Strain Fitness in Rahnella sp. WP5 around EX31_RS07140

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07130 and EX31_RS07135 are separated by 182 nucleotidesEX31_RS07135 and EX31_RS07140 are separated by 108 nucleotidesEX31_RS07140 and EX31_RS07145 are separated by 254 nucleotides EX31_RS07130: EX31_RS07130 - ABC transporter substrate-binding protein, at 218,217 to 219,155 _RS07130 EX31_RS07135: EX31_RS07135 - hypothetical protein, at 219,338 to 219,565 _RS07135 EX31_RS07140: EX31_RS07140 - oxalate/formate MFS antiporter, at 219,674 to 220,933 _RS07140 EX31_RS07145: EX31_RS07145 - serine hydrolase, at 221,188 to 222,357 _RS07145 Position (kb) 219 220 221Strain fitness (log2 ratio) -3 -2 -1 0 1at 218.867 kb on + strand, within EX31_RS07130at 218.874 kb on - strand, within EX31_RS07130at 218.923 kb on + strand, within EX31_RS07130at 218.932 kb on - strand, within EX31_RS07130at 219.153 kb on + strandat 219.292 kb on - strandat 219.295 kb on - strandat 219.434 kb on + strand, within EX31_RS07135at 219.510 kb on + strand, within EX31_RS07135at 219.518 kb on + strand, within EX31_RS07135at 219.661 kb on - strandat 219.672 kb on - strandat 219.773 kb on + strandat 219.773 kb on + strandat 219.774 kb on - strandat 219.774 kb on - strandat 219.774 kb on - strandat 219.802 kb on - strand, within EX31_RS07140at 219.840 kb on - strand, within EX31_RS07140at 219.854 kb on - strand, within EX31_RS07140at 219.854 kb on - strand, within EX31_RS07140at 219.854 kb on - strand, within EX31_RS07140at 219.856 kb on - strand, within EX31_RS07140at 219.856 kb on - strand, within EX31_RS07140at 219.856 kb on - strand, within EX31_RS07140at 219.856 kb on - strand, within EX31_RS07140at 219.856 kb on - strand, within EX31_RS07140at 219.856 kb on - strand, within EX31_RS07140at 219.872 kb on - strand, within EX31_RS07140at 220.418 kb on - strand, within EX31_RS07140at 220.418 kb on - strand, within EX31_RS07140at 220.564 kb on - strand, within EX31_RS07140at 220.564 kb on - strand, within EX31_RS07140at 220.600 kb on - strand, within EX31_RS07140at 220.600 kb on - strand, within EX31_RS07140at 220.609 kb on - strand, within EX31_RS07140at 220.609 kb on - strand, within EX31_RS07140at 220.618 kb on + strand, within EX31_RS07140at 220.622 kb on - strand, within EX31_RS07140at 220.662 kb on - strand, within EX31_RS07140at 220.748 kb on + strand, within EX31_RS07140at 220.755 kb on - strand, within EX31_RS07140at 220.755 kb on - strand, within EX31_RS07140at 220.766 kb on - strand, within EX31_RS07140at 220.833 kb on + strandat 220.834 kb on - strandat 220.948 kb on - strandat 221.050 kb on - strandat 221.077 kb on + strandat 221.207 kb on + strandat 221.208 kb on - strandat 221.208 kb on - strandat 221.293 kb on + strandat 221.293 kb on + strandat 221.294 kb on - strandat 221.294 kb on - strandat 221.294 kb on - strandat 221.294 kb on - strandat 221.294 kb on - strandat 221.294 kb on - strandat 221.294 kb on - strandat 221.301 kb on + strandat 221.302 kb on - strandat 221.302 kb on - strandat 221.302 kb on - strandat 221.302 kb on - strandat 221.363 kb on + strand, within EX31_RS07145at 221.364 kb on - strand, within EX31_RS07145at 221.380 kb on - strand, within EX31_RS07145at 221.446 kb on - strand, within EX31_RS07145at 221.508 kb on + strand, within EX31_RS07145at 221.510 kb on + strand, within EX31_RS07145at 221.510 kb on + strand, within EX31_RS07145at 221.730 kb on - strand, within EX31_RS07145at 221.750 kb on + strand, within EX31_RS07145at 221.754 kb on + strand, within EX31_RS07145at 221.755 kb on - strand, within EX31_RS07145at 221.908 kb on + strand, within EX31_RS07145at 221.909 kb on - strand, within EX31_RS07145

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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218,867 + EX31_RS07130 0.69 -0.0
218,874 - EX31_RS07130 0.70 +0.7
218,923 + EX31_RS07130 0.75 +0.1
218,932 - EX31_RS07130 0.76 +0.2
219,153 + +1.5
219,292 - -0.2
219,295 - +0.8
219,434 + EX31_RS07135 0.42 +0.9
219,510 + EX31_RS07135 0.75 -1.9
219,518 + EX31_RS07135 0.79 -0.7
219,661 - -2.1
219,672 - +0.1
219,773 + +0.7
219,773 + -0.3
219,774 - +0.1
219,774 - -2.4
219,774 - -0.3
219,802 - EX31_RS07140 0.10 -1.3
219,840 - EX31_RS07140 0.13 +0.1
219,854 - EX31_RS07140 0.14 +0.4
219,854 - EX31_RS07140 0.14 -0.1
219,854 - EX31_RS07140 0.14 -2.2
219,856 - EX31_RS07140 0.14 -0.2
219,856 - EX31_RS07140 0.14 -2.8
219,856 - EX31_RS07140 0.14 -1.1
219,856 - EX31_RS07140 0.14 +0.5
219,856 - EX31_RS07140 0.14 +1.2
219,856 - EX31_RS07140 0.14 +0.3
219,872 - EX31_RS07140 0.16 -0.0
220,418 - EX31_RS07140 0.59 -0.7
220,418 - EX31_RS07140 0.59 -1.3
220,564 - EX31_RS07140 0.71 +0.6
220,564 - EX31_RS07140 0.71 -0.9
220,600 - EX31_RS07140 0.73 -0.2
220,600 - EX31_RS07140 0.73 -0.5
220,609 - EX31_RS07140 0.74 -1.1
220,609 - EX31_RS07140 0.74 -1.2
220,618 + EX31_RS07140 0.75 -0.7
220,622 - EX31_RS07140 0.75 -0.2
220,662 - EX31_RS07140 0.78 +0.1
220,748 + EX31_RS07140 0.85 -0.3
220,755 - EX31_RS07140 0.86 -0.5
220,755 - EX31_RS07140 0.86 -2.2
220,766 - EX31_RS07140 0.87 -1.4
220,833 + +0.4
220,834 - +1.3
220,948 - +0.2
221,050 - -0.1
221,077 + +1.0
221,207 + +0.4
221,208 - -0.4
221,208 - +0.6
221,293 + -1.8
221,293 + +0.1
221,294 - -1.2
221,294 - -0.4
221,294 - -0.8
221,294 - -1.6
221,294 - -0.7
221,294 - -1.2
221,294 - -0.7
221,301 + -0.5
221,302 - -0.7
221,302 - +0.1
221,302 - -0.1
221,302 - +0.7
221,363 + EX31_RS07145 0.15 +0.2
221,364 - EX31_RS07145 0.15 -1.0
221,380 - EX31_RS07145 0.16 -2.9
221,446 - EX31_RS07145 0.22 +1.0
221,508 + EX31_RS07145 0.27 -0.0
221,510 + EX31_RS07145 0.28 +1.1
221,510 + EX31_RS07145 0.28 -0.1
221,730 - EX31_RS07145 0.46 -0.3
221,750 + EX31_RS07145 0.48 +0.5
221,754 + EX31_RS07145 0.48 +1.5
221,755 - EX31_RS07145 0.48 +0.2
221,908 + EX31_RS07145 0.62 +1.4
221,909 - EX31_RS07145 0.62 -0.1

Or see this region's nucleotide sequence