Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07120 and EX31_RS07125 are separated by 200 nucleotides EX31_RS07125 and EX31_RS07130 are separated by 9 nucleotides
EX31_RS07120: EX31_RS07120 - LysR family transcriptional regulator, at 216,016 to 216,909
_RS07120
EX31_RS07125: EX31_RS07125 - LLM class flavin-dependent oxidoreductase, at 217,110 to 218,207
_RS07125
EX31_RS07130: EX31_RS07130 - ABC transporter substrate-binding protein, at 218,217 to 219,155
_RS07130
Position (kb) 217
218
219 Strain fitness (log2 ratio) -2
-1
0
1
2 at 216.225 kb on + strand, within EX31_RS07120 at 216.225 kb on + strand, within EX31_RS07120 at 216.225 kb on + strand, within EX31_RS07120 at 216.226 kb on - strand, within EX31_RS07120 at 216.408 kb on - strand, within EX31_RS07120 at 216.689 kb on + strand, within EX31_RS07120 at 216.689 kb on + strand, within EX31_RS07120 at 216.690 kb on - strand, within EX31_RS07120 at 216.827 kb on - strand at 216.907 kb on + strand at 217.046 kb on - strand at 217.053 kb on + strand at 217.054 kb on - strand at 217.054 kb on - strand at 217.110 kb on - strand at 217.124 kb on + strand at 217.125 kb on - strand at 217.131 kb on - strand at 217.421 kb on + strand, within EX31_RS07125 at 217.422 kb on - strand, within EX31_RS07125 at 217.467 kb on + strand, within EX31_RS07125 at 217.467 kb on + strand, within EX31_RS07125 at 217.467 kb on + strand, within EX31_RS07125 at 217.467 kb on + strand, within EX31_RS07125 at 217.468 kb on - strand, within EX31_RS07125 at 217.506 kb on + strand, within EX31_RS07125 at 217.506 kb on + strand, within EX31_RS07125 at 217.507 kb on - strand, within EX31_RS07125 at 217.507 kb on - strand, within EX31_RS07125 at 217.769 kb on + strand, within EX31_RS07125 at 218.055 kb on + strand, within EX31_RS07125 at 218.294 kb on + strand at 218.351 kb on + strand, within EX31_RS07130 at 218.352 kb on - strand, within EX31_RS07130 at 218.470 kb on + strand, within EX31_RS07130 at 218.867 kb on + strand, within EX31_RS07130 at 218.874 kb on - strand, within EX31_RS07130 at 218.923 kb on + strand, within EX31_RS07130 at 218.932 kb on - strand, within EX31_RS07130 at 219.153 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 216,225 + EX31_RS07120 0.23 +0.6 216,225 + EX31_RS07120 0.23 -0.4 216,225 + EX31_RS07120 0.23 +0.5 216,226 - EX31_RS07120 0.23 +0.3 216,408 - EX31_RS07120 0.44 +0.4 216,689 + EX31_RS07120 0.75 +0.9 216,689 + EX31_RS07120 0.75 -1.5 216,690 - EX31_RS07120 0.75 +1.8 216,827 - +0.0 216,907 + +1.1 217,046 - -0.2 217,053 + +0.1 217,054 - -0.6 217,054 - -0.0 217,110 - +2.1 217,124 + -0.4 217,125 - +0.4 217,131 - +0.1 217,421 + EX31_RS07125 0.28 +1.7 217,422 - EX31_RS07125 0.28 -1.4 217,467 + EX31_RS07125 0.33 -0.9 217,467 + EX31_RS07125 0.33 -1.1 217,467 + EX31_RS07125 0.33 +0.6 217,467 + EX31_RS07125 0.33 +0.2 217,468 - EX31_RS07125 0.33 -0.5 217,506 + EX31_RS07125 0.36 -1.9 217,506 + EX31_RS07125 0.36 -0.5 217,507 - EX31_RS07125 0.36 +0.3 217,507 - EX31_RS07125 0.36 -2.5 217,769 + EX31_RS07125 0.60 -1.0 218,055 + EX31_RS07125 0.86 -0.4 218,294 + +0.5 218,351 + EX31_RS07130 0.14 -0.1 218,352 - EX31_RS07130 0.14 -0.6 218,470 + EX31_RS07130 0.27 +0.9 218,867 + EX31_RS07130 0.69 -0.0 218,874 - EX31_RS07130 0.70 +0.7 218,923 + EX31_RS07130 0.75 +0.1 218,932 - EX31_RS07130 0.76 +0.2 219,153 + +1.5
Or see this region's nucleotide sequence