Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01665 and EX31_RS01670 overlap by 8 nucleotides EX31_RS01670 and EX31_RS01675 are separated by 1 nucleotides EX31_RS01675 and EX31_RS25075 are separated by 905 nucleotides
EX31_RS01665: EX31_RS01665 - lysis protein, at 368,088 to 368,594
_RS01665
EX31_RS01670: EX31_RS01670 - lysozyme, at 368,587 to 369,117
_RS01670
EX31_RS01675: EX31_RS01675 - hypothetical protein, at 369,119 to 369,388
_RS01675
EX31_RS25075: EX31_RS25075 - KTSC domain-containing protein, at 370,294 to 370,509
_RS25075
Position (kb) 369
370 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 368.126 kb on - strand at 368.126 kb on - strand at 368.126 kb on - strand at 368.704 kb on - strand, within EX31_RS01670 at 368.836 kb on + strand, within EX31_RS01670 at 368.837 kb on - strand, within EX31_RS01670 at 368.837 kb on - strand, within EX31_RS01670 at 368.837 kb on - strand, within EX31_RS01670 at 368.845 kb on - strand, within EX31_RS01670 at 368.908 kb on - strand, within EX31_RS01670 at 368.951 kb on + strand, within EX31_RS01670 at 368.952 kb on - strand, within EX31_RS01670 at 368.952 kb on - strand, within EX31_RS01670 at 368.970 kb on + strand, within EX31_RS01670 at 369.253 kb on - strand, within EX31_RS01675 at 369.253 kb on - strand, within EX31_RS01675 at 369.253 kb on - strand, within EX31_RS01675 at 369.317 kb on + strand, within EX31_RS01675 at 369.318 kb on - strand, within EX31_RS01675 at 369.354 kb on + strand, within EX31_RS01675 at 369.354 kb on + strand, within EX31_RS01675 at 369.354 kb on + strand, within EX31_RS01675 at 369.355 kb on - strand, within EX31_RS01675 at 369.355 kb on - strand, within EX31_RS01675 at 369.355 kb on - strand, within EX31_RS01675 at 369.355 kb on - strand, within EX31_RS01675 at 369.358 kb on + strand, within EX31_RS01675 at 369.358 kb on + strand, within EX31_RS01675 at 369.358 kb on + strand, within EX31_RS01675 at 369.358 kb on + strand, within EX31_RS01675 at 369.358 kb on + strand, within EX31_RS01675 at 369.359 kb on - strand, within EX31_RS01675 at 369.437 kb on - strand at 369.559 kb on - strand at 369.562 kb on + strand at 369.563 kb on - strand at 369.641 kb on + strand at 369.641 kb on + strand at 369.642 kb on - strand at 369.642 kb on - strand at 369.690 kb on + strand at 369.845 kb on - strand at 369.863 kb on - strand at 369.863 kb on - strand at 369.865 kb on + strand at 369.866 kb on - strand at 369.866 kb on - strand at 369.866 kb on - strand at 369.953 kb on + strand at 369.968 kb on - strand at 369.972 kb on - strand at 369.972 kb on - strand at 370.035 kb on + strand at 370.036 kb on - strand at 370.090 kb on - strand at 370.135 kb on - strand at 370.209 kb on - strand at 370.209 kb on - strand at 370.334 kb on + strand, within EX31_RS25075 at 370.361 kb on + strand, within EX31_RS25075 at 370.367 kb on + strand, within EX31_RS25075 at 370.367 kb on + strand, within EX31_RS25075 at 370.367 kb on + strand, within EX31_RS25075 at 370.387 kb on - strand, within EX31_RS25075
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 368,126 - +0.4 368,126 - +0.1 368,126 - +0.3 368,704 - EX31_RS01670 0.22 +0.1 368,836 + EX31_RS01670 0.47 +0.2 368,837 - EX31_RS01670 0.47 +1.0 368,837 - EX31_RS01670 0.47 -0.1 368,837 - EX31_RS01670 0.47 +0.6 368,845 - EX31_RS01670 0.49 +1.2 368,908 - EX31_RS01670 0.60 +0.2 368,951 + EX31_RS01670 0.69 +1.5 368,952 - EX31_RS01670 0.69 -2.1 368,952 - EX31_RS01670 0.69 -0.6 368,970 + EX31_RS01670 0.72 -0.3 369,253 - EX31_RS01675 0.50 -0.4 369,253 - EX31_RS01675 0.50 +1.4 369,253 - EX31_RS01675 0.50 -1.4 369,317 + EX31_RS01675 0.73 -1.8 369,318 - EX31_RS01675 0.74 -0.5 369,354 + EX31_RS01675 0.87 -0.8 369,354 + EX31_RS01675 0.87 -2.1 369,354 + EX31_RS01675 0.87 -0.5 369,355 - EX31_RS01675 0.87 -0.6 369,355 - EX31_RS01675 0.87 -0.3 369,355 - EX31_RS01675 0.87 +1.1 369,355 - EX31_RS01675 0.87 +0.0 369,358 + EX31_RS01675 0.89 -0.4 369,358 + EX31_RS01675 0.89 +0.4 369,358 + EX31_RS01675 0.89 -2.1 369,358 + EX31_RS01675 0.89 +0.3 369,358 + EX31_RS01675 0.89 -0.7 369,359 - EX31_RS01675 0.89 -0.8 369,437 - -0.2 369,559 - -0.2 369,562 + +1.2 369,563 - +2.4 369,641 + +0.7 369,641 + +1.4 369,642 - +0.5 369,642 - +0.4 369,690 + +1.0 369,845 - +0.2 369,863 - -0.7 369,863 - +0.4 369,865 + +2.9 369,866 - +0.2 369,866 - +1.3 369,866 - -1.8 369,953 + -0.2 369,968 - -0.6 369,972 - -1.5 369,972 - -0.0 370,035 + -0.9 370,036 - -1.4 370,090 - +1.1 370,135 - -0.3 370,209 - +0.5 370,209 - -0.6 370,334 + EX31_RS25075 0.19 -0.1 370,361 + EX31_RS25075 0.31 +0.2 370,367 + EX31_RS25075 0.34 -0.9 370,367 + EX31_RS25075 0.34 -0.8 370,367 + EX31_RS25075 0.34 -0.3 370,387 - EX31_RS25075 0.43 +0.1
Or see this region's nucleotide sequence