Strain Fitness in Rahnella sp. WP5 around EX31_RS25945

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS25940 and EX31_RS25945 are separated by 459 nucleotidesEX31_RS25945 and EX31_RS25950 are separated by 264 nucleotidesEX31_RS25950 and EX31_RS25955 are separated by 219 nucleotides EX31_RS25940: EX31_RS25940 - hypothetical protein, at 335 to 394 _RS25940 EX31_RS25945: EX31_RS25945 - hypothetical protein, at 854 to 1,315 _RS25945 EX31_RS25950: EX31_RS25950 - hypothetical protein, at 1,580 to 1,951 _RS25950 EX31_RS25955: EX31_RS25955 - hypothetical protein, at 2,171 to 2,785 _RS25955 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1at 0.330 kb on + strandat 0.330 kb on + strandat 0.330 kb on + strandat 0.330 kb on + strandat 0.332 kb on + strandat 0.332 kb on + strandat 0.367 kb on + strand, within EX31_RS25940at 0.450 kb on + strandat 0.450 kb on + strandat 0.948 kb on + strand, within EX31_RS25945at 0.948 kb on + strand, within EX31_RS25945at 1.076 kb on - strand, within EX31_RS25945at 1.099 kb on + strand, within EX31_RS25945at 1.209 kb on + strand, within EX31_RS25945at 1.210 kb on - strand, within EX31_RS25945at 1.247 kb on - strand, within EX31_RS25945at 1.320 kb on + strandat 1.350 kb on + strandat 1.351 kb on - strandat 1.351 kb on - strandat 1.404 kb on + strandat 1.504 kb on - strandat 1.711 kb on + strand, within EX31_RS25950at 1.790 kb on + strand, within EX31_RS25950at 2.211 kb on - strandat 2.245 kb on + strand, within EX31_RS25955at 2.246 kb on - strand, within EX31_RS25955at 2.246 kb on - strand, within EX31_RS25955at 2.246 kb on - strand, within EX31_RS25955at 2.246 kb on - strand, within EX31_RS25955at 2.254 kb on + strand, within EX31_RS25955at 2.254 kb on + strand, within EX31_RS25955at 2.258 kb on + strand, within EX31_RS25955at 2.258 kb on + strand, within EX31_RS25955at 2.258 kb on + strand, within EX31_RS25955at 2.259 kb on - strand, within EX31_RS25955at 2.267 kb on - strand, within EX31_RS25955

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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330 + -0.5
330 + -1.1
330 + -0.3
330 + +0.9
332 + +1.0
332 + -0.8
367 + EX31_RS25940 0.53 +0.8
450 + -1.0
450 + -0.9
948 + EX31_RS25945 0.20 -1.2
948 + EX31_RS25945 0.20 -0.7
1,076 - EX31_RS25945 0.48 -0.5
1,099 + EX31_RS25945 0.53 -0.6
1,209 + EX31_RS25945 0.77 -2.2
1,210 - EX31_RS25945 0.77 +0.7
1,247 - EX31_RS25945 0.85 -0.7
1,320 + +0.8
1,350 + -0.1
1,351 - -0.6
1,351 - -0.2
1,404 + +0.3
1,504 - +0.1
1,711 + EX31_RS25950 0.35 -2.0
1,790 + EX31_RS25950 0.56 -0.8
2,211 - +0.2
2,245 + EX31_RS25955 0.12 +0.1
2,246 - EX31_RS25955 0.12 -0.9
2,246 - EX31_RS25955 0.12 +0.3
2,246 - EX31_RS25955 0.12 +0.6
2,246 - EX31_RS25955 0.12 +0.1
2,254 + EX31_RS25955 0.13 +0.8
2,254 + EX31_RS25955 0.13 -0.8
2,258 + EX31_RS25955 0.14 -0.8
2,258 + EX31_RS25955 0.14 -1.7
2,258 + EX31_RS25955 0.14 +0.2
2,259 - EX31_RS25955 0.14 -0.1
2,267 - EX31_RS25955 0.16 +0.4

Or see this region's nucleotide sequence