Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24145 and EX31_RS24150 overlap by 29 nucleotides EX31_RS24150 and EX31_RS24155 are separated by 56 nucleotides EX31_RS24155 and EX31_RS24160 are separated by 148 nucleotides EX31_RS24160 and EX31_RS24165 are separated by 58 nucleotides EX31_RS24165 and EX31_RS24170 are separated by 11 nucleotides
EX31_RS24145: EX31_RS24145 - UvrY/SirA/GacA family response regulator transcription factor, at 601,429 to 602,085
_RS24145
EX31_RS24150: EX31_RS24150 - excinuclease ABC subunit UvrC, at 602,057 to 603,913
_RS24150
EX31_RS24155: EX31_RS24155 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 603,970 to 604,518
_RS24155
EX31_RS24160: EX31_RS24160 - tRNA-Gly, at 604,667 to 604,742
_RS24160
EX31_RS24165: EX31_RS24165 - tRNA-Cys, at 604,801 to 604,874
_RS24165
EX31_RS24170: EX31_RS24170 - tRNA-Leu, at 604,886 to 604,971
_RS24170
Position (kb) 602
603
604 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 601.098 kb on + strand at 601.112 kb on + strand at 601.124 kb on - strand at 601.126 kb on + strand at 601.138 kb on + strand at 601.163 kb on + strand at 601.164 kb on - strand at 601.206 kb on + strand at 601.206 kb on + strand at 601.207 kb on - strand at 601.220 kb on + strand at 601.225 kb on + strand at 601.225 kb on + strand at 601.229 kb on + strand at 601.283 kb on + strand at 601.283 kb on + strand at 601.283 kb on + strand at 601.290 kb on + strand at 601.301 kb on + strand at 601.301 kb on + strand at 601.301 kb on + strand at 601.302 kb on - strand at 601.323 kb on + strand at 601.323 kb on + strand at 601.323 kb on + strand at 601.323 kb on + strand at 601.323 kb on + strand at 601.323 kb on + strand at 601.324 kb on - strand at 601.324 kb on - strand at 601.325 kb on + strand at 601.325 kb on + strand at 601.325 kb on + strand at 601.326 kb on - strand at 601.362 kb on + strand at 601.362 kb on + strand at 601.362 kb on + strand at 601.362 kb on + strand at 601.362 kb on + strand at 601.362 kb on + strand at 601.362 kb on + strand at 601.362 kb on + strand at 601.362 kb on + strand at 601.368 kb on + strand at 601.368 kb on + strand at 601.372 kb on + strand at 601.678 kb on + strand, within EX31_RS24145 at 601.678 kb on + strand, within EX31_RS24145 at 601.678 kb on + strand, within EX31_RS24145 at 601.798 kb on + strand, within EX31_RS24145 at 601.798 kb on + strand, within EX31_RS24145 at 601.799 kb on - strand, within EX31_RS24145 at 601.800 kb on + strand, within EX31_RS24145 at 601.800 kb on + strand, within EX31_RS24145 at 601.889 kb on + strand, within EX31_RS24145 at 601.911 kb on + strand, within EX31_RS24145 at 601.911 kb on + strand, within EX31_RS24145 at 601.968 kb on + strand, within EX31_RS24145 at 601.968 kb on + strand, within EX31_RS24145 at 602.024 kb on + strand at 602.150 kb on + strand at 602.150 kb on + strand at 602.150 kb on + strand at 602.151 kb on - strand at 602.151 kb on - strand at 602.151 kb on - strand at 602.169 kb on + strand at 602.169 kb on + strand at 602.169 kb on + strand at 602.169 kb on + strand at 602.170 kb on - strand at 602.174 kb on + strand at 602.174 kb on + strand at 602.174 kb on + strand at 602.175 kb on - strand at 602.175 kb on - strand at 602.178 kb on + strand at 602.178 kb on + strand at 602.178 kb on + strand at 602.178 kb on + strand at 602.178 kb on + strand at 602.179 kb on - strand at 602.179 kb on - strand at 602.179 kb on - strand at 602.179 kb on - strand at 602.179 kb on - strand at 602.179 kb on - strand at 602.182 kb on + strand at 602.183 kb on - strand at 602.326 kb on + strand, within EX31_RS24150 at 602.326 kb on + strand, within EX31_RS24150 at 602.326 kb on + strand, within EX31_RS24150 at 602.330 kb on + strand, within EX31_RS24150 at 602.330 kb on + strand, within EX31_RS24150 at 602.330 kb on + strand, within EX31_RS24150 at 602.330 kb on + strand, within EX31_RS24150 at 602.330 kb on + strand, within EX31_RS24150 at 602.330 kb on + strand, within EX31_RS24150 at 602.330 kb on + strand, within EX31_RS24150 at 602.330 kb on + strand, within EX31_RS24150 at 602.331 kb on - strand, within EX31_RS24150 at 602.331 kb on - strand, within EX31_RS24150 at 602.331 kb on - strand, within EX31_RS24150 at 602.331 kb on - strand, within EX31_RS24150 at 602.331 kb on - strand, within EX31_RS24150 at 602.331 kb on - strand, within EX31_RS24150 at 602.331 kb on - strand, within EX31_RS24150 at 602.354 kb on + strand, within EX31_RS24150 at 602.356 kb on + strand, within EX31_RS24150 at 602.356 kb on + strand, within EX31_RS24150 at 602.356 kb on + strand, within EX31_RS24150 at 602.356 kb on + strand, within EX31_RS24150 at 602.356 kb on + strand, within EX31_RS24150 at 602.357 kb on - strand, within EX31_RS24150 at 602.361 kb on + strand, within EX31_RS24150 at 602.361 kb on + strand, within EX31_RS24150 at 602.361 kb on + strand, within EX31_RS24150 at 602.361 kb on + strand, within EX31_RS24150 at 602.361 kb on + strand, within EX31_RS24150 at 602.361 kb on + strand, within EX31_RS24150 at 602.362 kb on - strand, within EX31_RS24150 at 602.362 kb on - strand, within EX31_RS24150 at 602.362 kb on - strand, within EX31_RS24150 at 602.377 kb on + strand, within EX31_RS24150 at 602.378 kb on - strand, within EX31_RS24150 at 602.443 kb on + strand, within EX31_RS24150 at 602.443 kb on + strand, within EX31_RS24150 at 602.443 kb on + strand, within EX31_RS24150 at 602.444 kb on - strand, within EX31_RS24150 at 602.444 kb on - strand, within EX31_RS24150 at 602.479 kb on + strand, within EX31_RS24150 at 602.479 kb on + strand, within EX31_RS24150 at 602.486 kb on + strand, within EX31_RS24150 at 602.487 kb on - strand, within EX31_RS24150 at 602.487 kb on - strand, within EX31_RS24150 at 602.553 kb on + strand, within EX31_RS24150 at 602.553 kb on + strand, within EX31_RS24150 at 602.553 kb on + strand, within EX31_RS24150 at 602.553 kb on + strand, within EX31_RS24150 at 602.553 kb on + strand, within EX31_RS24150 at 602.553 kb on + strand, within EX31_RS24150 at 602.554 kb on - strand, within EX31_RS24150 at 602.555 kb on + strand, within EX31_RS24150 at 602.555 kb on + strand, within EX31_RS24150 at 602.556 kb on - strand, within EX31_RS24150 at 602.586 kb on - strand, within EX31_RS24150 at 602.642 kb on + strand, within EX31_RS24150 at 602.643 kb on - strand, within EX31_RS24150 at 602.644 kb on + strand, within EX31_RS24150 at 602.644 kb on + strand, within EX31_RS24150 at 602.644 kb on + strand, within EX31_RS24150 at 602.644 kb on + strand, within EX31_RS24150 at 602.644 kb on + strand, within EX31_RS24150 at 602.660 kb on + strand, within EX31_RS24150 at 602.660 kb on + strand, within EX31_RS24150 at 602.660 kb on + strand, within EX31_RS24150 at 602.661 kb on - strand, within EX31_RS24150 at 602.734 kb on + strand, within EX31_RS24150 at 602.735 kb on - strand, within EX31_RS24150 at 602.787 kb on + strand, within EX31_RS24150 at 602.787 kb on + strand, within EX31_RS24150 at 602.991 kb on - strand, within EX31_RS24150 at 603.257 kb on - strand, within EX31_RS24150 at 603.286 kb on + strand, within EX31_RS24150 at 603.286 kb on + strand, within EX31_RS24150 at 603.286 kb on + strand, within EX31_RS24150 at 603.287 kb on - strand, within EX31_RS24150 at 603.287 kb on - strand, within EX31_RS24150 at 603.289 kb on + strand, within EX31_RS24150 at 603.289 kb on + strand, within EX31_RS24150 at 603.290 kb on - strand, within EX31_RS24150 at 603.353 kb on + strand, within EX31_RS24150 at 603.363 kb on - strand, within EX31_RS24150 at 603.432 kb on + strand, within EX31_RS24150 at 603.433 kb on + strand, within EX31_RS24150 at 603.433 kb on + strand, within EX31_RS24150 at 603.434 kb on - strand, within EX31_RS24150 at 603.434 kb on - strand, within EX31_RS24150 at 603.451 kb on + strand, within EX31_RS24150 at 603.472 kb on + strand, within EX31_RS24150 at 603.556 kb on - strand, within EX31_RS24150 at 603.586 kb on + strand, within EX31_RS24150 at 603.676 kb on + strand, within EX31_RS24150 at 603.695 kb on - strand, within EX31_RS24150 at 603.803 kb on + strand at 603.803 kb on + strand at 603.803 kb on + strand at 603.804 kb on - strand at 603.804 kb on - strand at 603.804 kb on - strand at 603.804 kb on - strand at 603.825 kb on + strand at 603.826 kb on - strand at 603.871 kb on + strand at 603.872 kb on - strand at 603.911 kb on + strand at 603.922 kb on + strand at 603.922 kb on + strand at 603.922 kb on + strand at 603.930 kb on + strand at 603.930 kb on + strand at 603.930 kb on + strand at 603.930 kb on + strand at 603.930 kb on + strand at 603.930 kb on + strand at 603.936 kb on + strand at 603.936 kb on + strand at 603.936 kb on + strand at 603.936 kb on + strand at 603.936 kb on + strand at 603.936 kb on + strand at 603.936 kb on + strand at 603.939 kb on + strand at 603.960 kb on + strand at 603.969 kb on + strand at 604.636 kb on + strand at 604.640 kb on + strand at 604.788 kb on + strand at 604.788 kb on + strand at 604.788 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 601,098 + +1.5 601,112 + -1.4 601,124 - +1.2 601,126 + -0.2 601,138 + +0.6 601,163 + +0.2 601,164 - +0.5 601,206 + -0.6 601,206 + +0.1 601,207 - +0.8 601,220 + -1.1 601,225 + -1.2 601,225 + -0.5 601,229 + +1.5 601,283 + -0.8 601,283 + +0.4 601,283 + -0.5 601,290 + +0.5 601,301 + +0.4 601,301 + -0.0 601,301 + +0.3 601,302 - +1.4 601,323 + +0.1 601,323 + +0.8 601,323 + -0.1 601,323 + +0.2 601,323 + -0.5 601,323 + -0.0 601,324 - +0.9 601,324 - +0.4 601,325 + +1.3 601,325 + +1.2 601,325 + -0.1 601,326 - +1.4 601,362 + +0.3 601,362 + +0.3 601,362 + -1.7 601,362 + -2.3 601,362 + -1.2 601,362 + +1.1 601,362 + -0.1 601,362 + -1.1 601,362 + +0.4 601,368 + -0.5 601,368 + -0.2 601,372 + -0.6 601,678 + EX31_RS24145 0.38 -0.2 601,678 + EX31_RS24145 0.38 +0.7 601,678 + EX31_RS24145 0.38 +0.9 601,798 + EX31_RS24145 0.56 +0.6 601,798 + EX31_RS24145 0.56 +2.5 601,799 - EX31_RS24145 0.56 +0.7 601,800 + EX31_RS24145 0.56 +0.3 601,800 + EX31_RS24145 0.56 +0.4 601,889 + EX31_RS24145 0.70 +0.6 601,911 + EX31_RS24145 0.73 +1.0 601,911 + EX31_RS24145 0.73 +0.8 601,968 + EX31_RS24145 0.82 +0.7 601,968 + EX31_RS24145 0.82 -0.3 602,024 + +0.5 602,150 + +0.7 602,150 + -2.0 602,150 + +0.2 602,151 - +0.3 602,151 - -0.0 602,151 - +0.3 602,169 + -0.5 602,169 + +0.4 602,169 + +0.2 602,169 + -2.4 602,170 - +0.4 602,174 + +0.6 602,174 + +0.3 602,174 + +0.7 602,175 - +1.0 602,175 - +0.4 602,178 + +0.5 602,178 + -1.6 602,178 + -0.5 602,178 + -0.2 602,178 + +1.1 602,179 - +0.4 602,179 - -2.9 602,179 - -2.4 602,179 - +1.0 602,179 - -0.2 602,179 - -0.6 602,182 + -0.7 602,183 - -0.3 602,326 + EX31_RS24150 0.14 -0.0 602,326 + EX31_RS24150 0.14 -0.6 602,326 + EX31_RS24150 0.14 +1.0 602,330 + EX31_RS24150 0.15 -0.3 602,330 + EX31_RS24150 0.15 +0.7 602,330 + EX31_RS24150 0.15 +0.8 602,330 + EX31_RS24150 0.15 -0.6 602,330 + EX31_RS24150 0.15 -0.3 602,330 + EX31_RS24150 0.15 +0.0 602,330 + EX31_RS24150 0.15 -0.8 602,330 + EX31_RS24150 0.15 +0.5 602,331 - EX31_RS24150 0.15 +0.3 602,331 - EX31_RS24150 0.15 +0.4 602,331 - EX31_RS24150 0.15 -0.3 602,331 - EX31_RS24150 0.15 -0.4 602,331 - EX31_RS24150 0.15 +0.3 602,331 - EX31_RS24150 0.15 +0.2 602,331 - EX31_RS24150 0.15 -0.4 602,354 + EX31_RS24150 0.16 +0.2 602,356 + EX31_RS24150 0.16 -3.8 602,356 + EX31_RS24150 0.16 -0.2 602,356 + EX31_RS24150 0.16 -0.3 602,356 + EX31_RS24150 0.16 -1.3 602,356 + EX31_RS24150 0.16 +0.9 602,357 - EX31_RS24150 0.16 +0.8 602,361 + EX31_RS24150 0.16 -0.8 602,361 + EX31_RS24150 0.16 -0.8 602,361 + EX31_RS24150 0.16 -2.9 602,361 + EX31_RS24150 0.16 -1.6 602,361 + EX31_RS24150 0.16 +0.7 602,361 + EX31_RS24150 0.16 +1.0 602,362 - EX31_RS24150 0.16 +2.3 602,362 - EX31_RS24150 0.16 -1.1 602,362 - EX31_RS24150 0.16 -0.5 602,377 + EX31_RS24150 0.17 -0.2 602,378 - EX31_RS24150 0.17 +0.4 602,443 + EX31_RS24150 0.21 +0.1 602,443 + EX31_RS24150 0.21 +0.7 602,443 + EX31_RS24150 0.21 -0.2 602,444 - EX31_RS24150 0.21 -0.8 602,444 - EX31_RS24150 0.21 -0.5 602,479 + EX31_RS24150 0.23 -2.0 602,479 + EX31_RS24150 0.23 +0.4 602,486 + EX31_RS24150 0.23 -2.2 602,487 - EX31_RS24150 0.23 +1.4 602,487 - EX31_RS24150 0.23 -0.0 602,553 + EX31_RS24150 0.27 -0.0 602,553 + EX31_RS24150 0.27 -1.0 602,553 + EX31_RS24150 0.27 -0.0 602,553 + EX31_RS24150 0.27 +0.5 602,553 + EX31_RS24150 0.27 -0.3 602,553 + EX31_RS24150 0.27 -0.0 602,554 - EX31_RS24150 0.27 +1.2 602,555 + EX31_RS24150 0.27 +0.7 602,555 + EX31_RS24150 0.27 +0.3 602,556 - EX31_RS24150 0.27 +0.0 602,586 - EX31_RS24150 0.28 +0.5 602,642 + EX31_RS24150 0.32 -0.4 602,643 - EX31_RS24150 0.32 +0.6 602,644 + EX31_RS24150 0.32 -0.8 602,644 + EX31_RS24150 0.32 +0.3 602,644 + EX31_RS24150 0.32 -0.6 602,644 + EX31_RS24150 0.32 -0.2 602,644 + EX31_RS24150 0.32 +0.7 602,660 + EX31_RS24150 0.32 -0.2 602,660 + EX31_RS24150 0.32 +0.1 602,660 + EX31_RS24150 0.32 +0.6 602,661 - EX31_RS24150 0.33 +0.9 602,734 + EX31_RS24150 0.36 +0.1 602,735 - EX31_RS24150 0.37 -0.5 602,787 + EX31_RS24150 0.39 -0.4 602,787 + EX31_RS24150 0.39 +0.6 602,991 - EX31_RS24150 0.50 -1.0 603,257 - EX31_RS24150 0.65 -0.1 603,286 + EX31_RS24150 0.66 +0.2 603,286 + EX31_RS24150 0.66 +2.4 603,286 + EX31_RS24150 0.66 +0.3 603,287 - EX31_RS24150 0.66 +0.6 603,287 - EX31_RS24150 0.66 +0.0 603,289 + EX31_RS24150 0.66 -0.1 603,289 + EX31_RS24150 0.66 +0.5 603,290 - EX31_RS24150 0.66 +0.1 603,353 + EX31_RS24150 0.70 -1.4 603,363 - EX31_RS24150 0.70 +0.7 603,432 + EX31_RS24150 0.74 +0.7 603,433 + EX31_RS24150 0.74 -1.1 603,433 + EX31_RS24150 0.74 +0.7 603,434 - EX31_RS24150 0.74 +0.5 603,434 - EX31_RS24150 0.74 +1.0 603,451 + EX31_RS24150 0.75 -1.0 603,472 + EX31_RS24150 0.76 -0.1 603,556 - EX31_RS24150 0.81 +2.1 603,586 + EX31_RS24150 0.82 +0.3 603,676 + EX31_RS24150 0.87 +0.4 603,695 - EX31_RS24150 0.88 +0.5 603,803 + -0.8 603,803 + -0.3 603,803 + +0.4 603,804 - +2.0 603,804 - -0.2 603,804 - +0.6 603,804 - +0.7 603,825 + +1.2 603,826 - -1.3 603,871 + -0.9 603,872 - -0.0 603,911 + -0.3 603,922 + -0.4 603,922 + +0.6 603,922 + +0.1 603,930 + +0.7 603,930 + -0.9 603,930 + -0.9 603,930 + +0.1 603,930 + +0.9 603,930 + +2.7 603,936 + +0.5 603,936 + +0.0 603,936 + -0.2 603,936 + -0.8 603,936 + +0.5 603,936 + -0.6 603,936 + +0.3 603,939 + -0.3 603,960 + -0.6 603,969 + -0.0 604,636 + -0.7 604,640 + -1.1 604,788 + -1.6 604,788 + +1.1 604,788 + -1.8
Or see this region's nucleotide sequence