Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07480 and EX31_RS25965 are separated by 39 nucleotides EX31_RS25965 and EX31_RS07485 are separated by 359 nucleotides
EX31_RS07480: EX31_RS07480 - flavocytochrome c, at 307,416 to 310,193
_RS07480
EX31_RS25965: EX31_RS25965 - hypothetical protein, at 310,233 to 310,412
_RS25965
EX31_RS07485: EX31_RS07485 - anion permease, at 310,772 to 312,283
_RS07485
Position (kb) 310
311 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 309.425 kb on - strand, within EX31_RS07480 at 309.425 kb on - strand, within EX31_RS07480 at 309.425 kb on - strand, within EX31_RS07480 at 309.425 kb on - strand, within EX31_RS07480 at 309.425 kb on - strand, within EX31_RS07480 at 309.425 kb on - strand, within EX31_RS07480 at 309.460 kb on + strand, within EX31_RS07480 at 309.460 kb on + strand, within EX31_RS07480 at 309.460 kb on + strand, within EX31_RS07480 at 309.461 kb on - strand, within EX31_RS07480 at 309.461 kb on - strand, within EX31_RS07480 at 309.461 kb on - strand, within EX31_RS07480 at 309.670 kb on + strand, within EX31_RS07480 at 309.670 kb on + strand, within EX31_RS07480 at 309.671 kb on - strand, within EX31_RS07480 at 309.671 kb on - strand, within EX31_RS07480 at 309.714 kb on - strand, within EX31_RS07480 at 309.836 kb on + strand, within EX31_RS07480 at 309.837 kb on - strand, within EX31_RS07480 at 309.881 kb on - strand, within EX31_RS07480 at 309.881 kb on - strand, within EX31_RS07480 at 309.881 kb on - strand, within EX31_RS07480 at 309.914 kb on + strand, within EX31_RS07480 at 309.915 kb on - strand, within EX31_RS07480 at 310.004 kb on + strand at 310.005 kb on - strand at 310.057 kb on + strand at 310.058 kb on - strand at 310.058 kb on - strand at 310.058 kb on - strand at 310.091 kb on - strand at 310.187 kb on + strand at 310.195 kb on - strand at 310.216 kb on - strand at 310.244 kb on - strand at 310.244 kb on - strand at 310.262 kb on - strand, within EX31_RS25965 at 310.267 kb on + strand, within EX31_RS25965 at 310.268 kb on - strand, within EX31_RS25965 at 310.268 kb on - strand, within EX31_RS25965 at 310.268 kb on - strand, within EX31_RS25965 at 310.271 kb on + strand, within EX31_RS25965 at 310.294 kb on - strand, within EX31_RS25965 at 310.311 kb on - strand, within EX31_RS25965 at 310.316 kb on - strand, within EX31_RS25965 at 310.345 kb on + strand, within EX31_RS25965 at 310.346 kb on - strand, within EX31_RS25965 at 310.346 kb on - strand, within EX31_RS25965 at 310.346 kb on - strand, within EX31_RS25965 at 310.507 kb on + strand at 310.512 kb on + strand at 310.522 kb on + strand at 310.531 kb on + strand at 310.563 kb on - strand at 310.579 kb on + strand at 310.579 kb on + strand at 310.580 kb on - strand at 310.581 kb on + strand at 310.582 kb on - strand at 310.592 kb on - strand at 310.614 kb on + strand at 310.615 kb on - strand at 310.620 kb on + strand at 310.621 kb on - strand at 310.623 kb on + strand at 310.628 kb on + strand at 310.677 kb on + strand at 310.846 kb on + strand at 310.847 kb on - strand at 310.847 kb on - strand at 310.881 kb on + strand at 311.152 kb on + strand, within EX31_RS07485 at 311.152 kb on + strand, within EX31_RS07485 at 311.174 kb on - strand, within EX31_RS07485 at 311.241 kb on + strand, within EX31_RS07485 at 311.241 kb on + strand, within EX31_RS07485 at 311.241 kb on + strand, within EX31_RS07485 at 311.241 kb on + strand, within EX31_RS07485 at 311.242 kb on - strand, within EX31_RS07485 at 311.351 kb on + strand, within EX31_RS07485 at 311.351 kb on + strand, within EX31_RS07485 at 311.352 kb on - strand, within EX31_RS07485 at 311.396 kb on + strand, within EX31_RS07485 at 311.397 kb on - strand, within EX31_RS07485 at 311.397 kb on - strand, within EX31_RS07485
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 309,425 - EX31_RS07480 0.72 +0.2 309,425 - EX31_RS07480 0.72 -1.1 309,425 - EX31_RS07480 0.72 +0.3 309,425 - EX31_RS07480 0.72 +0.2 309,425 - EX31_RS07480 0.72 +0.9 309,425 - EX31_RS07480 0.72 +1.1 309,460 + EX31_RS07480 0.74 +0.2 309,460 + EX31_RS07480 0.74 +1.1 309,460 + EX31_RS07480 0.74 -0.6 309,461 - EX31_RS07480 0.74 +0.3 309,461 - EX31_RS07480 0.74 +0.1 309,461 - EX31_RS07480 0.74 -2.2 309,670 + EX31_RS07480 0.81 -0.5 309,670 + EX31_RS07480 0.81 -0.2 309,671 - EX31_RS07480 0.81 +0.0 309,671 - EX31_RS07480 0.81 -0.3 309,714 - EX31_RS07480 0.83 +0.6 309,836 + EX31_RS07480 0.87 +0.7 309,837 - EX31_RS07480 0.87 -0.1 309,881 - EX31_RS07480 0.89 +0.1 309,881 - EX31_RS07480 0.89 +0.2 309,881 - EX31_RS07480 0.89 +0.3 309,914 + EX31_RS07480 0.90 +2.9 309,915 - EX31_RS07480 0.90 -0.5 310,004 + -1.2 310,005 - -0.1 310,057 + -2.2 310,058 - -0.1 310,058 - +0.8 310,058 - -0.7 310,091 - -0.8 310,187 + +0.1 310,195 - +1.4 310,216 - -0.9 310,244 - -2.6 310,244 - -0.2 310,262 - EX31_RS25965 0.16 -0.1 310,267 + EX31_RS25965 0.19 +0.1 310,268 - EX31_RS25965 0.19 -1.7 310,268 - EX31_RS25965 0.19 -0.1 310,268 - EX31_RS25965 0.19 -0.5 310,271 + EX31_RS25965 0.21 -0.7 310,294 - EX31_RS25965 0.34 -1.8 310,311 - EX31_RS25965 0.43 -0.3 310,316 - EX31_RS25965 0.46 -0.2 310,345 + EX31_RS25965 0.62 -1.0 310,346 - EX31_RS25965 0.63 +0.3 310,346 - EX31_RS25965 0.63 -2.5 310,346 - EX31_RS25965 0.63 -0.2 310,507 + -2.1 310,512 + +0.3 310,522 + -1.6 310,531 + -1.7 310,563 - -1.8 310,579 + -0.9 310,579 + -0.3 310,580 - +1.3 310,581 + +0.2 310,582 - +0.3 310,592 - -1.3 310,614 + +0.4 310,615 - -0.6 310,620 + -0.9 310,621 - -0.5 310,623 + +0.4 310,628 + -0.8 310,677 + +0.9 310,846 + -0.5 310,847 - -0.2 310,847 - +0.5 310,881 + +0.3 311,152 + EX31_RS07485 0.25 +1.8 311,152 + EX31_RS07485 0.25 -0.6 311,174 - EX31_RS07485 0.27 +0.1 311,241 + EX31_RS07485 0.31 -0.1 311,241 + EX31_RS07485 0.31 -0.9 311,241 + EX31_RS07485 0.31 +1.2 311,241 + EX31_RS07485 0.31 -0.9 311,242 - EX31_RS07485 0.31 -0.7 311,351 + EX31_RS07485 0.38 -0.5 311,351 + EX31_RS07485 0.38 +0.2 311,352 - EX31_RS07485 0.38 +0.8 311,396 + EX31_RS07485 0.41 +0.5 311,397 - EX31_RS07485 0.41 +0.1 311,397 - EX31_RS07485 0.41 +0.1
Or see this region's nucleotide sequence