Strain Fitness in Rahnella sp. WP5 around EX31_RS06715

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06710 and EX31_RS06715 are separated by 418 nucleotidesEX31_RS06715 and EX31_RS06720 overlap by 4 nucleotides EX31_RS06710: EX31_RS06710 - cellulose biosynthesis protein BcsC, at 123,916 to 127,206 _RS06710 EX31_RS06715: EX31_RS06715 - N-formylglutamate deformylase, at 127,625 to 128,461 _RS06715 EX31_RS06720: EX31_RS06720 - imidazolonepropionase, at 128,458 to 129,720 _RS06720 Position (kb) 127 128 129Strain fitness (log2 ratio) -2 -1 0 1 2at 126.697 kb on + strand, within EX31_RS06710at 126.698 kb on - strand, within EX31_RS06710at 126.700 kb on + strand, within EX31_RS06710at 126.701 kb on - strand, within EX31_RS06710at 126.701 kb on - strand, within EX31_RS06710at 126.763 kb on + strand, within EX31_RS06710at 126.785 kb on - strand, within EX31_RS06710at 126.785 kb on - strand, within EX31_RS06710at 126.808 kb on + strand, within EX31_RS06710at 126.808 kb on + strand, within EX31_RS06710at 126.808 kb on + strand, within EX31_RS06710at 126.809 kb on - strand, within EX31_RS06710at 126.851 kb on - strand, within EX31_RS06710at 127.017 kb on + strandat 127.017 kb on + strandat 127.017 kb on + strandat 127.018 kb on - strandat 127.123 kb on + strandat 127.181 kb on + strandat 127.201 kb on - strandat 127.223 kb on - strandat 127.223 kb on - strandat 127.223 kb on - strandat 127.564 kb on - strandat 127.642 kb on + strandat 127.645 kb on - strandat 127.726 kb on - strand, within EX31_RS06715at 127.752 kb on + strand, within EX31_RS06715at 127.752 kb on + strand, within EX31_RS06715at 127.752 kb on + strand, within EX31_RS06715at 127.753 kb on - strand, within EX31_RS06715at 127.753 kb on - strand, within EX31_RS06715at 127.753 kb on - strand, within EX31_RS06715at 127.753 kb on - strand, within EX31_RS06715at 127.822 kb on + strand, within EX31_RS06715at 127.823 kb on - strand, within EX31_RS06715at 127.824 kb on + strand, within EX31_RS06715at 127.824 kb on + strand, within EX31_RS06715at 127.835 kb on - strand, within EX31_RS06715at 127.846 kb on + strand, within EX31_RS06715at 127.846 kb on + strand, within EX31_RS06715at 128.154 kb on - strand, within EX31_RS06715at 128.154 kb on - strand, within EX31_RS06715at 128.167 kb on - strand, within EX31_RS06715at 128.188 kb on + strand, within EX31_RS06715at 128.190 kb on + strand, within EX31_RS06715at 128.191 kb on - strand, within EX31_RS06715at 128.387 kb on - strandat 128.407 kb on + strandat 128.408 kb on - strandat 128.480 kb on - strandat 128.480 kb on - strandat 128.563 kb on + strandat 128.564 kb on - strandat 128.682 kb on + strand, within EX31_RS06720at 128.682 kb on + strand, within EX31_RS06720at 128.682 kb on + strand, within EX31_RS06720at 128.683 kb on - strand, within EX31_RS06720at 128.683 kb on - strand, within EX31_RS06720at 128.816 kb on + strand, within EX31_RS06720at 128.833 kb on + strand, within EX31_RS06720at 128.969 kb on - strand, within EX31_RS06720at 129.003 kb on + strand, within EX31_RS06720at 129.098 kb on - strand, within EX31_RS06720at 129.120 kb on + strand, within EX31_RS06720at 129.121 kb on - strand, within EX31_RS06720at 129.121 kb on - strand, within EX31_RS06720at 129.122 kb on + strand, within EX31_RS06720at 129.122 kb on + strand, within EX31_RS06720at 129.123 kb on - strand, within EX31_RS06720at 129.123 kb on - strand, within EX31_RS06720at 129.248 kb on - strand, within EX31_RS06720at 129.271 kb on - strand, within EX31_RS06720at 129.311 kb on - strand, within EX31_RS06720at 129.311 kb on - strand, within EX31_RS06720

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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126,697 + EX31_RS06710 0.85 -0.5
126,698 - EX31_RS06710 0.85 -1.6
126,700 + EX31_RS06710 0.85 +0.8
126,701 - EX31_RS06710 0.85 +0.0
126,701 - EX31_RS06710 0.85 +1.3
126,763 + EX31_RS06710 0.87 -0.2
126,785 - EX31_RS06710 0.87 -2.0
126,785 - EX31_RS06710 0.87 +0.4
126,808 + EX31_RS06710 0.88 -1.0
126,808 + EX31_RS06710 0.88 +0.8
126,808 + EX31_RS06710 0.88 -0.2
126,809 - EX31_RS06710 0.88 -1.3
126,851 - EX31_RS06710 0.89 -0.0
127,017 + -0.3
127,017 + +1.2
127,017 + -2.2
127,018 - +0.1
127,123 + +2.1
127,181 + +0.3
127,201 - +1.0
127,223 - +0.5
127,223 - +0.3
127,223 - -0.7
127,564 - +0.1
127,642 + -2.2
127,645 - +0.7
127,726 - EX31_RS06715 0.12 -1.4
127,752 + EX31_RS06715 0.15 -0.3
127,752 + EX31_RS06715 0.15 -1.1
127,752 + EX31_RS06715 0.15 -0.9
127,753 - EX31_RS06715 0.15 -0.4
127,753 - EX31_RS06715 0.15 -1.3
127,753 - EX31_RS06715 0.15 -0.1
127,753 - EX31_RS06715 0.15 -0.9
127,822 + EX31_RS06715 0.24 -1.9
127,823 - EX31_RS06715 0.24 +1.0
127,824 + EX31_RS06715 0.24 -0.7
127,824 + EX31_RS06715 0.24 +0.7
127,835 - EX31_RS06715 0.25 -0.3
127,846 + EX31_RS06715 0.26 -0.6
127,846 + EX31_RS06715 0.26 -0.3
128,154 - EX31_RS06715 0.63 -1.7
128,154 - EX31_RS06715 0.63 +0.9
128,167 - EX31_RS06715 0.65 +0.1
128,188 + EX31_RS06715 0.67 +0.1
128,190 + EX31_RS06715 0.68 -0.9
128,191 - EX31_RS06715 0.68 +0.0
128,387 - +0.3
128,407 + -1.1
128,408 - +0.7
128,480 - -2.3
128,480 - -1.0
128,563 + -2.4
128,564 - -0.1
128,682 + EX31_RS06720 0.18 +0.7
128,682 + EX31_RS06720 0.18 -0.4
128,682 + EX31_RS06720 0.18 +0.9
128,683 - EX31_RS06720 0.18 +1.0
128,683 - EX31_RS06720 0.18 -0.5
128,816 + EX31_RS06720 0.28 -1.5
128,833 + EX31_RS06720 0.30 -0.0
128,969 - EX31_RS06720 0.40 +0.2
129,003 + EX31_RS06720 0.43 -0.5
129,098 - EX31_RS06720 0.51 -2.7
129,120 + EX31_RS06720 0.52 +0.2
129,121 - EX31_RS06720 0.52 +0.1
129,121 - EX31_RS06720 0.52 -1.7
129,122 + EX31_RS06720 0.53 +0.2
129,122 + EX31_RS06720 0.53 -2.0
129,123 - EX31_RS06720 0.53 +1.0
129,123 - EX31_RS06720 0.53 -0.7
129,248 - EX31_RS06720 0.63 -1.2
129,271 - EX31_RS06720 0.64 -0.7
129,311 - EX31_RS06720 0.68 +0.3
129,311 - EX31_RS06720 0.68 -1.1

Or see this region's nucleotide sequence