Strain Fitness in Rahnella sp. WP5 around EX31_RS06345

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06335 and EX31_RS06340 are separated by 77 nucleotidesEX31_RS06340 and EX31_RS06345 are separated by 136 nucleotidesEX31_RS06345 and EX31_RS06350 are separated by 145 nucleotides EX31_RS06335: EX31_RS06335 - transcriptional regulator TyrR, at 29,375 to 30,949 _RS06335 EX31_RS06340: EX31_RS06340 - thiol peroxidase, at 31,027 to 31,530 _RS06340 EX31_RS06345: EX31_RS06345 - L-Ala-D/L-Glu epimerase, at 31,667 to 32,644 _RS06345 EX31_RS06350: EX31_RS06350 - peptide ABC transporter substrate-binding protein, at 32,790 to 34,424 _RS06350 Position (kb) 31 32 33Strain fitness (log2 ratio) -2 -1 0 1 2 3at 30.699 kb on + strand, within EX31_RS06335at 30.700 kb on - strand, within EX31_RS06335at 30.747 kb on + strand, within EX31_RS06335at 30.830 kb on + strandat 30.845 kb on - strandat 30.947 kb on + strandat 30.976 kb on - strandat 31.018 kb on - strandat 31.018 kb on - strandat 31.018 kb on - strandat 31.029 kb on - strandat 31.094 kb on + strand, within EX31_RS06340at 31.094 kb on + strand, within EX31_RS06340at 31.390 kb on - strand, within EX31_RS06340at 31.517 kb on - strandat 31.534 kb on + strandat 31.535 kb on - strandat 31.541 kb on + strandat 31.586 kb on + strandat 31.586 kb on + strandat 31.587 kb on - strandat 31.597 kb on + strandat 31.598 kb on - strandat 31.598 kb on - strandat 31.602 kb on + strandat 31.602 kb on + strandat 31.612 kb on + strandat 31.612 kb on + strandat 31.613 kb on - strandat 31.613 kb on - strandat 31.613 kb on - strandat 31.613 kb on - strandat 31.619 kb on + strandat 31.620 kb on - strandat 31.620 kb on - strandat 31.620 kb on - strandat 31.623 kb on + strandat 31.623 kb on + strandat 31.633 kb on - strandat 31.686 kb on - strandat 31.704 kb on + strandat 31.704 kb on + strandat 31.705 kb on - strandat 31.705 kb on - strandat 31.817 kb on + strand, within EX31_RS06345at 31.872 kb on + strand, within EX31_RS06345at 31.872 kb on + strand, within EX31_RS06345at 31.872 kb on + strand, within EX31_RS06345at 31.872 kb on + strand, within EX31_RS06345at 31.873 kb on - strand, within EX31_RS06345at 31.873 kb on - strand, within EX31_RS06345at 31.873 kb on - strand, within EX31_RS06345at 31.873 kb on - strand, within EX31_RS06345at 31.908 kb on + strand, within EX31_RS06345at 32.040 kb on + strand, within EX31_RS06345at 32.040 kb on + strand, within EX31_RS06345at 32.040 kb on + strand, within EX31_RS06345at 32.041 kb on - strand, within EX31_RS06345at 32.041 kb on - strand, within EX31_RS06345at 32.041 kb on - strand, within EX31_RS06345at 32.041 kb on - strand, within EX31_RS06345at 32.404 kb on + strand, within EX31_RS06345at 32.405 kb on - strand, within EX31_RS06345at 32.545 kb on + strand, within EX31_RS06345at 32.552 kb on - strandat 32.739 kb on - strandat 32.763 kb on + strandat 32.763 kb on + strandat 32.818 kb on + strandat 32.930 kb on + strandat 33.086 kb on - strand, within EX31_RS06350at 33.100 kb on + strand, within EX31_RS06350at 33.157 kb on - strand, within EX31_RS06350at 33.158 kb on + strand, within EX31_RS06350at 33.158 kb on + strand, within EX31_RS06350at 33.158 kb on + strand, within EX31_RS06350at 33.158 kb on + strand, within EX31_RS06350at 33.159 kb on - strand, within EX31_RS06350at 33.270 kb on - strand, within EX31_RS06350at 33.444 kb on + strand, within EX31_RS06350at 33.501 kb on + strand, within EX31_RS06350at 33.627 kb on + strand, within EX31_RS06350

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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30,699 + EX31_RS06335 0.84 -1.7
30,700 - EX31_RS06335 0.84 +0.7
30,747 + EX31_RS06335 0.87 -1.2
30,830 + +0.5
30,845 - -0.0
30,947 + -0.0
30,976 - -0.6
31,018 - +1.3
31,018 - +0.2
31,018 - +0.4
31,029 - +0.4
31,094 + EX31_RS06340 0.13 -0.1
31,094 + EX31_RS06340 0.13 -1.0
31,390 - EX31_RS06340 0.72 -1.0
31,517 - +0.7
31,534 + -1.6
31,535 - +0.9
31,541 + -1.0
31,586 + -1.2
31,586 + -2.3
31,587 - +0.2
31,597 + -0.3
31,598 - +0.2
31,598 - +3.2
31,602 + +0.8
31,602 + -0.4
31,612 + -0.1
31,612 + +0.1
31,613 - -0.3
31,613 - +0.8
31,613 - -0.1
31,613 - +0.8
31,619 + -0.0
31,620 - -1.2
31,620 - -0.2
31,620 - -1.5
31,623 + +0.4
31,623 + +1.1
31,633 - +0.2
31,686 - -0.5
31,704 + -0.2
31,704 + +1.5
31,705 - -1.0
31,705 - +0.6
31,817 + EX31_RS06345 0.15 +0.5
31,872 + EX31_RS06345 0.21 -0.8
31,872 + EX31_RS06345 0.21 +0.4
31,872 + EX31_RS06345 0.21 -0.2
31,872 + EX31_RS06345 0.21 -2.1
31,873 - EX31_RS06345 0.21 -1.7
31,873 - EX31_RS06345 0.21 -0.7
31,873 - EX31_RS06345 0.21 -1.3
31,873 - EX31_RS06345 0.21 +0.9
31,908 + EX31_RS06345 0.25 -2.5
32,040 + EX31_RS06345 0.38 -1.4
32,040 + EX31_RS06345 0.38 -0.4
32,040 + EX31_RS06345 0.38 -0.5
32,041 - EX31_RS06345 0.38 -0.7
32,041 - EX31_RS06345 0.38 +0.6
32,041 - EX31_RS06345 0.38 -0.7
32,041 - EX31_RS06345 0.38 -2.2
32,404 + EX31_RS06345 0.75 -1.5
32,405 - EX31_RS06345 0.75 -1.3
32,545 + EX31_RS06345 0.90 +0.6
32,552 - +0.9
32,739 - +1.3
32,763 + +0.9
32,763 + -0.3
32,818 + -0.0
32,930 + -1.6
33,086 - EX31_RS06350 0.18 -1.9
33,100 + EX31_RS06350 0.19 +0.1
33,157 - EX31_RS06350 0.22 -0.0
33,158 + EX31_RS06350 0.23 -0.5
33,158 + EX31_RS06350 0.23 -1.0
33,158 + EX31_RS06350 0.23 -0.5
33,158 + EX31_RS06350 0.23 -0.2
33,159 - EX31_RS06350 0.23 +1.6
33,270 - EX31_RS06350 0.29 -1.9
33,444 + EX31_RS06350 0.40 +0.6
33,501 + EX31_RS06350 0.43 +0.8
33,627 + EX31_RS06350 0.51 -1.0

Or see this region's nucleotide sequence