within EX31_RS12295 at 130.154 kb on + strand, within EX31_RS12295 at 130.154 kb on + strand, within EX31_RS12295 at 130.154 kb on + strand, within EX31_RS12295 at 130.154 kb on + strand, within EX31_RS12295 at 130.154 kb on + strand, within EX31_RS12295 at 130.155 kb on - strand, within EX31_RS12295 at 130.155 kb on - strand, within EX31_RS12295 at 130.155 kb on - strand, within EX31_RS12295 at 130.155 kb on - strand, within EX31_RS12295 at 130.155 kb on - strand, within EX31_RS12295 at 130.155 kb on - strand, within EX31_RS12295 at 130.155 kb on - strand, within EX31_RS12295 at 130.155 kb on - strand, within EX31_RS12295 at 130.155 kb on - strand, within EX31_RS12295 at 130.155 kb on - strand, within EX31_RS12295 at 130.226 kb on + strand, within EX31_RS12295 at 130.226 kb on + strand, within EX31_RS12295 at 130.226 kb on + strand, within EX31_RS12295 at 130.387 kb on - strand, within EX31_RS12295 at 130.413 kb on + strand, within EX31_RS12295 at 130.414 kb on - strand, within EX31_RS12295 at 130.414 kb on - strand, within EX31_RS12295 at 130.415 kb on + strand, within EX31_RS12295 at 130.415 kb on + strand, within EX31_RS12295 at 130.415 kb on + strand, within EX31_RS12295 at 130.415 kb on + strand, within EX31_RS12295 at 130.415 kb on + strand, within EX31_RS12295 at 130.415 kb on + strand, within EX31_RS12295 at 130.415 kb on + strand, within EX31_RS12295 at 130.415 kb on + strand, within EX31_RS12295 at 130.415 kb on + strand, within EX31_RS12295 at 130.416 kb on - strand, within EX31_RS12295 at 130.416 kb on - strand, within EX31_RS12295 at 130.416 kb on - strand, within EX31_RS12295 at 130.416 kb on - strand, within EX31_RS12295 at 130.416 kb on - strand, within EX31_RS12295 at 130.416 kb on - strand, within EX31_RS12295 at 130.416 kb on - strand, within EX31_RS12295 at 130.416 kb on - strand, within EX31_RS12295 at 130.416 kb on - strand, within EX31_RS12295 at 130.622 kb on + strand, within EX31_RS12295 at 130.623 kb on - strand, within EX31_RS12295 at 130.623 kb on - strand, within EX31_RS12295 at 130.626 kb on + strand, within EX31_RS12295 at 130.626 kb on + strand, within EX31_RS12295 at 130.626 kb on + strand, within EX31_RS12295 at 130.627 kb on - strand, within EX31_RS12295 at 130.627 kb on - strand, within EX31_RS12295 at 130.627 kb on - strand, within EX31_RS12295 at 130.627 kb on - strand, within EX31_RS12295 at 130.627 kb on - strand, within EX31_RS12295 at 130.627 kb on - strand, within EX31_RS12295 at 130.627 kb on - strand, within EX31_RS12295 at 130.627 kb on - strand, within EX31_RS12295 at 130.674 kb on + strand, within EX31_RS12295 at 130.686 kb on + strand, within EX31_RS12295 at 130.686 kb on + strand, within EX31_RS12295 at 130.687 kb on - strand, within EX31_RS12295 at 130.687 kb on - strand, within EX31_RS12295 at 130.687 kb on - strand, within EX31_RS12295 at 130.715 kb on + strand, within EX31_RS12295 at 130.731 kb on + strand, within EX31_RS12295 at 130.811 kb on + strand, within EX31_RS12295 at 130.811 kb on + strand, within EX31_RS12295 at 130.811 kb on + strand, within EX31_RS12295 at 130.811 kb on + strand, within EX31_RS12295 at 130.812 kb on - strand, within EX31_RS12295 at 130.812 kb on - strand, within EX31_RS12295 at 130.812 kb on - strand, within EX31_RS12295 at 130.812 kb on - strand, within EX31_RS12295 at 130.812 kb on - strand, within EX31_RS12295
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 128,286 - EX31_RS12285 0.50 +0.1 128,453 + EX31_RS12285 0.59 -0.8 128,453 + EX31_RS12285 0.59 -2.3 128,454 - EX31_RS12285 0.59 +0.4 128,454 - EX31_RS12285 0.59 -0.2 128,454 - EX31_RS12285 0.59 -0.2 128,454 - EX31_RS12285 0.59 +0.2 128,486 + EX31_RS12285 0.60 +0.5 128,486 + EX31_RS12285 0.60 +0.3 128,564 + EX31_RS12285 0.64 -0.2 128,564 + EX31_RS12285 0.64 +0.0 128,564 + EX31_RS12285 0.64 -3.6 128,564 + EX31_RS12285 0.64 -0.3 128,564 + EX31_RS12285 0.64 +0.2 128,565 - EX31_RS12285 0.64 -0.1 128,565 - EX31_RS12285 0.64 +0.3 128,565 - EX31_RS12285 0.64 -0.3 128,565 - EX31_RS12285 0.64 +0.3 128,565 - EX31_RS12285 0.64 +0.0 128,565 - EX31_RS12285 0.64 -1.2 128,670 - EX31_RS12285 0.70 -0.5 128,670 - EX31_RS12285 0.70 -0.4 128,696 + EX31_RS12285 0.71 -0.8 128,697 - EX31_RS12285 0.71 -1.0 128,699 + EX31_RS12285 0.71 +0.0 128,700 - EX31_RS12285 0.71 +0.4 128,700 - EX31_RS12285 0.71 +0.3 128,847 - EX31_RS12285 0.79 -0.3 128,855 + EX31_RS12285 0.79 +0.3 128,856 - EX31_RS12285 0.79 -0.1 128,856 - EX31_RS12285 0.79 -0.6 128,856 - EX31_RS12285 0.79 +0.9 128,893 - EX31_RS12285 0.81 -0.1 128,893 - EX31_RS12285 0.81 +1.0 128,926 - EX31_RS12285 0.83 +0.7 128,926 - EX31_RS12285 0.83 +1.1 128,967 - EX31_RS12285 0.85 -1.3 128,972 + EX31_RS12285 0.85 +0.5 128,972 + EX31_RS12285 0.85 -0.3 128,972 + EX31_RS12285 0.85 -0.2 128,972 + EX31_RS12285 0.85 -0.6 128,972 + EX31_RS12285 0.85 -0.7 128,972 + EX31_RS12285 0.85 -0.5 128,973 - EX31_RS12285 0.85 -1.4 128,973 - EX31_RS12285 0.85 +0.4 128,976 + EX31_RS12285 0.85 +1.2 128,976 + EX31_RS12285 0.85 +0.6 128,977 - EX31_RS12285 0.85 +0.5 128,977 - EX31_RS12285 0.85 +0.0 129,123 + +0.7 129,123 + +0.0 129,123 + -0.5 129,123 + -0.7 129,123 + +0.2 129,123 + +1.5 129,123 + +0.1 129,124 - +0.2 129,124 - +0.1 129,124 - +0.1 129,124 - -0.5 129,124 - -0.6 129,124 - -0.1 129,124 - +0.8 129,124 - +0.2 129,124 - +0.4 129,126 + -0.3 129,127 - -3.0 129,127 - -0.3 129,127 - -0.4 129,127 - -0.3 129,129 + -1.0 129,129 + -0.6 129,160 - +0.5 129,272 + -0.2 129,313 + +0.1 129,313 + -0.5 129,313 + +0.5 129,313 + -0.4 129,313 + -0.8 129,313 + +0.6 129,314 - +0.2 129,314 - +0.1 129,314 - +0.1 129,314 - +0.4 129,316 + +1.6 129,316 + +0.2 129,317 - -0.1 129,317 - -0.4 129,329 - -0.1 129,396 + EX31_RS12290 0.21 -0.6 129,396 + EX31_RS12290 0.21 -0.7 129,396 + EX31_RS12290 0.21 -1.6 129,397 - EX31_RS12290 0.22 -0.2 129,397 - EX31_RS12290 0.22 -0.9 129,450 + EX31_RS12290 0.31 +0.7 129,450 + EX31_RS12290 0.31 -0.7 129,450 + EX31_RS12290 0.31 +0.4 129,451 - EX31_RS12290 0.31 -0.3 129,451 - EX31_RS12290 0.31 +0.3 129,451 - EX31_RS12290 0.31 -0.9 129,451 - EX31_RS12290 0.31 +0.3 129,451 - EX31_RS12290 0.31 +0.2 129,451 - EX31_RS12290 0.31 -1.8 129,589 + EX31_RS12290 0.55 -0.8 129,589 + EX31_RS12290 0.55 -1.1 129,590 - EX31_RS12290 0.55 +0.9 129,590 - EX31_RS12290 0.55 -0.2 129,590 - EX31_RS12290 0.55 +0.6 129,590 - EX31_RS12290 0.55 -0.0 129,611 + EX31_RS12290 0.58 -1.2 129,633 + EX31_RS12290 0.62 -0.0 129,633 + EX31_RS12290 0.62 -0.1 129,634 - EX31_RS12290 0.62 -0.8 129,645 - EX31_RS12290 0.64 -0.7 129,752 + EX31_RS12290 0.83 -0.4 129,752 + EX31_RS12290 0.83 -0.1 129,753 - EX31_RS12290 0.83 -0.6 129,753 - EX31_RS12290 0.83 +0.2 129,753 - EX31_RS12290 0.83 +0.3 129,753 - EX31_RS12290 0.83 +0.3 129,758 + EX31_RS12290 0.84 -0.7 129,759 - EX31_RS12290 0.84 +0.5 129,759 - EX31_RS12290 0.84 +0.1 129,759 - EX31_RS12290 0.84 +0.2 129,759 - EX31_RS12290 0.84 +0.2 129,813 + +1.6 129,814 - +0.3 129,815 + -0.6 129,815 + +0.7 129,815 + -0.9 129,815 + +0.2 129,816 - +0.0 129,816 - +0.7 129,816 - -0.8 129,828 + +0.3 129,829 - +1.0 129,852 + +0.1 129,852 + +0.2 129,853 - -0.9 129,853 - -0.2 129,883 + +0.4 129,884 - -0.6 129,898 - +0.2 129,898 - -0.4 129,898 - +0.9 129,898 - -0.4 129,898 - +1.1 129,898 - -0.7 129,898 - +0.1 129,898 - -0.3 129,912 - -0.1 130,049 + -0.1 130,119 - EX31_RS12295 0.11 +0.2 130,119 - EX31_RS12295 0.11 +0.5 130,119 - EX31_RS12295 0.11 +0.1 130,130 + EX31_RS12295 0.12 +0.8 130,154 + EX31_RS12295 0.13 +0.2 130,154 + EX31_RS12295 0.13 -1.4 130,154 + EX31_RS12295 0.13 +1.9 130,154 + EX31_RS12295 0.13 -0.3 130,154 + EX31_RS12295 0.13 -0.3 130,154 + EX31_RS12295 0.13 +0.3 130,154 + EX31_RS12295 0.13 -0.5 130,154 + EX31_RS12295 0.13 -0.3 130,154 + EX31_RS12295 0.13 -2.0 130,154 + EX31_RS12295 0.13 +0.3 130,154 + EX31_RS12295 0.13 +0.1 130,154 + EX31_RS12295 0.13 +0.2 130,155 - EX31_RS12295 0.13 +0.8 130,155 - EX31_RS12295 0.13 +0.4 130,155 - EX31_RS12295 0.13 -0.6 130,155 - EX31_RS12295 0.13 -0.5 130,155 - EX31_RS12295 0.13 -1.4 130,155 - EX31_RS12295 0.13 -1.5 130,155 - EX31_RS12295 0.13 -0.2 130,155 - EX31_RS12295 0.13 +0.9 130,155 - EX31_RS12295 0.13 -0.2 130,155 - EX31_RS12295 0.13 -0.2 130,226 + EX31_RS12295 0.18 +0.3 130,226 + EX31_RS12295 0.18 -0.1 130,226 + EX31_RS12295 0.18 -2.2 130,387 - EX31_RS12295 0.28 +0.5 130,413 + EX31_RS12295 0.29 +0.3 130,414 - EX31_RS12295 0.29 +0.1 130,414 - EX31_RS12295 0.29 +1.0 130,415 + EX31_RS12295 0.29 -0.5 130,415 + EX31_RS12295 0.29 +0.0 130,415 + EX31_RS12295 0.29 +0.3 130,415 + EX31_RS12295 0.29 +0.6 130,415 + EX31_RS12295 0.29 -0.4 130,415 + EX31_RS12295 0.29 -1.2 130,415 + EX31_RS12295 0.29 -0.7 130,415 + EX31_RS12295 0.29 -0.6 130,415 + EX31_RS12295 0.29 +0.1 130,416 - EX31_RS12295 0.29 +0.1 130,416 - EX31_RS12295 0.29 -1.1 130,416 - EX31_RS12295 0.29 -0.3 130,416 - EX31_RS12295 0.29 +0.1 130,416 - EX31_RS12295 0.29 +0.6 130,416 - EX31_RS12295 0.29 -0.4 130,416 - EX31_RS12295 0.29 -0.8 130,416 - EX31_RS12295 0.29 -0.2 130,416 - EX31_RS12295 0.29 -0.1 130,622 + EX31_RS12295 0.42 -0.6 130,623 - EX31_RS12295 0.42 +0.2 130,623 - EX31_RS12295 0.42 -1.0 130,626 + EX31_RS12295 0.43 +0.4 130,626 + EX31_RS12295 0.43 -0.0 130,626 + EX31_RS12295 0.43 +0.5 130,627 - EX31_RS12295 0.43 -0.4 130,627 - EX31_RS12295 0.43 +0.3 130,627 - EX31_RS12295 0.43 -0.2 130,627 - EX31_RS12295 0.43 +0.2 130,627 - EX31_RS12295 0.43 +0.2 130,627 - EX31_RS12295 0.43 +0.0 130,627 - EX31_RS12295 0.43 +0.5 130,627 - EX31_RS12295 0.43 +0.3 130,674 + EX31_RS12295 0.46 +1.3 130,686 + EX31_RS12295 0.46 -1.9 130,686 + EX31_RS12295 0.46 -0.1 130,687 - EX31_RS12295 0.46 -0.1 130,687 - EX31_RS12295 0.46 +0.2 130,687 - EX31_RS12295 0.46 -0.1 130,715 + EX31_RS12295 0.48 +0.5 130,731 + EX31_RS12295 0.49 +0.3 130,811 + EX31_RS12295 0.54 -0.3 130,811 + EX31_RS12295 0.54 -0.1 130,811 + EX31_RS12295 0.54 +0.5 130,811 + EX31_RS12295 0.54 +0.3 130,812 - EX31_RS12295 0.54 -0.7 130,812 - EX31_RS12295 0.54 +0.0 130,812 - EX31_RS12295 0.54 -0.3 130,812 - EX31_RS12295 0.54 +1.1 130,812 - EX31_RS12295 0.54 -0.6
Or see this region's nucleotide sequence