Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24140 and EX31_RS24145 are separated by 739 nucleotides EX31_RS24145 and EX31_RS24150 overlap by 29 nucleotides
EX31_RS24140: EX31_RS24140 - DUF2594 family protein, at 600,465 to 600,689
_RS24140
EX31_RS24145: EX31_RS24145 - UvrY/SirA/GacA family response regulator transcription factor, at 601,429 to 602,085
_RS24145
EX31_RS24150: EX31_RS24150 - excinuclease ABC subunit UvrC, at 602,057 to 603,913
_RS24150
Position (kb) 601
602
603 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 600.460 kb on + strand at 600.461 kb on - strand at 600.573 kb on - strand, within EX31_RS24140 at 600.683 kb on + strand at 600.683 kb on + strand at 600.684 kb on - strand at 600.690 kb on + strand at 600.690 kb on + strand at 600.691 kb on - strand at 600.691 kb on - strand at 600.691 kb on - strand at 600.761 kb on + strand at 600.762 kb on - strand at 600.762 kb on - strand at 600.766 kb on + strand at 600.766 kb on + strand at 600.766 kb on + strand at 600.766 kb on + strand at 600.766 kb on + strand at 600.766 kb on + strand at 600.766 kb on + strand at 600.766 kb on + strand at 600.767 kb on - strand at 600.767 kb on - strand at 600.767 kb on - strand at 600.767 kb on - strand at 600.767 kb on - strand at 600.767 kb on - strand at 600.781 kb on - strand at 600.805 kb on - strand at 600.829 kb on + strand at 600.829 kb on + strand at 600.829 kb on + strand at 600.830 kb on - strand at 600.830 kb on - strand at 600.830 kb on - strand at 600.831 kb on + strand at 600.867 kb on + strand at 600.895 kb on + strand at 600.896 kb on - strand at 600.896 kb on - strand at 600.896 kb on - strand at 600.896 kb on - strand at 600.907 kb on + strand at 600.907 kb on + strand at 600.907 kb on + strand at 600.907 kb on + strand at 600.907 kb on + strand at 600.907 kb on + strand at 600.907 kb on + strand at 600.907 kb on + strand at 600.908 kb on - strand at 600.908 kb on - strand at 600.913 kb on + strand at 600.913 kb on + strand at 600.914 kb on - strand at 600.915 kb on + strand at 600.915 kb on + strand at 600.915 kb on + strand at 600.916 kb on - strand at 600.916 kb on - strand at 600.916 kb on - strand at 600.916 kb on - strand at 600.916 kb on - strand at 600.946 kb on - strand at 600.956 kb on + strand at 600.957 kb on - strand at 600.957 kb on - strand at 600.958 kb on + strand at 600.958 kb on + strand at 600.959 kb on - strand at 600.959 kb on - strand at 600.959 kb on - strand at 600.963 kb on + strand at 600.963 kb on + strand at 600.963 kb on + strand at 600.963 kb on + strand at 600.963 kb on + strand at 600.963 kb on + strand at 600.963 kb on + strand at 600.964 kb on - strand at 600.964 kb on - strand at 600.964 kb on - strand at 600.964 kb on - strand at 600.964 kb on - strand at 600.967 kb on + strand at 600.967 kb on + strand at 600.967 kb on + strand at 600.967 kb on + strand at 600.967 kb on + strand at 600.967 kb on + strand at 600.968 kb on - strand at 600.968 kb on - strand at 600.968 kb on - strand at 600.968 kb on - strand at 600.968 kb on - strand at 600.968 kb on - strand at 600.969 kb on + strand at 600.969 kb on + strand at 600.969 kb on + strand at 600.969 kb on + strand at 600.969 kb on + strand at 600.970 kb on - strand at 600.970 kb on - strand at 600.970 kb on - strand at 600.992 kb on + strand at 600.993 kb on - strand at 601.047 kb on - strand at 601.051 kb on - strand at 601.098 kb on + strand at 601.112 kb on + strand at 601.124 kb on - strand at 601.126 kb on + strand at 601.138 kb on + strand at 601.163 kb on + strand at 601.164 kb on - strand at 601.206 kb on + strand at 601.206 kb on + strand at 601.207 kb on - strand at 601.220 kb on + strand at 601.225 kb on + strand at 601.225 kb on + strand at 601.229 kb on + strand at 601.283 kb on + strand at 601.283 kb on + strand at 601.283 kb on + strand at 601.290 kb on + strand at 601.301 kb on + strand at 601.301 kb on + strand at 601.301 kb on + strand at 601.302 kb on - strand at 601.323 kb on + strand at 601.323 kb on + strand at 601.323 kb on + strand at 601.323 kb on + strand at 601.323 kb on + strand at 601.323 kb on + strand at 601.324 kb on - strand at 601.324 kb on - strand at 601.325 kb on + strand at 601.325 kb on + strand at 601.325 kb on + strand at 601.326 kb on - strand at 601.362 kb on + strand at 601.362 kb on + strand at 601.362 kb on + strand at 601.362 kb on + strand at 601.362 kb on + strand at 601.362 kb on + strand at 601.362 kb on + strand at 601.362 kb on + strand at 601.362 kb on + strand at 601.368 kb on + strand at 601.368 kb on + strand at 601.372 kb on + strand at 601.678 kb on + strand, within EX31_RS24145 at 601.678 kb on + strand, within EX31_RS24145 at 601.678 kb on + strand, within EX31_RS24145 at 601.798 kb on + strand, within EX31_RS24145 at 601.798 kb on + strand, within EX31_RS24145 at 601.799 kb on - strand, within EX31_RS24145 at 601.800 kb on + strand, within EX31_RS24145 at 601.800 kb on + strand, within EX31_RS24145 at 601.889 kb on + strand, within EX31_RS24145 at 601.911 kb on + strand, within EX31_RS24145 at 601.911 kb on + strand, within EX31_RS24145 at 601.968 kb on + strand, within EX31_RS24145 at 601.968 kb on + strand, within EX31_RS24145 at 602.024 kb on + strand at 602.150 kb on + strand at 602.150 kb on + strand at 602.150 kb on + strand at 602.151 kb on - strand at 602.151 kb on - strand at 602.151 kb on - strand at 602.169 kb on + strand at 602.169 kb on + strand at 602.169 kb on + strand at 602.169 kb on + strand at 602.170 kb on - strand at 602.174 kb on + strand at 602.174 kb on + strand at 602.174 kb on + strand at 602.175 kb on - strand at 602.175 kb on - strand at 602.178 kb on + strand at 602.178 kb on + strand at 602.178 kb on + strand at 602.178 kb on + strand at 602.178 kb on + strand at 602.179 kb on - strand at 602.179 kb on - strand at 602.179 kb on - strand at 602.179 kb on - strand at 602.179 kb on - strand at 602.179 kb on - strand at 602.182 kb on + strand at 602.183 kb on - strand at 602.326 kb on + strand, within EX31_RS24150 at 602.326 kb on + strand, within EX31_RS24150 at 602.326 kb on + strand, within EX31_RS24150 at 602.330 kb on + strand, within EX31_RS24150 at 602.330 kb on + strand, within EX31_RS24150 at 602.330 kb on + strand, within EX31_RS24150 at 602.330 kb on + strand, within EX31_RS24150 at 602.330 kb on + strand, within EX31_RS24150 at 602.330 kb on + strand, within EX31_RS24150 at 602.330 kb on + strand, within EX31_RS24150 at 602.330 kb on + strand, within EX31_RS24150 at 602.331 kb on - strand, within EX31_RS24150 at 602.331 kb on - strand, within EX31_RS24150 at 602.331 kb on - strand, within EX31_RS24150 at 602.331 kb on - strand, within EX31_RS24150 at 602.331 kb on - strand, within EX31_RS24150 at 602.331 kb on - strand, within EX31_RS24150 at 602.331 kb on - strand, within EX31_RS24150 at 602.354 kb on + strand, within EX31_RS24150 at 602.356 kb on + strand, within EX31_RS24150 at 602.356 kb on + strand, within EX31_RS24150 at 602.356 kb on + strand, within EX31_RS24150 at 602.356 kb on + strand, within EX31_RS24150 at 602.356 kb on + strand, within EX31_RS24150 at 602.357 kb on - strand, within EX31_RS24150 at 602.361 kb on + strand, within EX31_RS24150 at 602.361 kb on + strand, within EX31_RS24150 at 602.361 kb on + strand, within EX31_RS24150 at 602.361 kb on + strand, within EX31_RS24150 at 602.361 kb on + strand, within EX31_RS24150 at 602.361 kb on + strand, within EX31_RS24150 at 602.362 kb on - strand, within EX31_RS24150 at 602.362 kb on - strand, within EX31_RS24150 at 602.362 kb on - strand, within EX31_RS24150 at 602.377 kb on + strand, within EX31_RS24150 at 602.378 kb on - strand, within EX31_RS24150 at 602.443 kb on + strand, within EX31_RS24150 at 602.443 kb on + strand, within EX31_RS24150 at 602.443 kb on + strand, within EX31_RS24150 at 602.444 kb on - strand, within EX31_RS24150 at 602.444 kb on - strand, within EX31_RS24150 at 602.479 kb on + strand, within EX31_RS24150 at 602.479 kb on + strand, within EX31_RS24150 at 602.486 kb on + strand, within EX31_RS24150 at 602.487 kb on - strand, within EX31_RS24150 at 602.487 kb on - strand, within EX31_RS24150 at 602.553 kb on + strand, within EX31_RS24150 at 602.553 kb on + strand, within EX31_RS24150 at 602.553 kb on + strand, within EX31_RS24150 at 602.553 kb on + strand, within EX31_RS24150 at 602.553 kb on + strand, within EX31_RS24150 at 602.553 kb on + strand, within EX31_RS24150 at 602.554 kb on - strand, within EX31_RS24150 at 602.555 kb on + strand, within EX31_RS24150 at 602.555 kb on + strand, within EX31_RS24150 at 602.556 kb on - strand, within EX31_RS24150 at 602.586 kb on - strand, within EX31_RS24150 at 602.642 kb on + strand, within EX31_RS24150 at 602.643 kb on - strand, within EX31_RS24150 at 602.644 kb on + strand, within EX31_RS24150 at 602.644 kb on + strand, within EX31_RS24150 at 602.644 kb on + strand, within EX31_RS24150 at 602.644 kb on + strand, within EX31_RS24150 at 602.644 kb on + strand, within EX31_RS24150 at 602.660 kb on + strand, within EX31_RS24150 at 602.660 kb on + strand, within EX31_RS24150 at 602.660 kb on + strand, within EX31_RS24150 at 602.661 kb on - strand, within EX31_RS24150 at 602.734 kb on + strand, within EX31_RS24150 at 602.735 kb on - strand, within EX31_RS24150 at 602.787 kb on + strand, within EX31_RS24150 at 602.787 kb on + strand, within EX31_RS24150 at 602.991 kb on - strand, within EX31_RS24150
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 600,460 + +0.1 600,461 - +0.6 600,573 - EX31_RS24140 0.48 +0.1 600,683 + +0.1 600,683 + -2.2 600,684 - +2.0 600,690 + -0.8 600,690 + -0.6 600,691 - -0.5 600,691 - +0.7 600,691 - -1.1 600,761 + +0.5 600,762 - -2.4 600,762 - -0.6 600,766 + -0.3 600,766 + +1.0 600,766 + -0.6 600,766 + -0.2 600,766 + -2.0 600,766 + +0.3 600,766 + +0.2 600,766 + -0.3 600,767 - -0.8 600,767 - -0.2 600,767 - +1.1 600,767 - +0.6 600,767 - -2.0 600,767 - -1.0 600,781 - +0.0 600,805 - +0.6 600,829 + +0.6 600,829 + +0.3 600,829 + +0.0 600,830 - +0.5 600,830 - -0.4 600,830 - +2.1 600,831 + +0.2 600,867 + +0.6 600,895 + -0.3 600,896 - +0.5 600,896 - -2.2 600,896 - -0.8 600,896 - -0.6 600,907 + +1.0 600,907 + +0.3 600,907 + +0.5 600,907 + +0.5 600,907 + -0.0 600,907 + -0.6 600,907 + +0.1 600,907 + -1.4 600,908 - +0.6 600,908 - -0.5 600,913 + -0.5 600,913 + +0.8 600,914 - -0.7 600,915 + -0.6 600,915 + +0.3 600,915 + +0.9 600,916 - +0.9 600,916 - -0.6 600,916 - -0.4 600,916 - +0.7 600,916 - +1.1 600,946 - +0.2 600,956 + +0.8 600,957 - -1.8 600,957 - -0.2 600,958 + +0.6 600,958 + +0.9 600,959 - +1.0 600,959 - -1.0 600,959 - +0.1 600,963 + +1.3 600,963 + -1.1 600,963 + +0.2 600,963 + +1.9 600,963 + -3.0 600,963 + +0.6 600,963 + -0.4 600,964 - +0.1 600,964 - -2.3 600,964 - -1.4 600,964 - -1.8 600,964 - +0.2 600,967 + -0.2 600,967 + +0.6 600,967 + -0.0 600,967 + -0.2 600,967 + -0.1 600,967 + +0.5 600,968 - +0.8 600,968 - -0.9 600,968 - +0.0 600,968 - +0.5 600,968 - +0.0 600,968 - +1.0 600,969 + -0.8 600,969 + -0.5 600,969 + -0.1 600,969 + -1.2 600,969 + -0.8 600,970 - +0.1 600,970 - +0.9 600,970 - +1.1 600,992 + +0.6 600,993 - -1.8 601,047 - -0.6 601,051 - +0.1 601,098 + +1.5 601,112 + -1.4 601,124 - +1.2 601,126 + -0.2 601,138 + +0.6 601,163 + +0.2 601,164 - +0.5 601,206 + -0.6 601,206 + +0.1 601,207 - +0.8 601,220 + -1.1 601,225 + -1.2 601,225 + -0.5 601,229 + +1.5 601,283 + -0.8 601,283 + +0.4 601,283 + -0.5 601,290 + +0.5 601,301 + +0.4 601,301 + -0.0 601,301 + +0.3 601,302 - +1.4 601,323 + +0.1 601,323 + +0.8 601,323 + -0.1 601,323 + +0.2 601,323 + -0.5 601,323 + -0.0 601,324 - +0.9 601,324 - +0.4 601,325 + +1.3 601,325 + +1.2 601,325 + -0.1 601,326 - +1.4 601,362 + +0.3 601,362 + +0.3 601,362 + -1.7 601,362 + -2.3 601,362 + -1.2 601,362 + +1.1 601,362 + -0.1 601,362 + -1.1 601,362 + +0.4 601,368 + -0.5 601,368 + -0.2 601,372 + -0.6 601,678 + EX31_RS24145 0.38 -0.2 601,678 + EX31_RS24145 0.38 +0.7 601,678 + EX31_RS24145 0.38 +0.9 601,798 + EX31_RS24145 0.56 +0.6 601,798 + EX31_RS24145 0.56 +2.5 601,799 - EX31_RS24145 0.56 +0.7 601,800 + EX31_RS24145 0.56 +0.3 601,800 + EX31_RS24145 0.56 +0.4 601,889 + EX31_RS24145 0.70 +0.6 601,911 + EX31_RS24145 0.73 +1.0 601,911 + EX31_RS24145 0.73 +0.8 601,968 + EX31_RS24145 0.82 +0.7 601,968 + EX31_RS24145 0.82 -0.3 602,024 + +0.5 602,150 + +0.7 602,150 + -2.0 602,150 + +0.2 602,151 - +0.3 602,151 - -0.0 602,151 - +0.3 602,169 + -0.5 602,169 + +0.4 602,169 + +0.2 602,169 + -2.4 602,170 - +0.4 602,174 + +0.6 602,174 + +0.3 602,174 + +0.7 602,175 - +1.0 602,175 - +0.4 602,178 + +0.5 602,178 + -1.6 602,178 + -0.5 602,178 + -0.2 602,178 + +1.1 602,179 - +0.4 602,179 - -2.9 602,179 - -2.4 602,179 - +1.0 602,179 - -0.2 602,179 - -0.6 602,182 + -0.7 602,183 - -0.3 602,326 + EX31_RS24150 0.14 -0.0 602,326 + EX31_RS24150 0.14 -0.6 602,326 + EX31_RS24150 0.14 +1.0 602,330 + EX31_RS24150 0.15 -0.3 602,330 + EX31_RS24150 0.15 +0.7 602,330 + EX31_RS24150 0.15 +0.8 602,330 + EX31_RS24150 0.15 -0.6 602,330 + EX31_RS24150 0.15 -0.3 602,330 + EX31_RS24150 0.15 +0.0 602,330 + EX31_RS24150 0.15 -0.8 602,330 + EX31_RS24150 0.15 +0.5 602,331 - EX31_RS24150 0.15 +0.3 602,331 - EX31_RS24150 0.15 +0.4 602,331 - EX31_RS24150 0.15 -0.3 602,331 - EX31_RS24150 0.15 -0.4 602,331 - EX31_RS24150 0.15 +0.3 602,331 - EX31_RS24150 0.15 +0.2 602,331 - EX31_RS24150 0.15 -0.4 602,354 + EX31_RS24150 0.16 +0.2 602,356 + EX31_RS24150 0.16 -3.8 602,356 + EX31_RS24150 0.16 -0.2 602,356 + EX31_RS24150 0.16 -0.3 602,356 + EX31_RS24150 0.16 -1.3 602,356 + EX31_RS24150 0.16 +0.9 602,357 - EX31_RS24150 0.16 +0.8 602,361 + EX31_RS24150 0.16 -0.8 602,361 + EX31_RS24150 0.16 -0.8 602,361 + EX31_RS24150 0.16 -2.9 602,361 + EX31_RS24150 0.16 -1.6 602,361 + EX31_RS24150 0.16 +0.7 602,361 + EX31_RS24150 0.16 +1.0 602,362 - EX31_RS24150 0.16 +2.3 602,362 - EX31_RS24150 0.16 -1.1 602,362 - EX31_RS24150 0.16 -0.5 602,377 + EX31_RS24150 0.17 -0.2 602,378 - EX31_RS24150 0.17 +0.4 602,443 + EX31_RS24150 0.21 +0.1 602,443 + EX31_RS24150 0.21 +0.7 602,443 + EX31_RS24150 0.21 -0.2 602,444 - EX31_RS24150 0.21 -0.8 602,444 - EX31_RS24150 0.21 -0.5 602,479 + EX31_RS24150 0.23 -2.0 602,479 + EX31_RS24150 0.23 +0.4 602,486 + EX31_RS24150 0.23 -2.2 602,487 - EX31_RS24150 0.23 +1.4 602,487 - EX31_RS24150 0.23 -0.0 602,553 + EX31_RS24150 0.27 -0.0 602,553 + EX31_RS24150 0.27 -1.0 602,553 + EX31_RS24150 0.27 -0.0 602,553 + EX31_RS24150 0.27 +0.5 602,553 + EX31_RS24150 0.27 -0.3 602,553 + EX31_RS24150 0.27 -0.0 602,554 - EX31_RS24150 0.27 +1.2 602,555 + EX31_RS24150 0.27 +0.7 602,555 + EX31_RS24150 0.27 +0.3 602,556 - EX31_RS24150 0.27 +0.0 602,586 - EX31_RS24150 0.28 +0.5 602,642 + EX31_RS24150 0.32 -0.4 602,643 - EX31_RS24150 0.32 +0.6 602,644 + EX31_RS24150 0.32 -0.8 602,644 + EX31_RS24150 0.32 +0.3 602,644 + EX31_RS24150 0.32 -0.6 602,644 + EX31_RS24150 0.32 -0.2 602,644 + EX31_RS24150 0.32 +0.7 602,660 + EX31_RS24150 0.32 -0.2 602,660 + EX31_RS24150 0.32 +0.1 602,660 + EX31_RS24150 0.32 +0.6 602,661 - EX31_RS24150 0.33 +0.9 602,734 + EX31_RS24150 0.36 +0.1 602,735 - EX31_RS24150 0.37 -0.5 602,787 + EX31_RS24150 0.39 -0.4 602,787 + EX31_RS24150 0.39 +0.6 602,991 - EX31_RS24150 0.50 -1.0
Or see this region's nucleotide sequence