Strain Fitness in Rahnella sp. WP5 around EX31_RS25680

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24635 and EX31_RS25680 are separated by 672 nucleotidesEX31_RS25680 and EX31_RS24640 are separated by 144 nucleotidesEX31_RS24640 and EX31_RS24645 are separated by 149 nucleotides EX31_RS24635: EX31_RS24635 - autotransporter outer membrane beta-barrel domain-containing protein, at 694,803 to 697,496 _RS24635 EX31_RS25680: EX31_RS25680 - PhoP/PhoQ regulator MgrB, at 698,169 to 698,411 _RS25680 EX31_RS24640: EX31_RS24640 - hypothetical protein, at 698,556 to 698,828 _RS24640 EX31_RS24645: EX31_RS24645 - DUF2591 domain-containing protein, at 698,978 to 699,280 _RS24645 Position (kb) 698 699Strain fitness (log2 ratio) -3 -2 -1 0 1at 697.193 kb on + strand, within EX31_RS24635at 697.194 kb on - strand, within EX31_RS24635at 697.226 kb on + strand, within EX31_RS24635at 697.289 kb on - strandat 697.289 kb on - strandat 697.306 kb on + strandat 697.306 kb on + strandat 697.306 kb on + strandat 697.307 kb on - strandat 697.307 kb on - strandat 697.378 kb on + strandat 697.378 kb on + strandat 697.379 kb on - strandat 697.385 kb on + strandat 697.386 kb on - strandat 697.407 kb on - strandat 697.786 kb on + strandat 697.787 kb on - strandat 697.838 kb on + strandat 697.839 kb on - strandat 697.895 kb on - strandat 697.978 kb on + strandat 698.043 kb on + strandat 698.044 kb on - strandat 698.100 kb on + strandat 698.168 kb on + strandat 698.168 kb on + strandat 698.168 kb on + strandat 698.168 kb on + strandat 698.168 kb on + strandat 698.168 kb on + strandat 698.169 kb on - strandat 698.169 kb on - strandat 698.217 kb on - strand, within EX31_RS25680at 698.288 kb on + strand, within EX31_RS25680at 698.288 kb on + strand, within EX31_RS25680at 698.288 kb on + strand, within EX31_RS25680at 698.289 kb on - strand, within EX31_RS25680at 698.325 kb on + strand, within EX31_RS25680at 698.325 kb on + strand, within EX31_RS25680at 698.346 kb on + strand, within EX31_RS25680at 698.346 kb on + strand, within EX31_RS25680at 698.346 kb on + strand, within EX31_RS25680at 698.346 kb on + strand, within EX31_RS25680at 698.346 kb on + strand, within EX31_RS25680at 698.346 kb on + strand, within EX31_RS25680at 698.347 kb on - strand, within EX31_RS25680at 698.347 kb on - strand, within EX31_RS25680at 698.380 kb on + strand, within EX31_RS25680at 698.380 kb on + strand, within EX31_RS25680at 698.380 kb on + strand, within EX31_RS25680at 698.380 kb on + strand, within EX31_RS25680at 698.380 kb on + strand, within EX31_RS25680at 698.380 kb on + strand, within EX31_RS25680at 698.380 kb on + strand, within EX31_RS25680at 698.380 kb on + strand, within EX31_RS25680at 698.380 kb on + strand, within EX31_RS25680at 698.492 kb on - strandat 698.517 kb on + strandat 698.550 kb on + strandat 698.623 kb on + strand, within EX31_RS24640at 698.689 kb on + strand, within EX31_RS24640at 698.728 kb on + strand, within EX31_RS24640at 698.729 kb on - strand, within EX31_RS24640at 698.732 kb on + strand, within EX31_RS24640at 698.813 kb on + strandat 698.814 kb on - strandat 698.826 kb on + strandat 698.826 kb on + strandat 698.826 kb on + strandat 698.826 kb on + strandat 698.826 kb on + strandat 698.827 kb on - strandat 698.884 kb on - strandat 698.972 kb on + strandat 699.024 kb on + strand, within EX31_RS24645at 699.025 kb on - strand, within EX31_RS24645at 699.025 kb on - strand, within EX31_RS24645at 699.060 kb on - strand, within EX31_RS24645at 699.249 kb on + strand, within EX31_RS24645at 699.250 kb on - strandat 699.262 kb on + strandat 699.276 kb on + strandat 699.297 kb on - strandat 699.297 kb on - strandat 699.371 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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697,193 + EX31_RS24635 0.89 -0.1
697,194 - EX31_RS24635 0.89 -2.1
697,226 + EX31_RS24635 0.90 -1.6
697,289 - -0.5
697,289 - -3.0
697,306 + +0.6
697,306 + -0.1
697,306 + +0.4
697,307 - -0.4
697,307 - -1.2
697,378 + -1.2
697,378 + -0.1
697,379 - +0.8
697,385 + +0.9
697,386 - +1.1
697,407 - -0.2
697,786 + -0.4
697,787 - +1.1
697,838 + -1.4
697,839 - -0.0
697,895 - -0.5
697,978 + +0.0
698,043 + +0.4
698,044 - +0.5
698,100 + +1.2
698,168 + +0.7
698,168 + -0.5
698,168 + -0.2
698,168 + -0.4
698,168 + -0.4
698,168 + -0.4
698,169 - +0.4
698,169 - +1.3
698,217 - EX31_RS25680 0.20 -0.8
698,288 + EX31_RS25680 0.49 +0.2
698,288 + EX31_RS25680 0.49 +0.2
698,288 + EX31_RS25680 0.49 -1.4
698,289 - EX31_RS25680 0.49 +0.1
698,325 + EX31_RS25680 0.64 -0.7
698,325 + EX31_RS25680 0.64 -0.6
698,346 + EX31_RS25680 0.73 -0.8
698,346 + EX31_RS25680 0.73 -1.8
698,346 + EX31_RS25680 0.73 -0.7
698,346 + EX31_RS25680 0.73 -0.5
698,346 + EX31_RS25680 0.73 -0.7
698,346 + EX31_RS25680 0.73 -0.3
698,347 - EX31_RS25680 0.73 -1.7
698,347 - EX31_RS25680 0.73 -2.7
698,380 + EX31_RS25680 0.87 -0.6
698,380 + EX31_RS25680 0.87 +0.7
698,380 + EX31_RS25680 0.87 +0.3
698,380 + EX31_RS25680 0.87 -0.5
698,380 + EX31_RS25680 0.87 -0.8
698,380 + EX31_RS25680 0.87 +0.2
698,380 + EX31_RS25680 0.87 +0.2
698,380 + EX31_RS25680 0.87 -0.5
698,380 + EX31_RS25680 0.87 -2.8
698,492 - +0.2
698,517 + +0.5
698,550 + +0.5
698,623 + EX31_RS24640 0.25 -0.3
698,689 + EX31_RS24640 0.49 -0.7
698,728 + EX31_RS24640 0.63 +0.6
698,729 - EX31_RS24640 0.63 +0.5
698,732 + EX31_RS24640 0.64 -0.2
698,813 + +0.4
698,814 - -1.2
698,826 + -0.5
698,826 + -2.9
698,826 + -0.3
698,826 + -1.3
698,826 + +0.6
698,827 - +0.9
698,884 - +0.3
698,972 + +0.1
699,024 + EX31_RS24645 0.15 +0.4
699,025 - EX31_RS24645 0.16 +0.1
699,025 - EX31_RS24645 0.16 +0.9
699,060 - EX31_RS24645 0.27 +1.0
699,249 + EX31_RS24645 0.89 +0.6
699,250 - -0.6
699,262 + -2.5
699,276 + +0.3
699,297 - +0.0
699,297 - -0.4
699,371 + -0.2

Or see this region's nucleotide sequence