Strain Fitness in Rahnella sp. WP5 around EX31_RS09835

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09830 and EX31_RS09835 are separated by 60 nucleotidesEX31_RS09835 and EX31_RS09840 are separated by 42 nucleotides EX31_RS09830: EX31_RS09830 - formate C-acetyltransferase/glycerol dehydratase family glycyl radical enzyme, at 173,021 to 175,453 _RS09830 EX31_RS09835: EX31_RS09835 - DeoR/GlpR transcriptional regulator, at 175,514 to 176,257 _RS09835 EX31_RS09840: EX31_RS09840 - L-ribulose-5-phosphate 4-epimerase, at 176,300 to 176,995 _RS09840 Position (kb) 175 176 177Strain fitness (log2 ratio) -2 -1 0 1at 174.551 kb on + strand, within EX31_RS09830at 174.551 kb on + strand, within EX31_RS09830at 174.551 kb on + strand, within EX31_RS09830at 174.551 kb on + strand, within EX31_RS09830at 174.551 kb on + strand, within EX31_RS09830at 174.552 kb on - strand, within EX31_RS09830at 174.552 kb on - strand, within EX31_RS09830at 174.552 kb on - strand, within EX31_RS09830at 174.552 kb on - strand, within EX31_RS09830at 174.616 kb on + strand, within EX31_RS09830at 174.646 kb on + strand, within EX31_RS09830at 174.646 kb on + strand, within EX31_RS09830at 174.646 kb on + strand, within EX31_RS09830at 174.648 kb on + strand, within EX31_RS09830at 174.648 kb on + strand, within EX31_RS09830at 174.648 kb on + strand, within EX31_RS09830at 174.649 kb on - strand, within EX31_RS09830at 174.649 kb on - strand, within EX31_RS09830at 174.686 kb on + strand, within EX31_RS09830at 174.686 kb on + strand, within EX31_RS09830at 174.815 kb on + strand, within EX31_RS09830at 174.872 kb on + strand, within EX31_RS09830at 174.898 kb on + strand, within EX31_RS09830at 174.898 kb on + strand, within EX31_RS09830at 174.926 kb on + strand, within EX31_RS09830at 174.926 kb on + strand, within EX31_RS09830at 174.926 kb on + strand, within EX31_RS09830at 174.927 kb on - strand, within EX31_RS09830at 174.927 kb on - strand, within EX31_RS09830at 174.989 kb on + strand, within EX31_RS09830at 174.989 kb on + strand, within EX31_RS09830at 174.989 kb on + strand, within EX31_RS09830at 174.989 kb on + strand, within EX31_RS09830at 174.990 kb on - strand, within EX31_RS09830at 174.993 kb on - strand, within EX31_RS09830at 175.063 kb on + strand, within EX31_RS09830at 175.072 kb on + strand, within EX31_RS09830at 175.138 kb on + strand, within EX31_RS09830at 175.243 kb on - strandat 175.300 kb on + strandat 175.320 kb on + strandat 175.321 kb on - strandat 175.324 kb on + strandat 175.324 kb on + strandat 175.325 kb on - strandat 175.350 kb on - strandat 175.423 kb on + strandat 175.423 kb on + strandat 175.423 kb on + strandat 175.424 kb on - strandat 175.424 kb on - strandat 175.424 kb on - strandat 175.426 kb on + strandat 175.452 kb on - strandat 175.500 kb on + strandat 175.513 kb on + strandat 175.534 kb on + strandat 175.627 kb on + strand, within EX31_RS09835at 175.649 kb on + strand, within EX31_RS09835at 175.682 kb on - strand, within EX31_RS09835at 175.824 kb on - strand, within EX31_RS09835at 175.868 kb on + strand, within EX31_RS09835at 175.869 kb on - strand, within EX31_RS09835at 175.891 kb on + strand, within EX31_RS09835at 175.891 kb on + strand, within EX31_RS09835at 176.055 kb on + strand, within EX31_RS09835at 176.055 kb on + strand, within EX31_RS09835at 176.055 kb on + strand, within EX31_RS09835at 176.056 kb on - strand, within EX31_RS09835at 176.056 kb on - strand, within EX31_RS09835at 176.207 kb on + strandat 176.237 kb on - strandat 176.260 kb on + strandat 176.260 kb on + strandat 176.261 kb on - strandat 176.267 kb on - strandat 176.301 kb on + strandat 176.302 kb on - strandat 176.314 kb on - strandat 176.347 kb on + strandat 176.347 kb on + strandat 176.348 kb on - strandat 176.413 kb on - strand, within EX31_RS09840at 176.498 kb on + strand, within EX31_RS09840at 176.499 kb on - strand, within EX31_RS09840at 176.499 kb on - strand, within EX31_RS09840at 176.575 kb on - strand, within EX31_RS09840at 176.634 kb on + strand, within EX31_RS09840at 176.710 kb on + strand, within EX31_RS09840at 176.746 kb on - strand, within EX31_RS09840at 176.924 kb on - strand, within EX31_RS09840at 176.966 kb on + strandat 176.970 kb on - strandat 176.970 kb on - strandat 176.990 kb on + strandat 176.990 kb on + strandat 177.012 kb on + strandat 177.013 kb on - strandat 177.013 kb on - strandat 177.077 kb on - strandat 177.095 kb on + strandat 177.095 kb on + strandat 177.183 kb on + strandat 177.206 kb on + strandat 177.206 kb on + strandat 177.207 kb on - strandat 177.226 kb on + strandat 177.226 kb on + strandat 177.230 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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174,551 + EX31_RS09830 0.63 +0.7
174,551 + EX31_RS09830 0.63 -0.2
174,551 + EX31_RS09830 0.63 +0.4
174,551 + EX31_RS09830 0.63 -0.2
174,551 + EX31_RS09830 0.63 -0.2
174,552 - EX31_RS09830 0.63 +0.7
174,552 - EX31_RS09830 0.63 -0.1
174,552 - EX31_RS09830 0.63 +1.3
174,552 - EX31_RS09830 0.63 -0.1
174,616 + EX31_RS09830 0.66 -1.0
174,646 + EX31_RS09830 0.67 -0.7
174,646 + EX31_RS09830 0.67 +0.1
174,646 + EX31_RS09830 0.67 +1.1
174,648 + EX31_RS09830 0.67 -2.3
174,648 + EX31_RS09830 0.67 -0.2
174,648 + EX31_RS09830 0.67 -1.8
174,649 - EX31_RS09830 0.67 +1.0
174,649 - EX31_RS09830 0.67 -0.1
174,686 + EX31_RS09830 0.68 +0.2
174,686 + EX31_RS09830 0.68 +0.5
174,815 + EX31_RS09830 0.74 -0.0
174,872 + EX31_RS09830 0.76 +0.2
174,898 + EX31_RS09830 0.77 -2.3
174,898 + EX31_RS09830 0.77 -1.0
174,926 + EX31_RS09830 0.78 +0.6
174,926 + EX31_RS09830 0.78 +0.5
174,926 + EX31_RS09830 0.78 -0.8
174,927 - EX31_RS09830 0.78 +0.2
174,927 - EX31_RS09830 0.78 +0.9
174,989 + EX31_RS09830 0.81 +1.4
174,989 + EX31_RS09830 0.81 -0.3
174,989 + EX31_RS09830 0.81 +0.4
174,989 + EX31_RS09830 0.81 +0.1
174,990 - EX31_RS09830 0.81 +1.1
174,993 - EX31_RS09830 0.81 +0.8
175,063 + EX31_RS09830 0.84 +1.1
175,072 + EX31_RS09830 0.84 +1.1
175,138 + EX31_RS09830 0.87 -0.1
175,243 - -1.1
175,300 + +0.3
175,320 + -1.2
175,321 - +1.1
175,324 + -0.0
175,324 + +0.7
175,325 - -0.5
175,350 - +0.4
175,423 + +0.4
175,423 + +0.9
175,423 + -0.7
175,424 - -1.2
175,424 - +1.1
175,424 - -0.3
175,426 + +0.7
175,452 - -0.5
175,500 + +0.7
175,513 + +0.6
175,534 + +1.0
175,627 + EX31_RS09835 0.15 -0.2
175,649 + EX31_RS09835 0.18 -0.1
175,682 - EX31_RS09835 0.23 +0.2
175,824 - EX31_RS09835 0.42 -1.7
175,868 + EX31_RS09835 0.48 -0.8
175,869 - EX31_RS09835 0.48 +0.7
175,891 + EX31_RS09835 0.51 -1.1
175,891 + EX31_RS09835 0.51 -0.1
176,055 + EX31_RS09835 0.73 -2.6
176,055 + EX31_RS09835 0.73 -1.2
176,055 + EX31_RS09835 0.73 +0.4
176,056 - EX31_RS09835 0.73 -0.8
176,056 - EX31_RS09835 0.73 -0.3
176,207 + +0.4
176,237 - +0.8
176,260 + +0.6
176,260 + +1.3
176,261 - +0.6
176,267 - +0.2
176,301 + -0.3
176,302 - +0.1
176,314 - -1.9
176,347 + +0.0
176,347 + -0.4
176,348 - +0.1
176,413 - EX31_RS09840 0.16 +0.2
176,498 + EX31_RS09840 0.28 -0.2
176,499 - EX31_RS09840 0.29 +0.1
176,499 - EX31_RS09840 0.29 +0.4
176,575 - EX31_RS09840 0.40 -0.1
176,634 + EX31_RS09840 0.48 +0.8
176,710 + EX31_RS09840 0.59 +0.7
176,746 - EX31_RS09840 0.64 -1.3
176,924 - EX31_RS09840 0.90 -0.0
176,966 + -0.6
176,970 - -0.3
176,970 - +0.4
176,990 + +0.3
176,990 + +1.0
177,012 + -0.1
177,013 - +0.7
177,013 - +0.3
177,077 - -0.7
177,095 + -0.6
177,095 + +0.9
177,183 + -1.2
177,206 + -2.0
177,206 + +0.3
177,207 - +1.0
177,226 + +0.5
177,226 + +1.0
177,230 + +0.9

Or see this region's nucleotide sequence