Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01860 and EX31_RS01865 overlap by 4 nucleotides EX31_RS01865 and EX31_RS01870 are separated by 3 nucleotides
EX31_RS01860: EX31_RS01860 - type VI secretion system baseplate subunit TssK, at 402,192 to 403,529
_RS01860
EX31_RS01865: EX31_RS01865 - DotU family type IV/VI secretion system protein, at 403,526 to 404,179
_RS01865
EX31_RS01870: EX31_RS01870 - OmpA family protein, at 404,183 to 405,877
_RS01870
Position (kb) 403
404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 402.694 kb on + strand, within EX31_RS01860 at 402.694 kb on + strand, within EX31_RS01860 at 402.694 kb on + strand, within EX31_RS01860 at 402.694 kb on + strand, within EX31_RS01860 at 402.695 kb on - strand, within EX31_RS01860 at 402.695 kb on - strand, within EX31_RS01860 at 402.695 kb on - strand, within EX31_RS01860 at 402.695 kb on - strand, within EX31_RS01860 at 402.695 kb on - strand, within EX31_RS01860 at 402.802 kb on + strand, within EX31_RS01860 at 402.892 kb on + strand, within EX31_RS01860 at 402.892 kb on + strand, within EX31_RS01860 at 402.892 kb on + strand, within EX31_RS01860 at 402.892 kb on + strand, within EX31_RS01860 at 402.893 kb on - strand, within EX31_RS01860 at 402.893 kb on - strand, within EX31_RS01860 at 402.893 kb on - strand, within EX31_RS01860 at 402.984 kb on + strand, within EX31_RS01860 at 403.037 kb on + strand, within EX31_RS01860 at 403.038 kb on - strand, within EX31_RS01860 at 403.059 kb on + strand, within EX31_RS01860 at 403.068 kb on - strand, within EX31_RS01860 at 403.068 kb on - strand, within EX31_RS01860 at 403.143 kb on - strand, within EX31_RS01860 at 403.143 kb on - strand, within EX31_RS01860 at 403.143 kb on - strand, within EX31_RS01860 at 403.370 kb on - strand, within EX31_RS01860 at 403.471 kb on - strand at 403.471 kb on - strand at 403.507 kb on + strand at 403.507 kb on + strand at 403.507 kb on + strand at 403.507 kb on + strand at 403.699 kb on + strand, within EX31_RS01865 at 403.700 kb on - strand, within EX31_RS01865 at 403.700 kb on - strand, within EX31_RS01865 at 403.719 kb on - strand, within EX31_RS01865 at 403.721 kb on - strand, within EX31_RS01865 at 403.721 kb on - strand, within EX31_RS01865 at 403.735 kb on - strand, within EX31_RS01865 at 403.737 kb on + strand, within EX31_RS01865 at 403.737 kb on + strand, within EX31_RS01865 at 403.749 kb on + strand, within EX31_RS01865 at 403.750 kb on - strand, within EX31_RS01865 at 403.753 kb on + strand, within EX31_RS01865 at 403.754 kb on - strand, within EX31_RS01865 at 403.814 kb on + strand, within EX31_RS01865 at 403.856 kb on - strand, within EX31_RS01865 at 403.910 kb on + strand, within EX31_RS01865 at 403.989 kb on + strand, within EX31_RS01865 at 403.990 kb on - strand, within EX31_RS01865 at 404.130 kb on + strand at 404.130 kb on + strand at 404.135 kb on - strand at 404.135 kb on - strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.150 kb on - strand at 404.150 kb on - strand at 404.150 kb on - strand at 404.150 kb on - strand at 404.194 kb on - strand at 404.202 kb on + strand at 404.203 kb on - strand at 404.203 kb on - strand at 404.205 kb on + strand at 404.318 kb on - strand at 404.339 kb on - strand at 404.363 kb on + strand, within EX31_RS01870 at 404.364 kb on - strand, within EX31_RS01870 at 404.371 kb on + strand, within EX31_RS01870 at 404.372 kb on - strand, within EX31_RS01870 at 404.372 kb on - strand, within EX31_RS01870 at 404.489 kb on + strand, within EX31_RS01870 at 404.611 kb on + strand, within EX31_RS01870 at 404.756 kb on - strand, within EX31_RS01870 at 404.774 kb on - strand, within EX31_RS01870 at 404.812 kb on - strand, within EX31_RS01870 at 404.842 kb on + strand, within EX31_RS01870 at 405.030 kb on + strand, within EX31_RS01870 at 405.030 kb on + strand, within EX31_RS01870 at 405.030 kb on + strand, within EX31_RS01870 at 405.031 kb on - strand, within EX31_RS01870 at 405.031 kb on - strand, within EX31_RS01870 at 405.043 kb on + strand, within EX31_RS01870 at 405.107 kb on + strand, within EX31_RS01870 at 405.168 kb on + strand, within EX31_RS01870 at 405.169 kb on - strand, within EX31_RS01870
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 402,694 + EX31_RS01860 0.38 -1.1 402,694 + EX31_RS01860 0.38 -0.6 402,694 + EX31_RS01860 0.38 +0.6 402,694 + EX31_RS01860 0.38 -0.3 402,695 - EX31_RS01860 0.38 +0.6 402,695 - EX31_RS01860 0.38 +1.2 402,695 - EX31_RS01860 0.38 -1.5 402,695 - EX31_RS01860 0.38 -1.2 402,695 - EX31_RS01860 0.38 +0.3 402,802 + EX31_RS01860 0.46 +0.3 402,892 + EX31_RS01860 0.52 +0.9 402,892 + EX31_RS01860 0.52 +0.8 402,892 + EX31_RS01860 0.52 +0.2 402,892 + EX31_RS01860 0.52 +1.1 402,893 - EX31_RS01860 0.52 -2.4 402,893 - EX31_RS01860 0.52 +0.4 402,893 - EX31_RS01860 0.52 +0.1 402,984 + EX31_RS01860 0.59 -0.3 403,037 + EX31_RS01860 0.63 -1.2 403,038 - EX31_RS01860 0.63 +0.5 403,059 + EX31_RS01860 0.65 +0.9 403,068 - EX31_RS01860 0.65 -0.2 403,068 - EX31_RS01860 0.65 +0.0 403,143 - EX31_RS01860 0.71 -0.4 403,143 - EX31_RS01860 0.71 +0.5 403,143 - EX31_RS01860 0.71 +0.0 403,370 - EX31_RS01860 0.88 -0.4 403,471 - -1.4 403,471 - +0.6 403,507 + -0.0 403,507 + +0.0 403,507 + -0.0 403,507 + +0.8 403,699 + EX31_RS01865 0.26 +1.3 403,700 - EX31_RS01865 0.27 -0.3 403,700 - EX31_RS01865 0.27 -0.9 403,719 - EX31_RS01865 0.30 -0.4 403,721 - EX31_RS01865 0.30 -1.0 403,721 - EX31_RS01865 0.30 -1.3 403,735 - EX31_RS01865 0.32 -0.3 403,737 + EX31_RS01865 0.32 -0.3 403,737 + EX31_RS01865 0.32 -0.9 403,749 + EX31_RS01865 0.34 -0.9 403,750 - EX31_RS01865 0.34 +0.8 403,753 + EX31_RS01865 0.35 +1.0 403,754 - EX31_RS01865 0.35 -0.3 403,814 + EX31_RS01865 0.44 +0.3 403,856 - EX31_RS01865 0.50 +0.1 403,910 + EX31_RS01865 0.59 -2.9 403,989 + EX31_RS01865 0.71 -0.7 403,990 - EX31_RS01865 0.71 -1.3 404,130 + +0.2 404,130 + -0.3 404,135 - -0.4 404,135 - +1.7 404,149 + +0.3 404,149 + -0.7 404,149 + +0.7 404,149 + -0.4 404,149 + -0.6 404,149 + +0.4 404,149 + -1.8 404,149 + -0.6 404,149 + -0.7 404,149 + -0.3 404,150 - +1.0 404,150 - +1.0 404,150 - +0.6 404,150 - -1.3 404,194 - -1.0 404,202 + -0.4 404,203 - -0.8 404,203 - -0.4 404,205 + -0.4 404,318 - +0.2 404,339 - +0.2 404,363 + EX31_RS01870 0.11 +0.0 404,364 - EX31_RS01870 0.11 -0.1 404,371 + EX31_RS01870 0.11 -0.4 404,372 - EX31_RS01870 0.11 +0.7 404,372 - EX31_RS01870 0.11 -0.1 404,489 + EX31_RS01870 0.18 -0.1 404,611 + EX31_RS01870 0.25 -0.6 404,756 - EX31_RS01870 0.34 -0.5 404,774 - EX31_RS01870 0.35 +0.7 404,812 - EX31_RS01870 0.37 -1.0 404,842 + EX31_RS01870 0.39 -2.0 405,030 + EX31_RS01870 0.50 -0.9 405,030 + EX31_RS01870 0.50 -0.5 405,030 + EX31_RS01870 0.50 +0.8 405,031 - EX31_RS01870 0.50 -0.3 405,031 - EX31_RS01870 0.50 -0.2 405,043 + EX31_RS01870 0.51 -0.1 405,107 + EX31_RS01870 0.55 +0.1 405,168 + EX31_RS01870 0.58 +0.4 405,169 - EX31_RS01870 0.58 +0.3
Or see this region's nucleotide sequence