Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06845 and EX31_RS06850 are separated by 129 nucleotides EX31_RS06850 and EX31_RS06855 are separated by 79 nucleotides
EX31_RS06845: EX31_RS06845 - MmgE/PrpD family protein, at 156,336 to 157,691
_RS06845
EX31_RS06850: EX31_RS06850 - oxidoreductase, at 157,821 to 158,867
_RS06850
EX31_RS06855: EX31_RS06855 - bile acid:sodium symporter, at 158,947 to 159,966
_RS06855
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1
2 at 156.853 kb on + strand, within EX31_RS06845 at 156.929 kb on + strand, within EX31_RS06845 at 157.036 kb on + strand, within EX31_RS06845 at 157.156 kb on - strand, within EX31_RS06845 at 157.392 kb on - strand, within EX31_RS06845 at 157.630 kb on + strand at 157.667 kb on + strand at 157.670 kb on + strand at 157.804 kb on + strand at 157.869 kb on - strand at 158.042 kb on + strand, within EX31_RS06850 at 158.042 kb on + strand, within EX31_RS06850 at 158.116 kb on + strand, within EX31_RS06850 at 158.259 kb on + strand, within EX31_RS06850 at 158.274 kb on + strand, within EX31_RS06850 at 158.274 kb on + strand, within EX31_RS06850 at 158.283 kb on + strand, within EX31_RS06850 at 158.422 kb on + strand, within EX31_RS06850 at 158.452 kb on - strand, within EX31_RS06850 at 158.560 kb on - strand, within EX31_RS06850 at 158.658 kb on - strand, within EX31_RS06850 at 158.715 kb on + strand, within EX31_RS06850 at 158.724 kb on + strand, within EX31_RS06850 at 158.724 kb on + strand, within EX31_RS06850 at 158.724 kb on + strand, within EX31_RS06850 at 158.725 kb on - strand, within EX31_RS06850 at 158.727 kb on + strand, within EX31_RS06850 at 158.865 kb on + strand at 158.865 kb on + strand at 158.887 kb on - strand at 158.887 kb on - strand at 158.887 kb on - strand at 158.887 kb on - strand at 158.887 kb on - strand at 159.041 kb on - strand at 159.041 kb on - strand at 159.059 kb on - strand, within EX31_RS06855 at 159.094 kb on - strand, within EX31_RS06855 at 159.254 kb on - strand, within EX31_RS06855 at 159.307 kb on + strand, within EX31_RS06855 at 159.308 kb on - strand, within EX31_RS06855 at 159.309 kb on + strand, within EX31_RS06855 at 159.309 kb on + strand, within EX31_RS06855 at 159.309 kb on + strand, within EX31_RS06855 at 159.310 kb on - strand, within EX31_RS06855 at 159.310 kb on - strand, within EX31_RS06855 at 159.414 kb on + strand, within EX31_RS06855 at 159.414 kb on + strand, within EX31_RS06855 at 159.414 kb on + strand, within EX31_RS06855 at 159.414 kb on + strand, within EX31_RS06855 at 159.415 kb on - strand, within EX31_RS06855 at 159.456 kb on + strand, within EX31_RS06855 at 159.457 kb on - strand, within EX31_RS06855 at 159.457 kb on - strand, within EX31_RS06855 at 159.457 kb on - strand, within EX31_RS06855 at 159.581 kb on + strand, within EX31_RS06855 at 159.581 kb on + strand, within EX31_RS06855 at 159.583 kb on + strand, within EX31_RS06855 at 159.583 kb on + strand, within EX31_RS06855 at 159.583 kb on + strand, within EX31_RS06855 at 159.583 kb on + strand, within EX31_RS06855 at 159.583 kb on + strand, within EX31_RS06855 at 159.584 kb on - strand, within EX31_RS06855 at 159.584 kb on - strand, within EX31_RS06855 at 159.584 kb on - strand, within EX31_RS06855 at 159.584 kb on - strand, within EX31_RS06855 at 159.703 kb on + strand, within EX31_RS06855 at 159.703 kb on + strand, within EX31_RS06855 at 159.703 kb on + strand, within EX31_RS06855
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 156,853 + EX31_RS06845 0.38 +0.5 156,929 + EX31_RS06845 0.44 +0.6 157,036 + EX31_RS06845 0.52 -1.4 157,156 - EX31_RS06845 0.60 -0.7 157,392 - EX31_RS06845 0.78 +0.2 157,630 + -0.9 157,667 + +0.8 157,670 + -1.3 157,804 + +0.5 157,869 - +1.4 158,042 + EX31_RS06850 0.21 -0.8 158,042 + EX31_RS06850 0.21 -0.5 158,116 + EX31_RS06850 0.28 +0.4 158,259 + EX31_RS06850 0.42 -1.7 158,274 + EX31_RS06850 0.43 +1.3 158,274 + EX31_RS06850 0.43 -0.7 158,283 + EX31_RS06850 0.44 -1.0 158,422 + EX31_RS06850 0.57 -0.7 158,452 - EX31_RS06850 0.60 -0.3 158,560 - EX31_RS06850 0.71 -1.0 158,658 - EX31_RS06850 0.80 -0.1 158,715 + EX31_RS06850 0.85 +2.6 158,724 + EX31_RS06850 0.86 +0.3 158,724 + EX31_RS06850 0.86 -0.4 158,724 + EX31_RS06850 0.86 -0.7 158,725 - EX31_RS06850 0.86 -0.9 158,727 + EX31_RS06850 0.87 -2.7 158,865 + +0.8 158,865 + -1.9 158,887 - +0.3 158,887 - +1.1 158,887 - -0.9 158,887 - +0.4 158,887 - -1.1 159,041 - -0.3 159,041 - +0.0 159,059 - EX31_RS06855 0.11 -0.6 159,094 - EX31_RS06855 0.14 +0.4 159,254 - EX31_RS06855 0.30 +0.3 159,307 + EX31_RS06855 0.35 +1.1 159,308 - EX31_RS06855 0.35 -0.7 159,309 + EX31_RS06855 0.35 -0.2 159,309 + EX31_RS06855 0.35 -0.2 159,309 + EX31_RS06855 0.35 +0.2 159,310 - EX31_RS06855 0.36 +0.0 159,310 - EX31_RS06855 0.36 +1.3 159,414 + EX31_RS06855 0.46 -1.3 159,414 + EX31_RS06855 0.46 +0.2 159,414 + EX31_RS06855 0.46 +0.3 159,414 + EX31_RS06855 0.46 +2.4 159,415 - EX31_RS06855 0.46 -0.8 159,456 + EX31_RS06855 0.50 -0.2 159,457 - EX31_RS06855 0.50 +0.1 159,457 - EX31_RS06855 0.50 +0.4 159,457 - EX31_RS06855 0.50 +0.8 159,581 + EX31_RS06855 0.62 +0.9 159,581 + EX31_RS06855 0.62 -1.7 159,583 + EX31_RS06855 0.62 -0.3 159,583 + EX31_RS06855 0.62 -0.7 159,583 + EX31_RS06855 0.62 +0.7 159,583 + EX31_RS06855 0.62 +0.6 159,583 + EX31_RS06855 0.62 +0.6 159,584 - EX31_RS06855 0.62 -0.7 159,584 - EX31_RS06855 0.62 +0.6 159,584 - EX31_RS06855 0.62 -1.0 159,584 - EX31_RS06855 0.62 -2.2 159,703 + EX31_RS06855 0.74 +0.8 159,703 + EX31_RS06855 0.74 +1.5 159,703 + EX31_RS06855 0.74 -1.7
Or see this region's nucleotide sequence