Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09740 and EX31_RS09745 are separated by 68 nucleotides EX31_RS09745 and EX31_RS09750 are separated by 181 nucleotides
EX31_RS09740: EX31_RS09740 - alpha-xylosidase, at 150,246 to 152,570
_RS09740
EX31_RS09745: EX31_RS09745 - XylR family transcriptional regulator, at 152,639 to 153,826
_RS09745
EX31_RS09750: EX31_RS09750 - sugar ABC transporter permease, at 154,008 to 155,207
_RS09750
Position (kb) 152
153
154 Strain fitness (log2 ratio) -2
-1
0
1
2 at 151.655 kb on - strand, within EX31_RS09740 at 151.655 kb on - strand, within EX31_RS09740 at 151.815 kb on + strand, within EX31_RS09740 at 151.816 kb on - strand, within EX31_RS09740 at 151.896 kb on + strand, within EX31_RS09740 at 151.897 kb on - strand, within EX31_RS09740 at 151.897 kb on - strand, within EX31_RS09740 at 151.897 kb on - strand, within EX31_RS09740 at 152.052 kb on + strand, within EX31_RS09740 at 152.052 kb on + strand, within EX31_RS09740 at 152.067 kb on + strand, within EX31_RS09740 at 152.067 kb on + strand, within EX31_RS09740 at 152.067 kb on + strand, within EX31_RS09740 at 152.068 kb on - strand, within EX31_RS09740 at 152.069 kb on + strand, within EX31_RS09740 at 152.069 kb on + strand, within EX31_RS09740 at 152.069 kb on + strand, within EX31_RS09740 at 152.069 kb on + strand, within EX31_RS09740 at 152.069 kb on + strand, within EX31_RS09740 at 152.069 kb on + strand, within EX31_RS09740 at 152.069 kb on + strand, within EX31_RS09740 at 152.070 kb on - strand, within EX31_RS09740 at 152.070 kb on - strand, within EX31_RS09740 at 152.070 kb on - strand, within EX31_RS09740 at 152.070 kb on - strand, within EX31_RS09740 at 152.070 kb on - strand, within EX31_RS09740 at 152.131 kb on - strand, within EX31_RS09740 at 152.229 kb on + strand, within EX31_RS09740 at 152.229 kb on + strand, within EX31_RS09740 at 152.229 kb on + strand, within EX31_RS09740 at 152.230 kb on - strand, within EX31_RS09740 at 152.230 kb on - strand, within EX31_RS09740 at 152.230 kb on - strand, within EX31_RS09740 at 152.230 kb on - strand, within EX31_RS09740 at 152.230 kb on - strand, within EX31_RS09740 at 152.230 kb on - strand, within EX31_RS09740 at 152.264 kb on + strand, within EX31_RS09740 at 152.284 kb on - strand, within EX31_RS09740 at 152.289 kb on + strand, within EX31_RS09740 at 152.290 kb on - strand, within EX31_RS09740 at 152.411 kb on - strand at 152.414 kb on + strand at 152.414 kb on + strand at 152.414 kb on + strand at 152.414 kb on + strand at 152.414 kb on + strand at 152.415 kb on - strand at 152.560 kb on + strand at 152.568 kb on + strand at 152.568 kb on + strand at 152.569 kb on - strand at 152.573 kb on + strand at 152.574 kb on - strand at 152.591 kb on + strand at 152.591 kb on + strand at 152.591 kb on + strand at 152.591 kb on + strand at 152.591 kb on + strand at 152.591 kb on + strand at 152.591 kb on + strand at 152.592 kb on - strand at 152.592 kb on - strand at 152.715 kb on - strand at 152.727 kb on + strand at 152.728 kb on - strand at 152.782 kb on + strand, within EX31_RS09745 at 152.783 kb on - strand, within EX31_RS09745 at 152.920 kb on + strand, within EX31_RS09745 at 152.921 kb on - strand, within EX31_RS09745 at 152.921 kb on - strand, within EX31_RS09745 at 152.949 kb on + strand, within EX31_RS09745 at 152.950 kb on - strand, within EX31_RS09745 at 152.950 kb on - strand, within EX31_RS09745 at 152.950 kb on - strand, within EX31_RS09745 at 152.950 kb on - strand, within EX31_RS09745 at 153.011 kb on + strand, within EX31_RS09745 at 153.051 kb on - strand, within EX31_RS09745 at 153.119 kb on + strand, within EX31_RS09745 at 153.494 kb on - strand, within EX31_RS09745 at 153.516 kb on + strand, within EX31_RS09745 at 153.517 kb on - strand, within EX31_RS09745 at 153.517 kb on - strand, within EX31_RS09745 at 153.517 kb on - strand, within EX31_RS09745 at 153.532 kb on + strand, within EX31_RS09745 at 153.533 kb on - strand, within EX31_RS09745 at 153.534 kb on + strand, within EX31_RS09745 at 153.534 kb on + strand, within EX31_RS09745 at 153.534 kb on + strand, within EX31_RS09745 at 153.534 kb on + strand, within EX31_RS09745 at 153.534 kb on + strand, within EX31_RS09745 at 153.535 kb on - strand, within EX31_RS09745 at 153.535 kb on - strand, within EX31_RS09745 at 153.535 kb on - strand, within EX31_RS09745 at 153.671 kb on - strand, within EX31_RS09745 at 153.680 kb on + strand, within EX31_RS09745 at 153.680 kb on + strand, within EX31_RS09745 at 153.791 kb on - strand at 153.851 kb on + strand at 153.852 kb on - strand at 153.857 kb on - strand at 153.874 kb on + strand at 153.907 kb on - strand at 153.924 kb on + strand at 153.924 kb on + strand at 153.925 kb on - strand at 153.925 kb on - strand at 153.925 kb on - strand at 153.925 kb on - strand at 153.928 kb on + strand at 153.935 kb on - strand at 153.935 kb on - strand at 153.935 kb on - strand at 153.939 kb on + strand at 153.971 kb on - strand at 153.971 kb on - strand at 154.010 kb on - strand at 154.075 kb on + strand at 154.075 kb on + strand at 154.093 kb on - strand at 154.380 kb on - strand, within EX31_RS09750 at 154.385 kb on - strand, within EX31_RS09750 at 154.385 kb on - strand, within EX31_RS09750 at 154.385 kb on - strand, within EX31_RS09750 at 154.385 kb on - strand, within EX31_RS09750 at 154.385 kb on - strand, within EX31_RS09750 at 154.388 kb on + strand, within EX31_RS09750 at 154.492 kb on + strand, within EX31_RS09750 at 154.638 kb on - strand, within EX31_RS09750 at 154.663 kb on + strand, within EX31_RS09750 at 154.664 kb on - strand, within EX31_RS09750 at 154.664 kb on - strand, within EX31_RS09750 at 154.664 kb on - strand, within EX31_RS09750 at 154.675 kb on - strand, within EX31_RS09750 at 154.675 kb on - strand, within EX31_RS09750 at 154.675 kb on - strand, within EX31_RS09750 at 154.675 kb on - strand, within EX31_RS09750 at 154.793 kb on - strand, within EX31_RS09750
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 151,655 - EX31_RS09740 0.61 +0.5 151,655 - EX31_RS09740 0.61 +0.2 151,815 + EX31_RS09740 0.67 +0.5 151,816 - EX31_RS09740 0.68 -1.3 151,896 + EX31_RS09740 0.71 +0.2 151,897 - EX31_RS09740 0.71 -0.9 151,897 - EX31_RS09740 0.71 +0.1 151,897 - EX31_RS09740 0.71 +0.2 152,052 + EX31_RS09740 0.78 +0.6 152,052 + EX31_RS09740 0.78 -1.8 152,067 + EX31_RS09740 0.78 +0.5 152,067 + EX31_RS09740 0.78 +0.3 152,067 + EX31_RS09740 0.78 -1.6 152,068 - EX31_RS09740 0.78 -0.1 152,069 + EX31_RS09740 0.78 -1.8 152,069 + EX31_RS09740 0.78 -0.5 152,069 + EX31_RS09740 0.78 +0.7 152,069 + EX31_RS09740 0.78 -0.2 152,069 + EX31_RS09740 0.78 +0.1 152,069 + EX31_RS09740 0.78 -1.0 152,069 + EX31_RS09740 0.78 +0.6 152,070 - EX31_RS09740 0.78 -1.0 152,070 - EX31_RS09740 0.78 +0.6 152,070 - EX31_RS09740 0.78 -1.5 152,070 - EX31_RS09740 0.78 +0.1 152,070 - EX31_RS09740 0.78 -0.8 152,131 - EX31_RS09740 0.81 +0.5 152,229 + EX31_RS09740 0.85 -0.5 152,229 + EX31_RS09740 0.85 -1.1 152,229 + EX31_RS09740 0.85 +0.4 152,230 - EX31_RS09740 0.85 -0.2 152,230 - EX31_RS09740 0.85 -1.4 152,230 - EX31_RS09740 0.85 +1.5 152,230 - EX31_RS09740 0.85 -0.6 152,230 - EX31_RS09740 0.85 -0.8 152,230 - EX31_RS09740 0.85 +1.3 152,264 + EX31_RS09740 0.87 -0.7 152,284 - EX31_RS09740 0.88 +0.2 152,289 + EX31_RS09740 0.88 -1.6 152,290 - EX31_RS09740 0.88 -1.4 152,411 - -1.4 152,414 + +1.0 152,414 + +0.2 152,414 + -1.1 152,414 + -0.8 152,414 + -0.5 152,415 - -0.9 152,560 + +0.2 152,568 + -0.6 152,568 + -1.3 152,569 - -0.9 152,573 + +0.2 152,574 - +0.3 152,591 + -0.0 152,591 + -1.4 152,591 + +1.9 152,591 + -0.4 152,591 + +0.6 152,591 + +0.4 152,591 + +1.1 152,592 - -1.6 152,592 - +0.7 152,715 - -0.5 152,727 + -0.1 152,728 - +1.5 152,782 + EX31_RS09745 0.12 -0.3 152,783 - EX31_RS09745 0.12 -0.2 152,920 + EX31_RS09745 0.24 +2.5 152,921 - EX31_RS09745 0.24 +1.0 152,921 - EX31_RS09745 0.24 -1.4 152,949 + EX31_RS09745 0.26 +1.3 152,950 - EX31_RS09745 0.26 +0.6 152,950 - EX31_RS09745 0.26 -0.9 152,950 - EX31_RS09745 0.26 -0.1 152,950 - EX31_RS09745 0.26 -0.6 153,011 + EX31_RS09745 0.31 +1.1 153,051 - EX31_RS09745 0.35 +2.7 153,119 + EX31_RS09745 0.40 +0.8 153,494 - EX31_RS09745 0.72 +0.1 153,516 + EX31_RS09745 0.74 +0.4 153,517 - EX31_RS09745 0.74 +0.1 153,517 - EX31_RS09745 0.74 -1.0 153,517 - EX31_RS09745 0.74 +0.8 153,532 + EX31_RS09745 0.75 -0.5 153,533 - EX31_RS09745 0.75 +1.4 153,534 + EX31_RS09745 0.75 -0.4 153,534 + EX31_RS09745 0.75 +0.5 153,534 + EX31_RS09745 0.75 +0.8 153,534 + EX31_RS09745 0.75 +0.9 153,534 + EX31_RS09745 0.75 -0.4 153,535 - EX31_RS09745 0.75 -0.7 153,535 - EX31_RS09745 0.75 +1.6 153,535 - EX31_RS09745 0.75 +0.9 153,671 - EX31_RS09745 0.87 +0.3 153,680 + EX31_RS09745 0.88 +0.7 153,680 + EX31_RS09745 0.88 +0.4 153,791 - +2.1 153,851 + +0.2 153,852 - +0.3 153,857 - +0.0 153,874 + +0.1 153,907 - +0.9 153,924 + -0.2 153,924 + -0.1 153,925 - +0.1 153,925 - +0.5 153,925 - +0.7 153,925 - +0.4 153,928 + -0.5 153,935 - +0.8 153,935 - +1.3 153,935 - -0.6 153,939 + +0.9 153,971 - -2.4 153,971 - -1.1 154,010 - +0.7 154,075 + -1.6 154,075 + +1.2 154,093 - -0.3 154,380 - EX31_RS09750 0.31 +0.4 154,385 - EX31_RS09750 0.31 -1.8 154,385 - EX31_RS09750 0.31 +0.7 154,385 - EX31_RS09750 0.31 +0.8 154,385 - EX31_RS09750 0.31 +1.1 154,385 - EX31_RS09750 0.31 -0.1 154,388 + EX31_RS09750 0.32 +0.0 154,492 + EX31_RS09750 0.40 -0.0 154,638 - EX31_RS09750 0.53 -0.2 154,663 + EX31_RS09750 0.55 -0.2 154,664 - EX31_RS09750 0.55 -0.2 154,664 - EX31_RS09750 0.55 +0.4 154,664 - EX31_RS09750 0.55 +0.1 154,675 - EX31_RS09750 0.56 -1.7 154,675 - EX31_RS09750 0.56 -0.7 154,675 - EX31_RS09750 0.56 -0.2 154,675 - EX31_RS09750 0.56 +1.4 154,793 - EX31_RS09750 0.65 +0.3
Or see this region's nucleotide sequence