Strain Fitness in Rahnella sp. WP5 around EX31_RS00695

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00690 and EX31_RS00695 are separated by 94 nucleotidesEX31_RS00695 and EX31_RS00700 are separated by 18 nucleotidesEX31_RS00700 and EX31_RS00705 overlap by 4 nucleotides EX31_RS00690: EX31_RS00690 - ABC transporter substrate-binding protein, at 145,725 to 147,269 _RS00690 EX31_RS00695: EX31_RS00695 - ABC transporter permease, at 147,364 to 148,302 _RS00695 EX31_RS00700: EX31_RS00700 - ABC transporter permease, at 148,321 to 149,136 _RS00700 EX31_RS00705: EX31_RS00705 - ABC transporter ATP-binding protein, at 149,133 to 150,722 _RS00705 Position (kb) 147 148 149Strain fitness (log2 ratio) -1 0 1 2at 146.364 kb on + strand, within EX31_RS00690at 146.365 kb on - strand, within EX31_RS00690at 146.365 kb on - strand, within EX31_RS00690at 146.507 kb on + strand, within EX31_RS00690at 146.508 kb on - strand, within EX31_RS00690at 146.543 kb on + strand, within EX31_RS00690at 146.543 kb on + strand, within EX31_RS00690at 146.543 kb on + strand, within EX31_RS00690at 146.550 kb on + strand, within EX31_RS00690at 146.550 kb on + strand, within EX31_RS00690at 146.551 kb on - strand, within EX31_RS00690at 146.552 kb on + strand, within EX31_RS00690at 146.616 kb on + strand, within EX31_RS00690at 146.617 kb on - strand, within EX31_RS00690at 146.681 kb on + strand, within EX31_RS00690at 146.736 kb on + strand, within EX31_RS00690at 146.737 kb on - strand, within EX31_RS00690at 146.921 kb on + strand, within EX31_RS00690at 146.921 kb on + strand, within EX31_RS00690at 146.921 kb on + strand, within EX31_RS00690at 147.105 kb on + strand, within EX31_RS00690at 147.105 kb on + strand, within EX31_RS00690at 147.159 kb on + strandat 147.160 kb on - strandat 147.160 kb on - strandat 147.282 kb on + strandat 147.282 kb on + strandat 147.283 kb on - strandat 147.293 kb on + strandat 147.734 kb on + strand, within EX31_RS00695at 147.735 kb on - strand, within EX31_RS00695at 147.741 kb on + strand, within EX31_RS00695at 147.741 kb on + strand, within EX31_RS00695at 147.855 kb on + strand, within EX31_RS00695at 147.855 kb on + strand, within EX31_RS00695at 147.856 kb on - strand, within EX31_RS00695at 147.868 kb on - strand, within EX31_RS00695at 147.940 kb on - strand, within EX31_RS00695at 147.988 kb on + strand, within EX31_RS00695at 147.988 kb on + strand, within EX31_RS00695at 147.988 kb on + strand, within EX31_RS00695at 147.988 kb on + strand, within EX31_RS00695at 147.989 kb on - strand, within EX31_RS00695at 147.989 kb on - strand, within EX31_RS00695at 147.989 kb on - strand, within EX31_RS00695at 147.989 kb on - strand, within EX31_RS00695at 148.047 kb on - strand, within EX31_RS00695at 148.047 kb on - strand, within EX31_RS00695at 148.133 kb on + strand, within EX31_RS00695at 148.133 kb on + strand, within EX31_RS00695at 148.133 kb on + strand, within EX31_RS00695at 148.134 kb on - strand, within EX31_RS00695at 148.134 kb on - strand, within EX31_RS00695at 148.159 kb on + strand, within EX31_RS00695at 148.159 kb on + strand, within EX31_RS00695at 148.159 kb on + strand, within EX31_RS00695at 148.159 kb on + strand, within EX31_RS00695at 148.159 kb on + strand, within EX31_RS00695at 148.159 kb on + strand, within EX31_RS00695at 148.159 kb on + strand, within EX31_RS00695at 148.159 kb on + strand, within EX31_RS00695at 148.160 kb on - strand, within EX31_RS00695at 148.160 kb on - strand, within EX31_RS00695at 148.160 kb on - strand, within EX31_RS00695at 148.231 kb on + strandat 148.232 kb on - strandat 148.232 kb on - strandat 148.232 kb on - strandat 148.309 kb on - strandat 148.346 kb on + strandat 148.346 kb on + strandat 148.374 kb on + strandat 148.479 kb on + strand, within EX31_RS00700at 148.578 kb on + strand, within EX31_RS00700at 148.579 kb on - strand, within EX31_RS00700at 148.579 kb on - strand, within EX31_RS00700at 148.956 kb on + strand, within EX31_RS00700at 149.146 kb on + strandat 149.146 kb on + strandat 149.146 kb on + strandat 149.146 kb on + strandat 149.147 kb on - strandat 149.147 kb on - strandat 149.147 kb on - strandat 149.166 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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146,364 + EX31_RS00690 0.41 +1.0
146,365 - EX31_RS00690 0.41 -0.4
146,365 - EX31_RS00690 0.41 +0.4
146,507 + EX31_RS00690 0.51 +0.3
146,508 - EX31_RS00690 0.51 -0.4
146,543 + EX31_RS00690 0.53 -1.2
146,543 + EX31_RS00690 0.53 +0.0
146,543 + EX31_RS00690 0.53 -1.5
146,550 + EX31_RS00690 0.53 +0.8
146,550 + EX31_RS00690 0.53 +0.3
146,551 - EX31_RS00690 0.53 -0.6
146,552 + EX31_RS00690 0.54 +0.1
146,616 + EX31_RS00690 0.58 -0.5
146,617 - EX31_RS00690 0.58 +0.5
146,681 + EX31_RS00690 0.62 -0.7
146,736 + EX31_RS00690 0.65 -0.4
146,737 - EX31_RS00690 0.66 -0.4
146,921 + EX31_RS00690 0.77 -0.6
146,921 + EX31_RS00690 0.77 +0.0
146,921 + EX31_RS00690 0.77 +1.4
147,105 + EX31_RS00690 0.89 -0.0
147,105 + EX31_RS00690 0.89 +0.5
147,159 + +0.5
147,160 - +0.5
147,160 - -0.1
147,282 + -0.1
147,282 + -0.8
147,283 - +0.1
147,293 + +0.7
147,734 + EX31_RS00695 0.39 -0.5
147,735 - EX31_RS00695 0.40 +0.0
147,741 + EX31_RS00695 0.40 -1.4
147,741 + EX31_RS00695 0.40 -1.5
147,855 + EX31_RS00695 0.52 -0.5
147,855 + EX31_RS00695 0.52 -1.0
147,856 - EX31_RS00695 0.52 -0.7
147,868 - EX31_RS00695 0.54 -0.0
147,940 - EX31_RS00695 0.61 +1.0
147,988 + EX31_RS00695 0.66 +1.8
147,988 + EX31_RS00695 0.66 -0.0
147,988 + EX31_RS00695 0.66 -0.3
147,988 + EX31_RS00695 0.66 +0.1
147,989 - EX31_RS00695 0.67 +0.4
147,989 - EX31_RS00695 0.67 -0.0
147,989 - EX31_RS00695 0.67 +0.1
147,989 - EX31_RS00695 0.67 +0.0
148,047 - EX31_RS00695 0.73 +0.0
148,047 - EX31_RS00695 0.73 -0.1
148,133 + EX31_RS00695 0.82 +0.5
148,133 + EX31_RS00695 0.82 -0.6
148,133 + EX31_RS00695 0.82 -1.0
148,134 - EX31_RS00695 0.82 -1.1
148,134 - EX31_RS00695 0.82 -1.0
148,159 + EX31_RS00695 0.85 -0.6
148,159 + EX31_RS00695 0.85 +0.9
148,159 + EX31_RS00695 0.85 -0.7
148,159 + EX31_RS00695 0.85 -1.4
148,159 + EX31_RS00695 0.85 +0.7
148,159 + EX31_RS00695 0.85 +0.9
148,159 + EX31_RS00695 0.85 +0.3
148,159 + EX31_RS00695 0.85 +1.0
148,160 - EX31_RS00695 0.85 -0.2
148,160 - EX31_RS00695 0.85 +0.2
148,160 - EX31_RS00695 0.85 +0.7
148,231 + -0.5
148,232 - +0.2
148,232 - -0.2
148,232 - +0.6
148,309 - -0.3
148,346 + +1.3
148,346 + -0.3
148,374 + +1.9
148,479 + EX31_RS00700 0.19 -0.8
148,578 + EX31_RS00700 0.31 +0.8
148,579 - EX31_RS00700 0.32 +0.8
148,579 - EX31_RS00700 0.32 -0.3
148,956 + EX31_RS00700 0.78 -0.3
149,146 + -0.4
149,146 + -0.2
149,146 + +1.7
149,146 + +0.3
149,147 - +0.1
149,147 - +0.2
149,147 - +1.4
149,166 + -0.4

Or see this region's nucleotide sequence