Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07405 and EX31_RS07410 are separated by 343 nucleotides EX31_RS07410 and EX31_RS07415 are separated by 303 nucleotides
EX31_RS07405: EX31_RS07405 - beta-(1,2)-glucan biosynthesis protein, at 286,341 to 294,890
_RS07405
EX31_RS07410: EX31_RS07410 - NAD(P)H-dependent oxidoreductase, at 295,234 to 295,872
_RS07410
EX31_RS07415: EX31_RS07415 - bifunctional diguanylate cyclase/phosphodiesterase, at 296,176 to 297,726
_RS07415
Position (kb) 295
296 Strain fitness (log2 ratio) -2
-1
0
1
2 at 294.251 kb on + strand at 294.364 kb on - strand at 294.397 kb on + strand at 294.475 kb on + strand at 294.578 kb on - strand at 294.592 kb on - strand at 294.688 kb on - strand at 294.688 kb on - strand at 294.839 kb on + strand at 294.873 kb on - strand at 294.898 kb on + strand at 294.899 kb on - strand at 295.012 kb on + strand at 295.020 kb on + strand at 295.020 kb on + strand at 295.021 kb on - strand at 295.021 kb on - strand at 295.024 kb on - strand at 295.032 kb on + strand at 295.116 kb on + strand at 295.133 kb on - strand at 295.173 kb on - strand at 295.182 kb on + strand at 295.183 kb on - strand at 295.245 kb on - strand at 295.323 kb on + strand, within EX31_RS07410 at 295.323 kb on + strand, within EX31_RS07410 at 295.618 kb on + strand, within EX31_RS07410 at 295.642 kb on + strand, within EX31_RS07410 at 295.643 kb on - strand, within EX31_RS07410 at 295.643 kb on - strand, within EX31_RS07410 at 295.870 kb on + strand at 295.870 kb on + strand at 295.928 kb on - strand at 295.953 kb on - strand at 295.960 kb on + strand at 295.960 kb on + strand at 295.960 kb on + strand at 295.961 kb on - strand at 295.982 kb on + strand at 295.982 kb on + strand at 295.983 kb on - strand at 295.983 kb on - strand at 295.984 kb on + strand at 295.984 kb on + strand at 295.984 kb on + strand at 295.985 kb on - strand at 295.985 kb on - strand at 296.058 kb on + strand at 296.058 kb on + strand at 296.059 kb on - strand at 296.059 kb on - strand at 296.059 kb on - strand at 296.059 kb on - strand at 296.059 kb on - strand at 296.176 kb on - strand at 296.176 kb on - strand at 296.176 kb on - strand at 296.215 kb on + strand at 296.799 kb on + strand, within EX31_RS07415
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 294,251 + -2.0 294,364 - -0.0 294,397 + -1.5 294,475 + +0.5 294,578 - -0.3 294,592 - +2.2 294,688 - -0.7 294,688 - +0.5 294,839 + +0.9 294,873 - -0.7 294,898 + +0.1 294,899 - +0.6 295,012 + +1.0 295,020 + -0.3 295,020 + -0.3 295,021 - -0.4 295,021 - -0.7 295,024 - +0.4 295,032 + -2.2 295,116 + +0.4 295,133 - -1.2 295,173 - +0.1 295,182 + -0.7 295,183 - +0.0 295,245 - -2.4 295,323 + EX31_RS07410 0.14 +0.8 295,323 + EX31_RS07410 0.14 +0.6 295,618 + EX31_RS07410 0.60 +0.3 295,642 + EX31_RS07410 0.64 -0.2 295,643 - EX31_RS07410 0.64 -0.4 295,643 - EX31_RS07410 0.64 -1.6 295,870 + -0.5 295,870 + +1.2 295,928 - +0.0 295,953 - +0.3 295,960 + +0.2 295,960 + -2.5 295,960 + +0.1 295,961 - -0.6 295,982 + +1.6 295,982 + +0.4 295,983 - -0.2 295,983 - +1.0 295,984 + +0.3 295,984 + -1.5 295,984 + -0.3 295,985 - +1.1 295,985 - -1.4 296,058 + +0.5 296,058 + -0.2 296,059 - +0.8 296,059 - +0.4 296,059 - -1.5 296,059 - +0.5 296,059 - -1.5 296,176 - -0.0 296,176 - -0.9 296,176 - +0.5 296,215 + +1.4 296,799 + EX31_RS07415 0.40 +2.1
Or see this region's nucleotide sequence