Strain Fitness in Rahnella sp. WP5 around EX31_RS23840

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23835 and EX31_RS23840 are separated by 160 nucleotidesEX31_RS23840 and EX31_RS23845 overlap by 1 nucleotides EX31_RS23835: EX31_RS23835 - phosphonate ABC transporter substrate-binding protein, at 534,963 to 535,895 _RS23835 EX31_RS23840: EX31_RS23840 - phosphonate ABC transporter, permease protein PhnE, at 536,056 to 536,919 _RS23840 EX31_RS23845: EX31_RS23845 - phosphonate ABC transporter, permease protein PhnE, at 536,919 to 537,842 _RS23845 Position (kb) 536 537Strain fitness (log2 ratio) -3 -2 -1 0 1at 535.154 kb on + strand, within EX31_RS23835at 535.189 kb on + strand, within EX31_RS23835at 535.192 kb on + strand, within EX31_RS23835at 535.192 kb on + strand, within EX31_RS23835at 535.192 kb on + strand, within EX31_RS23835at 535.193 kb on - strand, within EX31_RS23835at 535.193 kb on - strand, within EX31_RS23835at 535.214 kb on - strand, within EX31_RS23835at 535.214 kb on - strand, within EX31_RS23835at 535.214 kb on - strand, within EX31_RS23835at 535.216 kb on + strand, within EX31_RS23835at 535.217 kb on - strand, within EX31_RS23835at 535.217 kb on - strand, within EX31_RS23835at 535.248 kb on + strand, within EX31_RS23835at 535.251 kb on - strand, within EX31_RS23835at 535.254 kb on - strand, within EX31_RS23835at 535.304 kb on + strand, within EX31_RS23835at 535.363 kb on + strand, within EX31_RS23835at 535.477 kb on - strand, within EX31_RS23835at 535.604 kb on + strand, within EX31_RS23835at 535.604 kb on + strand, within EX31_RS23835at 535.604 kb on + strand, within EX31_RS23835at 535.605 kb on - strand, within EX31_RS23835at 535.605 kb on - strand, within EX31_RS23835at 535.670 kb on + strand, within EX31_RS23835at 535.708 kb on + strand, within EX31_RS23835at 535.736 kb on + strand, within EX31_RS23835at 535.736 kb on + strand, within EX31_RS23835at 535.737 kb on - strand, within EX31_RS23835at 535.737 kb on - strand, within EX31_RS23835at 535.737 kb on - strand, within EX31_RS23835at 535.742 kb on + strand, within EX31_RS23835at 535.742 kb on + strand, within EX31_RS23835at 535.796 kb on - strand, within EX31_RS23835at 535.845 kb on + strandat 535.856 kb on + strandat 535.862 kb on + strandat 535.941 kb on + strandat 536.027 kb on - strandat 536.145 kb on - strand, within EX31_RS23840at 536.146 kb on + strand, within EX31_RS23840at 536.218 kb on + strand, within EX31_RS23840at 536.218 kb on + strand, within EX31_RS23840at 536.219 kb on - strand, within EX31_RS23840at 536.220 kb on + strand, within EX31_RS23840at 536.221 kb on - strand, within EX31_RS23840at 536.243 kb on + strand, within EX31_RS23840at 536.258 kb on + strand, within EX31_RS23840at 536.258 kb on + strand, within EX31_RS23840at 536.274 kb on + strand, within EX31_RS23840at 536.275 kb on - strand, within EX31_RS23840at 536.340 kb on + strand, within EX31_RS23840at 536.340 kb on + strand, within EX31_RS23840at 536.340 kb on + strand, within EX31_RS23840at 536.340 kb on + strand, within EX31_RS23840at 536.367 kb on - strand, within EX31_RS23840at 536.449 kb on + strand, within EX31_RS23840at 536.587 kb on + strand, within EX31_RS23840at 536.588 kb on - strand, within EX31_RS23840at 536.588 kb on - strand, within EX31_RS23840at 536.703 kb on - strand, within EX31_RS23840at 536.707 kb on + strand, within EX31_RS23840at 536.707 kb on + strand, within EX31_RS23840at 536.749 kb on - strand, within EX31_RS23840at 536.837 kb on + strandat 536.837 kb on + strandat 536.837 kb on + strandat 536.837 kb on + strandat 536.847 kb on + strandat 536.847 kb on + strandat 536.923 kb on + strandat 536.923 kb on + strandat 537.036 kb on - strand, within EX31_RS23845at 537.042 kb on + strand, within EX31_RS23845at 537.042 kb on + strand, within EX31_RS23845at 537.045 kb on + strand, within EX31_RS23845at 537.045 kb on + strand, within EX31_RS23845at 537.046 kb on - strand, within EX31_RS23845at 537.046 kb on - strand, within EX31_RS23845at 537.051 kb on + strand, within EX31_RS23845at 537.051 kb on + strand, within EX31_RS23845at 537.052 kb on - strand, within EX31_RS23845at 537.063 kb on + strand, within EX31_RS23845at 537.064 kb on - strand, within EX31_RS23845at 537.064 kb on - strand, within EX31_RS23845at 537.109 kb on + strand, within EX31_RS23845at 537.109 kb on + strand, within EX31_RS23845at 537.110 kb on - strand, within EX31_RS23845at 537.117 kb on + strand, within EX31_RS23845at 537.143 kb on + strand, within EX31_RS23845at 537.164 kb on + strand, within EX31_RS23845at 537.164 kb on + strand, within EX31_RS23845at 537.184 kb on + strand, within EX31_RS23845at 537.184 kb on + strand, within EX31_RS23845at 537.184 kb on + strand, within EX31_RS23845at 537.184 kb on + strand, within EX31_RS23845at 537.184 kb on + strand, within EX31_RS23845at 537.184 kb on + strand, within EX31_RS23845at 537.184 kb on + strand, within EX31_RS23845at 537.184 kb on + strand, within EX31_RS23845at 537.184 kb on + strand, within EX31_RS23845at 537.184 kb on + strand, within EX31_RS23845at 537.185 kb on - strand, within EX31_RS23845at 537.185 kb on - strand, within EX31_RS23845at 537.185 kb on - strand, within EX31_RS23845at 537.188 kb on + strand, within EX31_RS23845at 537.189 kb on - strand, within EX31_RS23845at 537.266 kb on + strand, within EX31_RS23845at 537.331 kb on + strand, within EX31_RS23845at 537.651 kb on + strand, within EX31_RS23845at 537.651 kb on + strand, within EX31_RS23845at 537.652 kb on - strand, within EX31_RS23845at 537.662 kb on + strand, within EX31_RS23845at 537.721 kb on + strand, within EX31_RS23845at 537.762 kb on + strandat 537.762 kb on + strandat 537.762 kb on + strandat 537.763 kb on - strandat 537.763 kb on - strandat 537.782 kb on + strandat 537.783 kb on - strandat 537.840 kb on + strandat 537.840 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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535,154 + EX31_RS23835 0.20 +0.6
535,189 + EX31_RS23835 0.24 -0.2
535,192 + EX31_RS23835 0.25 +0.4
535,192 + EX31_RS23835 0.25 -0.5
535,192 + EX31_RS23835 0.25 -0.3
535,193 - EX31_RS23835 0.25 -0.9
535,193 - EX31_RS23835 0.25 -0.9
535,214 - EX31_RS23835 0.27 -0.0
535,214 - EX31_RS23835 0.27 -0.6
535,214 - EX31_RS23835 0.27 -1.4
535,216 + EX31_RS23835 0.27 +0.5
535,217 - EX31_RS23835 0.27 +0.9
535,217 - EX31_RS23835 0.27 -1.6
535,248 + EX31_RS23835 0.31 -0.1
535,251 - EX31_RS23835 0.31 +0.1
535,254 - EX31_RS23835 0.31 -0.7
535,304 + EX31_RS23835 0.37 -0.5
535,363 + EX31_RS23835 0.43 -0.1
535,477 - EX31_RS23835 0.55 -0.4
535,604 + EX31_RS23835 0.69 -0.4
535,604 + EX31_RS23835 0.69 -0.2
535,604 + EX31_RS23835 0.69 -0.4
535,605 - EX31_RS23835 0.69 -0.2
535,605 - EX31_RS23835 0.69 +0.2
535,670 + EX31_RS23835 0.76 -0.3
535,708 + EX31_RS23835 0.80 +0.4
535,736 + EX31_RS23835 0.83 -2.8
535,736 + EX31_RS23835 0.83 +0.1
535,737 - EX31_RS23835 0.83 -2.5
535,737 - EX31_RS23835 0.83 +1.1
535,737 - EX31_RS23835 0.83 -1.2
535,742 + EX31_RS23835 0.83 +0.5
535,742 + EX31_RS23835 0.83 -0.1
535,796 - EX31_RS23835 0.89 +0.9
535,845 + -0.1
535,856 + +0.8
535,862 + +0.1
535,941 + -0.1
536,027 - -0.9
536,145 - EX31_RS23840 0.10 -1.8
536,146 + EX31_RS23840 0.10 +1.1
536,218 + EX31_RS23840 0.19 -0.6
536,218 + EX31_RS23840 0.19 -0.6
536,219 - EX31_RS23840 0.19 +0.8
536,220 + EX31_RS23840 0.19 +0.7
536,221 - EX31_RS23840 0.19 -1.4
536,243 + EX31_RS23840 0.22 -0.7
536,258 + EX31_RS23840 0.23 -0.8
536,258 + EX31_RS23840 0.23 +0.4
536,274 + EX31_RS23840 0.25 -0.9
536,275 - EX31_RS23840 0.25 -0.6
536,340 + EX31_RS23840 0.33 -0.2
536,340 + EX31_RS23840 0.33 +0.1
536,340 + EX31_RS23840 0.33 +0.5
536,340 + EX31_RS23840 0.33 -0.4
536,367 - EX31_RS23840 0.36 -0.4
536,449 + EX31_RS23840 0.45 -0.5
536,587 + EX31_RS23840 0.61 -0.2
536,588 - EX31_RS23840 0.62 +0.0
536,588 - EX31_RS23840 0.62 -0.6
536,703 - EX31_RS23840 0.75 -0.1
536,707 + EX31_RS23840 0.75 -0.5
536,707 + EX31_RS23840 0.75 -1.1
536,749 - EX31_RS23840 0.80 -0.6
536,837 + -0.7
536,837 + -0.1
536,837 + -0.4
536,837 + -0.6
536,847 + -0.6
536,847 + -0.8
536,923 + -0.1
536,923 + +0.2
537,036 - EX31_RS23845 0.13 -1.1
537,042 + EX31_RS23845 0.13 +0.1
537,042 + EX31_RS23845 0.13 +0.2
537,045 + EX31_RS23845 0.14 +0.5
537,045 + EX31_RS23845 0.14 -0.1
537,046 - EX31_RS23845 0.14 -0.2
537,046 - EX31_RS23845 0.14 +1.2
537,051 + EX31_RS23845 0.14 +0.6
537,051 + EX31_RS23845 0.14 +0.6
537,052 - EX31_RS23845 0.14 -0.8
537,063 + EX31_RS23845 0.16 -0.1
537,064 - EX31_RS23845 0.16 +0.1
537,064 - EX31_RS23845 0.16 -1.1
537,109 + EX31_RS23845 0.21 -1.0
537,109 + EX31_RS23845 0.21 +0.2
537,110 - EX31_RS23845 0.21 -2.9
537,117 + EX31_RS23845 0.21 +0.4
537,143 + EX31_RS23845 0.24 +0.2
537,164 + EX31_RS23845 0.27 -0.2
537,164 + EX31_RS23845 0.27 -0.0
537,184 + EX31_RS23845 0.29 +0.1
537,184 + EX31_RS23845 0.29 +0.8
537,184 + EX31_RS23845 0.29 -1.3
537,184 + EX31_RS23845 0.29 +0.0
537,184 + EX31_RS23845 0.29 +1.2
537,184 + EX31_RS23845 0.29 +0.1
537,184 + EX31_RS23845 0.29 -0.4
537,184 + EX31_RS23845 0.29 -0.4
537,184 + EX31_RS23845 0.29 -0.5
537,184 + EX31_RS23845 0.29 -0.1
537,185 - EX31_RS23845 0.29 -1.9
537,185 - EX31_RS23845 0.29 -0.3
537,185 - EX31_RS23845 0.29 -1.8
537,188 + EX31_RS23845 0.29 +0.3
537,189 - EX31_RS23845 0.29 -0.2
537,266 + EX31_RS23845 0.38 +0.5
537,331 + EX31_RS23845 0.45 +1.7
537,651 + EX31_RS23845 0.79 -1.1
537,651 + EX31_RS23845 0.79 -1.2
537,652 - EX31_RS23845 0.79 +0.4
537,662 + EX31_RS23845 0.80 -1.7
537,721 + EX31_RS23845 0.87 -1.0
537,762 + +1.0
537,762 + +0.4
537,762 + +0.0
537,763 - -0.5
537,763 - +0.3
537,782 + +0.7
537,783 - +0.7
537,840 + -2.2
537,840 + -2.1

Or see this region's nucleotide sequence