Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05555 and EX31_RS05560 are separated by 211 nucleotides EX31_RS05560 and EX31_RS05565 overlap by 32 nucleotides EX31_RS05565 and EX31_RS05570 are separated by 81 nucleotides EX31_RS05570 and EX31_RS05575 are separated by 6 nucleotides
EX31_RS05555: EX31_RS05555 - MmgE/PrpD family protein, at 265,811 to 267,190
_RS05555
EX31_RS05560: EX31_RS05560 - ParD-like family protein, at 267,402 to 267,638
_RS05560
EX31_RS05565: EX31_RS05565 - type II toxin-antitoxin system RelE/ParE family toxin, at 267,607 to 267,936
_RS05565
EX31_RS05570: EX31_RS05570 - type II toxin-antitoxin system PrlF family antitoxin, at 268,018 to 268,362
_RS05570
EX31_RS05575: EX31_RS05575 - type II toxin-antitoxin system YhaV family toxin, at 268,369 to 268,845
_RS05575
Position (kb) 267
268 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 266.704 kb on + strand, within EX31_RS05555 at 266.704 kb on + strand, within EX31_RS05555 at 266.704 kb on + strand, within EX31_RS05555 at 266.705 kb on - strand, within EX31_RS05555 at 266.705 kb on - strand, within EX31_RS05555 at 266.705 kb on - strand, within EX31_RS05555 at 266.705 kb on - strand, within EX31_RS05555 at 266.786 kb on + strand, within EX31_RS05555 at 266.786 kb on + strand, within EX31_RS05555 at 266.787 kb on - strand, within EX31_RS05555 at 266.887 kb on - strand, within EX31_RS05555 at 266.901 kb on - strand, within EX31_RS05555 at 266.901 kb on - strand, within EX31_RS05555 at 266.901 kb on - strand, within EX31_RS05555 at 266.901 kb on - strand, within EX31_RS05555 at 266.902 kb on + strand, within EX31_RS05555 at 266.903 kb on - strand, within EX31_RS05555 at 266.962 kb on + strand, within EX31_RS05555 at 266.963 kb on - strand, within EX31_RS05555 at 266.963 kb on - strand, within EX31_RS05555 at 266.963 kb on - strand, within EX31_RS05555 at 266.963 kb on - strand, within EX31_RS05555 at 266.985 kb on + strand, within EX31_RS05555 at 266.986 kb on - strand, within EX31_RS05555 at 266.986 kb on - strand, within EX31_RS05555 at 266.986 kb on - strand, within EX31_RS05555 at 267.135 kb on + strand at 267.144 kb on + strand at 267.269 kb on + strand at 267.269 kb on + strand at 267.270 kb on - strand at 267.270 kb on - strand at 267.270 kb on - strand at 267.270 kb on - strand at 267.270 kb on - strand at 267.270 kb on - strand at 267.273 kb on + strand at 267.273 kb on + strand at 267.273 kb on + strand at 267.273 kb on + strand at 267.273 kb on + strand at 267.274 kb on - strand at 267.288 kb on - strand at 267.345 kb on + strand at 267.346 kb on - strand at 267.355 kb on + strand at 267.379 kb on + strand at 267.413 kb on + strand at 267.413 kb on + strand at 267.414 kb on - strand at 267.421 kb on + strand at 267.421 kb on + strand at 267.422 kb on - strand at 267.422 kb on - strand at 267.446 kb on - strand, within EX31_RS05560 at 267.446 kb on - strand, within EX31_RS05560 at 267.446 kb on - strand, within EX31_RS05560 at 267.451 kb on + strand, within EX31_RS05560 at 267.451 kb on + strand, within EX31_RS05560 at 267.452 kb on - strand, within EX31_RS05560 at 267.452 kb on - strand, within EX31_RS05560 at 267.452 kb on - strand, within EX31_RS05560 at 267.551 kb on + strand, within EX31_RS05560 at 267.552 kb on - strand, within EX31_RS05560 at 267.552 kb on - strand, within EX31_RS05560 at 267.587 kb on + strand, within EX31_RS05560 at 267.588 kb on - strand, within EX31_RS05560 at 267.588 kb on - strand, within EX31_RS05560 at 267.599 kb on - strand, within EX31_RS05560 at 267.606 kb on + strand, within EX31_RS05560 at 267.606 kb on + strand, within EX31_RS05560 at 267.639 kb on + strand at 267.639 kb on + strand at 267.639 kb on + strand at 267.640 kb on - strand, within EX31_RS05565 at 267.640 kb on - strand, within EX31_RS05565 at 267.640 kb on - strand, within EX31_RS05565 at 267.640 kb on - strand, within EX31_RS05565 at 267.640 kb on - strand, within EX31_RS05565 at 267.725 kb on + strand, within EX31_RS05565 at 267.725 kb on + strand, within EX31_RS05565 at 267.725 kb on + strand, within EX31_RS05565 at 267.753 kb on + strand, within EX31_RS05565 at 267.753 kb on + strand, within EX31_RS05565 at 267.753 kb on + strand, within EX31_RS05565 at 267.753 kb on + strand, within EX31_RS05565 at 267.753 kb on + strand, within EX31_RS05565 at 267.754 kb on - strand, within EX31_RS05565 at 267.754 kb on - strand, within EX31_RS05565 at 267.772 kb on + strand, within EX31_RS05565 at 267.772 kb on + strand, within EX31_RS05565 at 267.773 kb on - strand, within EX31_RS05565 at 267.773 kb on - strand, within EX31_RS05565 at 267.786 kb on + strand, within EX31_RS05565 at 267.823 kb on + strand, within EX31_RS05565 at 267.823 kb on + strand, within EX31_RS05565 at 267.824 kb on - strand, within EX31_RS05565 at 267.824 kb on - strand, within EX31_RS05565 at 267.853 kb on + strand, within EX31_RS05565 at 267.853 kb on + strand, within EX31_RS05565 at 267.853 kb on + strand, within EX31_RS05565 at 267.853 kb on + strand, within EX31_RS05565 at 267.853 kb on + strand, within EX31_RS05565 at 267.854 kb on - strand, within EX31_RS05565 at 267.854 kb on - strand, within EX31_RS05565 at 267.854 kb on - strand, within EX31_RS05565 at 267.854 kb on - strand, within EX31_RS05565 at 267.854 kb on - strand, within EX31_RS05565 at 267.886 kb on + strand, within EX31_RS05565 at 267.887 kb on - strand, within EX31_RS05565 at 267.897 kb on + strand, within EX31_RS05565 at 267.898 kb on - strand, within EX31_RS05565 at 267.898 kb on - strand, within EX31_RS05565 at 267.934 kb on + strand at 267.972 kb on + strand at 267.994 kb on + strand at 267.994 kb on + strand at 267.994 kb on + strand at 267.994 kb on + strand at 267.994 kb on + strand at 267.994 kb on + strand at 267.994 kb on + strand at 267.995 kb on - strand at 267.995 kb on - strand at 268.004 kb on + strand at 268.005 kb on - strand at 268.018 kb on - strand at 268.018 kb on - strand at 268.018 kb on - strand at 268.018 kb on - strand at 268.018 kb on - strand at 268.018 kb on - strand at 268.018 kb on - strand at 268.018 kb on - strand at 268.018 kb on - strand at 268.034 kb on + strand at 268.174 kb on - strand, within EX31_RS05570 at 268.174 kb on - strand, within EX31_RS05570 at 268.242 kb on + strand, within EX31_RS05570 at 268.243 kb on - strand, within EX31_RS05570 at 268.243 kb on - strand, within EX31_RS05570 at 268.243 kb on - strand, within EX31_RS05570 at 268.243 kb on - strand, within EX31_RS05570 at 268.243 kb on - strand, within EX31_RS05570 at 268.243 kb on - strand, within EX31_RS05570 at 268.243 kb on - strand, within EX31_RS05570 at 268.264 kb on - strand, within EX31_RS05570 at 268.264 kb on - strand, within EX31_RS05570 at 268.264 kb on - strand, within EX31_RS05570 at 268.305 kb on - strand, within EX31_RS05570 at 268.305 kb on - strand, within EX31_RS05570 at 268.324 kb on - strand, within EX31_RS05570 at 268.360 kb on + strand at 268.360 kb on + strand at 268.369 kb on - strand at 268.369 kb on - strand at 268.369 kb on - strand at 268.369 kb on - strand at 268.436 kb on + strand, within EX31_RS05575 at 268.436 kb on + strand, within EX31_RS05575 at 268.436 kb on + strand, within EX31_RS05575 at 268.463 kb on + strand, within EX31_RS05575 at 268.463 kb on + strand, within EX31_RS05575 at 268.463 kb on + strand, within EX31_RS05575 at 268.463 kb on + strand, within EX31_RS05575 at 268.489 kb on + strand, within EX31_RS05575 at 268.491 kb on + strand, within EX31_RS05575 at 268.492 kb on - strand, within EX31_RS05575 at 268.492 kb on - strand, within EX31_RS05575 at 268.497 kb on + strand, within EX31_RS05575 at 268.498 kb on - strand, within EX31_RS05575 at 268.498 kb on - strand, within EX31_RS05575 at 268.498 kb on - strand, within EX31_RS05575 at 268.530 kb on + strand, within EX31_RS05575 at 268.530 kb on + strand, within EX31_RS05575 at 268.531 kb on - strand, within EX31_RS05575 at 268.531 kb on - strand, within EX31_RS05575 at 268.595 kb on + strand, within EX31_RS05575 at 268.595 kb on + strand, within EX31_RS05575 at 268.595 kb on + strand, within EX31_RS05575 at 268.595 kb on + strand, within EX31_RS05575 at 268.595 kb on + strand, within EX31_RS05575 at 268.595 kb on + strand, within EX31_RS05575 at 268.595 kb on + strand, within EX31_RS05575 at 268.595 kb on + strand, within EX31_RS05575 at 268.595 kb on + strand, within EX31_RS05575 at 268.595 kb on + strand, within EX31_RS05575 at 268.595 kb on + strand, within EX31_RS05575 at 268.595 kb on + strand, within EX31_RS05575 at 268.595 kb on + strand, within EX31_RS05575 at 268.596 kb on - strand, within EX31_RS05575 at 268.596 kb on - strand, within EX31_RS05575 at 268.596 kb on - strand, within EX31_RS05575 at 268.596 kb on - strand, within EX31_RS05575 at 268.596 kb on - strand, within EX31_RS05575 at 268.596 kb on - strand, within EX31_RS05575 at 268.596 kb on - strand, within EX31_RS05575 at 268.683 kb on + strand, within EX31_RS05575 at 268.683 kb on + strand, within EX31_RS05575 at 268.683 kb on + strand, within EX31_RS05575 at 268.684 kb on - strand, within EX31_RS05575 at 268.684 kb on - strand, within EX31_RS05575 at 268.684 kb on - strand, within EX31_RS05575 at 268.684 kb on - strand, within EX31_RS05575 at 268.684 kb on - strand, within EX31_RS05575 at 268.688 kb on - strand, within EX31_RS05575 at 268.707 kb on + strand, within EX31_RS05575 at 268.716 kb on - strand, within EX31_RS05575 at 268.716 kb on - strand, within EX31_RS05575 at 268.723 kb on + strand, within EX31_RS05575 at 268.745 kb on - strand, within EX31_RS05575 at 268.843 kb on + strand at 268.843 kb on + strand at 268.855 kb on + strand at 268.856 kb on - strand at 268.856 kb on - strand at 268.904 kb on - strand at 268.904 kb on - strand at 268.905 kb on + strand at 268.905 kb on + strand at 268.927 kb on - strand at 268.927 kb on - strand at 268.927 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 266,704 + EX31_RS05555 0.65 -0.8 266,704 + EX31_RS05555 0.65 -0.4 266,704 + EX31_RS05555 0.65 -0.2 266,705 - EX31_RS05555 0.65 +0.6 266,705 - EX31_RS05555 0.65 +0.2 266,705 - EX31_RS05555 0.65 +0.0 266,705 - EX31_RS05555 0.65 -1.2 266,786 + EX31_RS05555 0.71 -0.1 266,786 + EX31_RS05555 0.71 -0.5 266,787 - EX31_RS05555 0.71 -0.2 266,887 - EX31_RS05555 0.78 +0.5 266,901 - EX31_RS05555 0.79 -0.5 266,901 - EX31_RS05555 0.79 +0.9 266,901 - EX31_RS05555 0.79 -0.8 266,901 - EX31_RS05555 0.79 +0.6 266,902 + EX31_RS05555 0.79 +0.3 266,903 - EX31_RS05555 0.79 -0.4 266,962 + EX31_RS05555 0.83 -0.2 266,963 - EX31_RS05555 0.83 -1.0 266,963 - EX31_RS05555 0.83 -0.3 266,963 - EX31_RS05555 0.83 +0.5 266,963 - EX31_RS05555 0.83 -0.2 266,985 + EX31_RS05555 0.85 +1.4 266,986 - EX31_RS05555 0.85 -0.0 266,986 - EX31_RS05555 0.85 +0.1 266,986 - EX31_RS05555 0.85 +0.4 267,135 + -0.1 267,144 + +0.2 267,269 + +0.1 267,269 + +0.4 267,270 - -0.7 267,270 - -1.2 267,270 - -0.2 267,270 - +0.3 267,270 - -0.1 267,270 - -0.5 267,273 + -0.9 267,273 + -1.1 267,273 + +0.2 267,273 + +0.4 267,273 + +0.0 267,274 - +0.5 267,288 - -0.5 267,345 + +1.0 267,346 - -0.6 267,355 + -0.9 267,379 + +0.4 267,413 + +0.3 267,413 + -0.2 267,414 - +0.2 267,421 + +0.1 267,421 + +0.4 267,422 - -0.6 267,422 - -0.1 267,446 - EX31_RS05560 0.19 -0.3 267,446 - EX31_RS05560 0.19 -0.1 267,446 - EX31_RS05560 0.19 -0.1 267,451 + EX31_RS05560 0.21 -1.2 267,451 + EX31_RS05560 0.21 +0.0 267,452 - EX31_RS05560 0.21 -0.3 267,452 - EX31_RS05560 0.21 -2.1 267,452 - EX31_RS05560 0.21 +2.2 267,551 + EX31_RS05560 0.63 -0.8 267,552 - EX31_RS05560 0.63 -0.3 267,552 - EX31_RS05560 0.63 -0.6 267,587 + EX31_RS05560 0.78 -0.3 267,588 - EX31_RS05560 0.78 -0.6 267,588 - EX31_RS05560 0.78 +1.6 267,599 - EX31_RS05560 0.83 -0.3 267,606 + EX31_RS05560 0.86 -0.3 267,606 + EX31_RS05560 0.86 -0.8 267,639 + +0.4 267,639 + +0.9 267,639 + -1.1 267,640 - EX31_RS05565 0.10 -2.0 267,640 - EX31_RS05565 0.10 +0.2 267,640 - EX31_RS05565 0.10 -0.8 267,640 - EX31_RS05565 0.10 -0.3 267,640 - EX31_RS05565 0.10 +0.4 267,725 + EX31_RS05565 0.36 -0.5 267,725 + EX31_RS05565 0.36 -1.2 267,725 + EX31_RS05565 0.36 -0.1 267,753 + EX31_RS05565 0.44 -0.5 267,753 + EX31_RS05565 0.44 +0.9 267,753 + EX31_RS05565 0.44 -0.7 267,753 + EX31_RS05565 0.44 +0.5 267,753 + EX31_RS05565 0.44 +0.2 267,754 - EX31_RS05565 0.45 +0.6 267,754 - EX31_RS05565 0.45 -2.8 267,772 + EX31_RS05565 0.50 +0.1 267,772 + EX31_RS05565 0.50 -0.0 267,773 - EX31_RS05565 0.50 +0.3 267,773 - EX31_RS05565 0.50 +0.3 267,786 + EX31_RS05565 0.54 -0.2 267,823 + EX31_RS05565 0.65 +0.1 267,823 + EX31_RS05565 0.65 +0.1 267,824 - EX31_RS05565 0.66 +1.5 267,824 - EX31_RS05565 0.66 -1.0 267,853 + EX31_RS05565 0.75 -0.5 267,853 + EX31_RS05565 0.75 -0.3 267,853 + EX31_RS05565 0.75 -0.8 267,853 + EX31_RS05565 0.75 +0.3 267,853 + EX31_RS05565 0.75 -0.0 267,854 - EX31_RS05565 0.75 -0.2 267,854 - EX31_RS05565 0.75 -0.7 267,854 - EX31_RS05565 0.75 +0.1 267,854 - EX31_RS05565 0.75 -0.1 267,854 - EX31_RS05565 0.75 +0.7 267,886 + EX31_RS05565 0.85 +0.6 267,887 - EX31_RS05565 0.85 +0.4 267,897 + EX31_RS05565 0.88 +0.1 267,898 - EX31_RS05565 0.88 -0.5 267,898 - EX31_RS05565 0.88 -1.5 267,934 + -0.6 267,972 + +0.7 267,994 + -1.5 267,994 + -0.7 267,994 + +0.1 267,994 + -0.9 267,994 + -0.1 267,994 + +0.8 267,994 + -0.6 267,995 - -1.6 267,995 - +0.2 268,004 + +0.0 268,005 - -1.6 268,018 - +0.6 268,018 - -0.1 268,018 - +1.3 268,018 - -0.8 268,018 - -0.0 268,018 - -0.4 268,018 - -0.3 268,018 - -0.1 268,018 - +0.9 268,034 + +1.6 268,174 - EX31_RS05570 0.45 +0.7 268,174 - EX31_RS05570 0.45 -0.3 268,242 + EX31_RS05570 0.65 +0.5 268,243 - EX31_RS05570 0.65 -0.3 268,243 - EX31_RS05570 0.65 -0.3 268,243 - EX31_RS05570 0.65 -0.7 268,243 - EX31_RS05570 0.65 -0.3 268,243 - EX31_RS05570 0.65 +0.7 268,243 - EX31_RS05570 0.65 -1.2 268,243 - EX31_RS05570 0.65 +0.1 268,264 - EX31_RS05570 0.71 -0.6 268,264 - EX31_RS05570 0.71 -0.2 268,264 - EX31_RS05570 0.71 -0.1 268,305 - EX31_RS05570 0.83 -0.2 268,305 - EX31_RS05570 0.83 +0.3 268,324 - EX31_RS05570 0.89 -0.1 268,360 + -0.1 268,360 + -0.0 268,369 - -0.1 268,369 - -0.5 268,369 - +0.0 268,369 - +0.1 268,436 + EX31_RS05575 0.14 -0.1 268,436 + EX31_RS05575 0.14 +0.5 268,436 + EX31_RS05575 0.14 -2.8 268,463 + EX31_RS05575 0.20 -0.0 268,463 + EX31_RS05575 0.20 +0.0 268,463 + EX31_RS05575 0.20 +0.1 268,463 + EX31_RS05575 0.20 -0.3 268,489 + EX31_RS05575 0.25 -0.6 268,491 + EX31_RS05575 0.26 -0.5 268,492 - EX31_RS05575 0.26 -0.9 268,492 - EX31_RS05575 0.26 -0.2 268,497 + EX31_RS05575 0.27 -0.4 268,498 - EX31_RS05575 0.27 -0.4 268,498 - EX31_RS05575 0.27 -0.2 268,498 - EX31_RS05575 0.27 -1.2 268,530 + EX31_RS05575 0.34 -0.0 268,530 + EX31_RS05575 0.34 +0.1 268,531 - EX31_RS05575 0.34 +0.0 268,531 - EX31_RS05575 0.34 -0.4 268,595 + EX31_RS05575 0.47 +0.2 268,595 + EX31_RS05575 0.47 -0.2 268,595 + EX31_RS05575 0.47 +1.1 268,595 + EX31_RS05575 0.47 +0.1 268,595 + EX31_RS05575 0.47 +0.4 268,595 + EX31_RS05575 0.47 +0.3 268,595 + EX31_RS05575 0.47 +0.3 268,595 + EX31_RS05575 0.47 -0.3 268,595 + EX31_RS05575 0.47 -0.4 268,595 + EX31_RS05575 0.47 +0.4 268,595 + EX31_RS05575 0.47 -0.5 268,595 + EX31_RS05575 0.47 +0.6 268,595 + EX31_RS05575 0.47 -0.5 268,596 - EX31_RS05575 0.48 +0.0 268,596 - EX31_RS05575 0.48 +0.2 268,596 - EX31_RS05575 0.48 -0.3 268,596 - EX31_RS05575 0.48 +0.7 268,596 - EX31_RS05575 0.48 +0.2 268,596 - EX31_RS05575 0.48 -0.1 268,596 - EX31_RS05575 0.48 +0.4 268,683 + EX31_RS05575 0.66 -0.5 268,683 + EX31_RS05575 0.66 +0.3 268,683 + EX31_RS05575 0.66 +0.6 268,684 - EX31_RS05575 0.66 -2.9 268,684 - EX31_RS05575 0.66 -0.7 268,684 - EX31_RS05575 0.66 +0.0 268,684 - EX31_RS05575 0.66 -0.2 268,684 - EX31_RS05575 0.66 +0.2 268,688 - EX31_RS05575 0.67 -0.0 268,707 + EX31_RS05575 0.71 -0.7 268,716 - EX31_RS05575 0.73 +2.3 268,716 - EX31_RS05575 0.73 +0.8 268,723 + EX31_RS05575 0.74 +0.5 268,745 - EX31_RS05575 0.79 +0.4 268,843 + -0.3 268,843 + -0.5 268,855 + -1.1 268,856 - +0.5 268,856 - +0.4 268,904 - -1.2 268,904 - +0.5 268,905 + +0.2 268,905 + -0.2 268,927 - -1.3 268,927 - -1.2 268,927 - +0.6
Or see this region's nucleotide sequence