Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16515 and EX31_RS26040 are separated by 583 nucleotides EX31_RS26040 and EX31_RS26045 are separated by 11 nucleotides EX31_RS26045 and EX31_RS16520 are separated by 15 nucleotides
EX31_RS16515: EX31_RS16515 - GGDEF domain-containing protein, at 15,387 to 16,445
_RS16515
EX31_RS26040: EX31_RS26040 - hypothetical protein, at 17,029 to 17,205
_RS26040
EX31_RS26045: EX31_RS26045 - hypothetical protein, at 17,217 to 17,462
_RS26045
EX31_RS16520: EX31_RS16520 - glycoside hydrolase 68 family protein, at 17,478 to 18,311
_RS16520
Position (kb) 17
18 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 16.062 kb on + strand, within EX31_RS16515 at 16.062 kb on + strand, within EX31_RS16515 at 16.239 kb on - strand, within EX31_RS16515 at 16.239 kb on - strand, within EX31_RS16515 at 16.262 kb on + strand, within EX31_RS16515 at 16.335 kb on + strand, within EX31_RS16515 at 16.358 kb on + strand at 16.359 kb on - strand at 16.361 kb on - strand at 16.361 kb on - strand at 16.389 kb on - strand at 16.390 kb on + strand at 16.401 kb on + strand at 16.401 kb on + strand at 16.401 kb on + strand at 16.402 kb on - strand at 16.421 kb on + strand at 16.463 kb on - strand at 16.485 kb on + strand at 16.486 kb on - strand at 16.603 kb on + strand at 16.615 kb on + strand at 16.615 kb on + strand at 16.616 kb on - strand at 16.625 kb on - strand at 16.739 kb on + strand at 16.749 kb on + strand at 16.754 kb on + strand at 16.754 kb on + strand at 16.755 kb on - strand at 16.756 kb on + strand at 16.777 kb on - strand at 16.777 kb on - strand at 16.851 kb on + strand at 16.888 kb on - strand at 16.888 kb on - strand at 16.924 kb on + strand at 16.924 kb on + strand at 16.925 kb on - strand at 17.039 kb on + strand at 17.040 kb on - strand at 17.041 kb on + strand at 17.041 kb on + strand at 17.041 kb on + strand at 17.041 kb on + strand at 17.041 kb on + strand at 17.042 kb on - strand at 17.083 kb on - strand, within EX31_RS26040 at 17.105 kb on + strand, within EX31_RS26040 at 17.105 kb on + strand, within EX31_RS26040 at 17.111 kb on + strand, within EX31_RS26040 at 17.215 kb on + strand at 17.276 kb on - strand, within EX31_RS26045 at 17.343 kb on + strand, within EX31_RS26045 at 17.343 kb on + strand, within EX31_RS26045 at 17.343 kb on + strand, within EX31_RS26045 at 17.344 kb on - strand, within EX31_RS26045 at 17.344 kb on - strand, within EX31_RS26045 at 17.344 kb on - strand, within EX31_RS26045 at 17.345 kb on + strand, within EX31_RS26045 at 17.345 kb on + strand, within EX31_RS26045 at 17.345 kb on + strand, within EX31_RS26045 at 17.345 kb on + strand, within EX31_RS26045 at 17.346 kb on - strand, within EX31_RS26045 at 17.346 kb on - strand, within EX31_RS26045 at 17.346 kb on - strand, within EX31_RS26045 at 17.346 kb on - strand, within EX31_RS26045 at 17.346 kb on - strand, within EX31_RS26045 at 17.361 kb on - strand, within EX31_RS26045 at 17.364 kb on + strand, within EX31_RS26045 at 17.364 kb on + strand, within EX31_RS26045 at 17.364 kb on + strand, within EX31_RS26045 at 17.364 kb on + strand, within EX31_RS26045 at 17.364 kb on + strand, within EX31_RS26045 at 17.364 kb on + strand, within EX31_RS26045 at 17.365 kb on - strand, within EX31_RS26045 at 17.426 kb on + strand, within EX31_RS26045 at 17.427 kb on - strand, within EX31_RS26045 at 17.427 kb on - strand, within EX31_RS26045 at 17.453 kb on + strand at 17.453 kb on + strand at 17.454 kb on - strand at 17.459 kb on - strand at 17.477 kb on + strand at 17.477 kb on + strand at 17.478 kb on - strand at 17.487 kb on + strand at 17.487 kb on + strand at 17.488 kb on - strand at 17.488 kb on - strand at 17.488 kb on - strand at 17.490 kb on + strand at 17.490 kb on + strand at 17.490 kb on + strand at 17.491 kb on - strand at 17.491 kb on - strand at 17.522 kb on - strand at 17.541 kb on - strand at 17.593 kb on + strand, within EX31_RS16520 at 17.593 kb on + strand, within EX31_RS16520 at 17.593 kb on + strand, within EX31_RS16520 at 17.594 kb on - strand, within EX31_RS16520 at 17.692 kb on + strand, within EX31_RS16520 at 17.692 kb on + strand, within EX31_RS16520 at 17.692 kb on + strand, within EX31_RS16520 at 17.694 kb on + strand, within EX31_RS16520 at 17.694 kb on + strand, within EX31_RS16520 at 17.694 kb on + strand, within EX31_RS16520 at 17.694 kb on + strand, within EX31_RS16520 at 17.694 kb on + strand, within EX31_RS16520 at 17.694 kb on + strand, within EX31_RS16520 at 17.695 kb on - strand, within EX31_RS16520 at 17.695 kb on - strand, within EX31_RS16520 at 17.695 kb on - strand, within EX31_RS16520 at 17.696 kb on + strand, within EX31_RS16520 at 17.696 kb on + strand, within EX31_RS16520 at 17.696 kb on + strand, within EX31_RS16520 at 17.696 kb on + strand, within EX31_RS16520 at 17.696 kb on + strand, within EX31_RS16520 at 17.696 kb on + strand, within EX31_RS16520 at 17.696 kb on + strand, within EX31_RS16520 at 17.696 kb on + strand, within EX31_RS16520 at 17.696 kb on + strand, within EX31_RS16520 at 17.696 kb on + strand, within EX31_RS16520 at 17.697 kb on - strand, within EX31_RS16520 at 17.697 kb on - strand, within EX31_RS16520 at 17.697 kb on - strand, within EX31_RS16520 at 17.697 kb on - strand, within EX31_RS16520 at 17.697 kb on - strand, within EX31_RS16520 at 17.697 kb on - strand, within EX31_RS16520 at 17.732 kb on + strand, within EX31_RS16520 at 17.733 kb on - strand, within EX31_RS16520 at 17.738 kb on + strand, within EX31_RS16520 at 17.738 kb on + strand, within EX31_RS16520 at 17.738 kb on + strand, within EX31_RS16520 at 17.739 kb on - strand, within EX31_RS16520 at 17.739 kb on - strand, within EX31_RS16520 at 17.739 kb on - strand, within EX31_RS16520 at 17.739 kb on - strand, within EX31_RS16520 at 17.739 kb on - strand, within EX31_RS16520 at 17.739 kb on - strand, within EX31_RS16520 at 17.744 kb on - strand, within EX31_RS16520 at 17.818 kb on + strand, within EX31_RS16520 at 17.818 kb on + strand, within EX31_RS16520 at 17.818 kb on + strand, within EX31_RS16520 at 17.818 kb on + strand, within EX31_RS16520 at 17.819 kb on - strand, within EX31_RS16520 at 17.819 kb on - strand, within EX31_RS16520 at 17.819 kb on - strand, within EX31_RS16520 at 17.822 kb on + strand, within EX31_RS16520 at 17.893 kb on + strand, within EX31_RS16520 at 17.893 kb on + strand, within EX31_RS16520 at 17.894 kb on - strand, within EX31_RS16520 at 17.940 kb on + strand, within EX31_RS16520 at 17.940 kb on + strand, within EX31_RS16520 at 17.940 kb on + strand, within EX31_RS16520 at 17.940 kb on + strand, within EX31_RS16520 at 17.941 kb on - strand, within EX31_RS16520 at 17.941 kb on - strand, within EX31_RS16520 at 17.941 kb on - strand, within EX31_RS16520 at 17.943 kb on + strand, within EX31_RS16520 at 17.943 kb on + strand, within EX31_RS16520 at 17.969 kb on + strand, within EX31_RS16520 at 17.969 kb on + strand, within EX31_RS16520 at 17.970 kb on - strand, within EX31_RS16520 at 17.973 kb on + strand, within EX31_RS16520 at 17.973 kb on + strand, within EX31_RS16520 at 17.973 kb on + strand, within EX31_RS16520 at 17.974 kb on - strand, within EX31_RS16520 at 17.974 kb on - strand, within EX31_RS16520 at 17.974 kb on - strand, within EX31_RS16520 at 17.974 kb on - strand, within EX31_RS16520 at 17.986 kb on + strand, within EX31_RS16520 at 17.986 kb on + strand, within EX31_RS16520 at 18.006 kb on + strand, within EX31_RS16520 at 18.006 kb on + strand, within EX31_RS16520 at 18.007 kb on - strand, within EX31_RS16520 at 18.039 kb on + strand, within EX31_RS16520 at 18.039 kb on + strand, within EX31_RS16520 at 18.039 kb on + strand, within EX31_RS16520 at 18.039 kb on + strand, within EX31_RS16520 at 18.040 kb on - strand, within EX31_RS16520 at 18.040 kb on - strand, within EX31_RS16520 at 18.040 kb on - strand, within EX31_RS16520 at 18.041 kb on + strand, within EX31_RS16520 at 18.041 kb on + strand, within EX31_RS16520 at 18.041 kb on + strand, within EX31_RS16520 at 18.041 kb on + strand, within EX31_RS16520 at 18.041 kb on + strand, within EX31_RS16520 at 18.042 kb on - strand, within EX31_RS16520 at 18.042 kb on - strand, within EX31_RS16520 at 18.042 kb on - strand, within EX31_RS16520 at 18.103 kb on - strand, within EX31_RS16520 at 18.111 kb on + strand, within EX31_RS16520 at 18.111 kb on + strand, within EX31_RS16520 at 18.112 kb on - strand, within EX31_RS16520 at 18.130 kb on + strand, within EX31_RS16520 at 18.131 kb on - strand, within EX31_RS16520 at 18.149 kb on + strand, within EX31_RS16520 at 18.149 kb on + strand, within EX31_RS16520 at 18.149 kb on + strand, within EX31_RS16520 at 18.149 kb on + strand, within EX31_RS16520 at 18.149 kb on + strand, within EX31_RS16520 at 18.150 kb on - strand, within EX31_RS16520 at 18.150 kb on - strand, within EX31_RS16520 at 18.150 kb on - strand, within EX31_RS16520 at 18.154 kb on + strand, within EX31_RS16520 at 18.155 kb on - strand, within EX31_RS16520 at 18.155 kb on - strand, within EX31_RS16520 at 18.155 kb on - strand, within EX31_RS16520 at 18.155 kb on - strand, within EX31_RS16520 at 18.155 kb on - strand, within EX31_RS16520 at 18.160 kb on + strand, within EX31_RS16520 at 18.186 kb on + strand, within EX31_RS16520 at 18.186 kb on + strand, within EX31_RS16520
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 16,062 + EX31_RS16515 0.64 +0.4 16,062 + EX31_RS16515 0.64 +0.5 16,239 - EX31_RS16515 0.80 +0.4 16,239 - EX31_RS16515 0.80 +0.1 16,262 + EX31_RS16515 0.83 -0.7 16,335 + EX31_RS16515 0.90 -0.7 16,358 + +0.3 16,359 - +0.4 16,361 - -0.6 16,361 - -0.1 16,389 - +1.0 16,390 + +0.6 16,401 + +0.6 16,401 + -2.5 16,401 + -0.2 16,402 - -1.0 16,421 + -0.4 16,463 - +1.4 16,485 + +0.6 16,486 - -0.6 16,603 + -1.9 16,615 + -0.3 16,615 + -0.4 16,616 - -1.6 16,625 - -0.4 16,739 + +0.7 16,749 + -0.1 16,754 + +0.1 16,754 + +0.5 16,755 - -0.6 16,756 + -0.6 16,777 - -1.3 16,777 - -0.6 16,851 + +1.4 16,888 - -1.5 16,888 - -0.3 16,924 + -0.6 16,924 + -1.1 16,925 - -0.5 17,039 + -0.2 17,040 - -0.6 17,041 + -1.0 17,041 + -0.6 17,041 + +0.5 17,041 + -0.2 17,041 + -0.1 17,042 - +0.3 17,083 - EX31_RS26040 0.31 -1.4 17,105 + EX31_RS26040 0.43 -1.2 17,105 + EX31_RS26040 0.43 +1.8 17,111 + EX31_RS26040 0.46 -1.7 17,215 + -0.4 17,276 - EX31_RS26045 0.24 +0.7 17,343 + EX31_RS26045 0.51 +0.3 17,343 + EX31_RS26045 0.51 +0.4 17,343 + EX31_RS26045 0.51 -0.2 17,344 - EX31_RS26045 0.52 +0.3 17,344 - EX31_RS26045 0.52 -0.8 17,344 - EX31_RS26045 0.52 +0.7 17,345 + EX31_RS26045 0.52 +0.2 17,345 + EX31_RS26045 0.52 -0.9 17,345 + EX31_RS26045 0.52 -0.1 17,345 + EX31_RS26045 0.52 -0.6 17,346 - EX31_RS26045 0.52 -0.0 17,346 - EX31_RS26045 0.52 -1.9 17,346 - EX31_RS26045 0.52 +0.9 17,346 - EX31_RS26045 0.52 -0.4 17,346 - EX31_RS26045 0.52 -1.8 17,361 - EX31_RS26045 0.59 -1.7 17,364 + EX31_RS26045 0.60 +1.0 17,364 + EX31_RS26045 0.60 +0.6 17,364 + EX31_RS26045 0.60 +0.8 17,364 + EX31_RS26045 0.60 -0.3 17,364 + EX31_RS26045 0.60 -1.0 17,364 + EX31_RS26045 0.60 +0.5 17,365 - EX31_RS26045 0.60 -0.4 17,426 + EX31_RS26045 0.85 -0.1 17,427 - EX31_RS26045 0.85 -0.4 17,427 - EX31_RS26045 0.85 +0.3 17,453 + -0.1 17,453 + +0.2 17,454 - -1.1 17,459 - -0.2 17,477 + +0.9 17,477 + -0.9 17,478 - +1.1 17,487 + +0.1 17,487 + +0.0 17,488 - -0.5 17,488 - +0.4 17,488 - +1.5 17,490 + +1.0 17,490 + +1.2 17,490 + -0.9 17,491 - -0.3 17,491 - +0.5 17,522 - -0.3 17,541 - -1.3 17,593 + EX31_RS16520 0.14 -0.6 17,593 + EX31_RS16520 0.14 +0.2 17,593 + EX31_RS16520 0.14 -0.2 17,594 - EX31_RS16520 0.14 +0.1 17,692 + EX31_RS16520 0.26 -0.6 17,692 + EX31_RS16520 0.26 +0.7 17,692 + EX31_RS16520 0.26 -0.2 17,694 + EX31_RS16520 0.26 -1.6 17,694 + EX31_RS16520 0.26 +0.3 17,694 + EX31_RS16520 0.26 -0.9 17,694 + EX31_RS16520 0.26 +1.2 17,694 + EX31_RS16520 0.26 -0.5 17,694 + EX31_RS16520 0.26 -0.4 17,695 - EX31_RS16520 0.26 +0.5 17,695 - EX31_RS16520 0.26 -0.4 17,695 - EX31_RS16520 0.26 +0.0 17,696 + EX31_RS16520 0.26 -0.1 17,696 + EX31_RS16520 0.26 +1.1 17,696 + EX31_RS16520 0.26 +0.9 17,696 + EX31_RS16520 0.26 -1.6 17,696 + EX31_RS16520 0.26 -0.8 17,696 + EX31_RS16520 0.26 -1.0 17,696 + EX31_RS16520 0.26 -0.7 17,696 + EX31_RS16520 0.26 +0.9 17,696 + EX31_RS16520 0.26 -1.1 17,696 + EX31_RS16520 0.26 +0.8 17,697 - EX31_RS16520 0.26 -0.1 17,697 - EX31_RS16520 0.26 +0.6 17,697 - EX31_RS16520 0.26 -1.5 17,697 - EX31_RS16520 0.26 -0.2 17,697 - EX31_RS16520 0.26 -1.3 17,697 - EX31_RS16520 0.26 +1.3 17,732 + EX31_RS16520 0.30 +0.3 17,733 - EX31_RS16520 0.31 +0.9 17,738 + EX31_RS16520 0.31 -0.7 17,738 + EX31_RS16520 0.31 -0.2 17,738 + EX31_RS16520 0.31 -0.7 17,739 - EX31_RS16520 0.31 +0.2 17,739 - EX31_RS16520 0.31 -0.9 17,739 - EX31_RS16520 0.31 -0.5 17,739 - EX31_RS16520 0.31 -0.8 17,739 - EX31_RS16520 0.31 -0.8 17,739 - EX31_RS16520 0.31 -0.6 17,744 - EX31_RS16520 0.32 -1.1 17,818 + EX31_RS16520 0.41 -0.1 17,818 + EX31_RS16520 0.41 -1.4 17,818 + EX31_RS16520 0.41 +0.7 17,818 + EX31_RS16520 0.41 -0.9 17,819 - EX31_RS16520 0.41 +1.1 17,819 - EX31_RS16520 0.41 +0.6 17,819 - EX31_RS16520 0.41 -0.0 17,822 + EX31_RS16520 0.41 +0.8 17,893 + EX31_RS16520 0.50 -0.6 17,893 + EX31_RS16520 0.50 +0.2 17,894 - EX31_RS16520 0.50 +1.9 17,940 + EX31_RS16520 0.55 -1.1 17,940 + EX31_RS16520 0.55 +0.1 17,940 + EX31_RS16520 0.55 -1.4 17,940 + EX31_RS16520 0.55 -1.6 17,941 - EX31_RS16520 0.56 +2.2 17,941 - EX31_RS16520 0.56 +0.5 17,941 - EX31_RS16520 0.56 -1.3 17,943 + EX31_RS16520 0.56 -0.2 17,943 + EX31_RS16520 0.56 +0.2 17,969 + EX31_RS16520 0.59 -0.6 17,969 + EX31_RS16520 0.59 +0.0 17,970 - EX31_RS16520 0.59 -1.6 17,973 + EX31_RS16520 0.59 -0.5 17,973 + EX31_RS16520 0.59 +0.7 17,973 + EX31_RS16520 0.59 -0.4 17,974 - EX31_RS16520 0.59 -0.1 17,974 - EX31_RS16520 0.59 -0.1 17,974 - EX31_RS16520 0.59 -0.4 17,974 - EX31_RS16520 0.59 -0.2 17,986 + EX31_RS16520 0.61 +0.4 17,986 + EX31_RS16520 0.61 +0.4 18,006 + EX31_RS16520 0.63 -0.0 18,006 + EX31_RS16520 0.63 -1.0 18,007 - EX31_RS16520 0.63 +0.4 18,039 + EX31_RS16520 0.67 -0.1 18,039 + EX31_RS16520 0.67 +1.3 18,039 + EX31_RS16520 0.67 +0.2 18,039 + EX31_RS16520 0.67 +0.1 18,040 - EX31_RS16520 0.67 +0.2 18,040 - EX31_RS16520 0.67 -1.0 18,040 - EX31_RS16520 0.67 -1.4 18,041 + EX31_RS16520 0.68 +1.2 18,041 + EX31_RS16520 0.68 -0.1 18,041 + EX31_RS16520 0.68 -0.8 18,041 + EX31_RS16520 0.68 -1.2 18,041 + EX31_RS16520 0.68 +0.8 18,042 - EX31_RS16520 0.68 +0.1 18,042 - EX31_RS16520 0.68 -0.4 18,042 - EX31_RS16520 0.68 +0.1 18,103 - EX31_RS16520 0.75 +0.6 18,111 + EX31_RS16520 0.76 -0.9 18,111 + EX31_RS16520 0.76 -0.4 18,112 - EX31_RS16520 0.76 -0.3 18,130 + EX31_RS16520 0.78 -2.8 18,131 - EX31_RS16520 0.78 -0.7 18,149 + EX31_RS16520 0.80 +0.5 18,149 + EX31_RS16520 0.80 -0.3 18,149 + EX31_RS16520 0.80 +0.5 18,149 + EX31_RS16520 0.80 -0.2 18,149 + EX31_RS16520 0.80 -0.7 18,150 - EX31_RS16520 0.81 +0.3 18,150 - EX31_RS16520 0.81 +0.1 18,150 - EX31_RS16520 0.81 -2.1 18,154 + EX31_RS16520 0.81 -2.6 18,155 - EX31_RS16520 0.81 +0.8 18,155 - EX31_RS16520 0.81 -1.3 18,155 - EX31_RS16520 0.81 +0.1 18,155 - EX31_RS16520 0.81 +0.5 18,155 - EX31_RS16520 0.81 -0.2 18,160 + EX31_RS16520 0.82 +0.7 18,186 + EX31_RS16520 0.85 +0.4 18,186 + EX31_RS16520 0.85 +0.4
Or see this region's nucleotide sequence